Structure of 32501-05-6
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CAS No. : | 32501-05-6 |
Formula : | C7H6N2O |
M.W : | 134.14 |
SMILES Code : | O=C1CC2=NC=CC=C2N1 |
MDL No. : | MFCD02179615 |
InChI Key : | IHRRHTILSRVFPW-UHFFFAOYSA-N |
Pubchem ID : | 316367 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.14 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 39.53 |
TPSA ? Topological Polar Surface Area: Calculated from |
41.99 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.04 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-0.26 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.0 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.08 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.41 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.42 |
Log S (ESOL):? ESOL: Topological method implemented from |
-0.95 |
Solubility | 15.0 mg/ml ; 0.112 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-0.16 |
Solubility | 92.1 mg/ml ; 0.687 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.48 |
Solubility | 0.441 mg/ml ; 0.00329 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.3 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.65 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1.82 g (66% over 3 steps) | D. 1H-Pyrrolo [3,2-b]pyridin-2(3H)-one The title C compound from the previous reaction was suspended in concentrated hydrochloric acid (120 mL) and heated to reflux for 24 hours. The reaction mixture was cooled and neutralized with solid potassium carbonate. This solution was extracted with ethyl acetate, the combined extracts dried over magnesium sulfate and the solvent removed to yield 1.82 g (66% over 3 steps) of a brown solid which was used in the next reaction without purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
62% | With hydrogenchloride; In diethyl ether; | 4-Azaoxindole Ethyl 2-(3-amino-pyridin-2-yl)-acetate (6.94 g, 0.038 mol) was dissolved in diethyl ether (100 mL) at room temperature. Hydrochloric acid (2M, 35 mL) was added and the reaction was stirred for 30 minutes. The volatiles were removed to afford a brown solid that was re-crystallized from ethanol and diethyl ether (4.0 g, 62% yield). 1H NMR 400 MHz (DMSO-d6) delta12.35 (s, 1H); 8.12 (m, 1H); 7.90 (m, 1H); 7.14 (m, 1H); 5.75 (s, 2H). Electrospray MS m/z 135 (M+1). |
62% | With hydrogenchloride; In diethyl ether; | d 1,3-Dihydro-2H-pyrrolo[3,2-b]pyridin-2-one Ethyl 2-(3-amino-pyridin-2-yl)-acetate (6.94 g, 0.038 mol) was dissolved in diethyl ether (100 mL) at room temperature. Hydrochloric acid (2M, 35 mL) was added, and the reaction was stirred for 30 minutes. The volatiles were removed to afford a brown solid that was recrystallized from ethanol and diethyl ether to provide the title compound (4.0 g, 62% yield). 1H NMR 400 MHz (DMSO-d6): delta12.35 (s, 1H); 8.12 (m, 1H); 7.90 (m, 1H); 7.14 (m, 1H); 5.75 (s, 2H). Electrospray MS m/a 135 (M+H). |
62% | With hydrogenchloride; In diethyl ether; | d 1,3-Dihydro-2H-pyrrolo[3,2-b]pyridin-2-one Ethyl 2-(3-amino-pyridin-2-yl)-acetate (6.94 g, 0.038 mol) was dissolved in diethyl ether (100 mL) at room temperature. Hydrochloric acid (2M, 35 mL) was added, and the reaction was stirred for 30 minutes. The volatiles were removed to afford a brown solid that was recrystallized from ethanol and diethyl ether to provide the title compound (4.0 g, 62% yield). 1H NMR 400 MHz (DMSO-d6): delta 12.35 (s, 1H); 8.12 (m, 1H); 7.90 (m, 1H); 7.14 (m, 1H); 5.75 (s, 2H). Electrospray MS m/z 135 (M+H). |
62% | With hydrogenchloride; In diethyl ether; water; at 20℃; for 0.5h; | d) 4-Azaoxindole ethyl 2-(3-amino-pyridin-2-yl)-acetate (6.94 g, 0.038 mol) was dissolved in diethyl ether (100 ML) at room temperature.. hydrochloric acid (2M, 35 ML) was added and the reaction was stirred for 30 minutes.. The volatiles were removed to afford a brown solid that was re-crystallized from ethanol and diethyl ether (4.0 g, 62% yield). 1H NMR 400 MHz (DMSO-d6) delta 12.35 (s, 1H); 8.12 (m, 1H); 7.90 (m, 1H); 7.14 (m, 1H); 5.75 (s, 2H).. Electrospray MS m/z 135 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In DMF (N,N-dimethyl-formamide); at 20℃; for 1h; | This monomer was generated in situ (during library synthesis) from 4-aza-oxindole and dimethylformamide di-t-butylacetal in DMF.Monomer 9 and Monomer 10 were generated in situ by preparing stock solutions of the corresponding aza-oxindole. For example, 20.1 mg of 4-aza-oxindole was dissolved in 4.0 mL of ethanol. Both of the precursors for monomers 9 and 10 were transferred (0.20 ml/well) to a 96-well dry heating block (vwrBRAND Dry Block Heater, cat No.13259-066) according to the map below where M represents the monomer and A represents the amine. The ethanol was evaporated off at 50 C. until it was clear that there was no solvent remaining. DMF (0.20 mL) was added followed by the addition of dimethylformamide di-t-butylacetal (0.003 mL) and this remained at room temperature for 1 h. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In N,N-dimethyl-formamide; | 3-[(Dimethylamino)methylidene]-1H-pyrrolo[3,2-b]pyridin-2-one This monomer was generated in situ (during library synthesis) from <strong>[32501-05-6]1,3-dihydro-2H-pyrrolo[3,2-b]pyridin-2-one</strong> and dimethylformamide di-t-butylacetal in DMF. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Synthesis of 1,3-dihydro-4-(2-acetylthioethyl)-2-oxo-2H-pyrrolo[3,2-b]pyridinium bromide To 1,3-dihydro-2H-pyrrolo[3,2-b]pyridin-2-one (6.25 g, 0.05 mol) ?prepared as described in J. Org. Chem. Vol. 37, pp. 51-4, 1972! in acetonitrile (500 ml) is added S-acetyl-2-bromoethanethiol. The reaction mixture is heated at reflux for 12 hours under an atmosphere of nitrogen. The reaction mixture is the concentrated under reduced pressure and the crude residue is triturated in diethyl ether. The product can be further purified by flash chromatography with 5% isopropanol in methylene chloride on silica gel. | ||
Synthesis of 1,3-dihydro-4-(2-acetylthioethyl)-2-oxo-2H-pyrrolo[3,2-b]pyridinium bromide To 1,3-dihydro-2H-pyrrolo[3,2-b]pyridin-2-one (6.25 g, 0.05 mol) ?prepared as described in J. Org. Chem. Vol.37, pp. 51-4, 1972! in acetonitrile (500 ml) is added S-acetyl-2-bromoethanethiol. The reaction mixture is heated at reflux for 12 hours under an atmosphere of nitrogen. The reaction mixture is the concentrated under reduced pressure and the crude residue is triturated in diethyl ether. the product can be further purified by flash chromatography with 5% isopropanol in methylene chloride on silica gel. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
33% | In dichloromethane; ethyl acetate; | A mixture of 2-(3-nitro-2-pyridyl)ethyl acetate (10.1, 48 mmol), tin(II)chloride dihydrate (54.3 g, 240 mmol) and ethyl acetate was stirred and heated at reflux for 5 hours. The reaction mixture was allowed to cool overnight, filtered through diatomaceous earth and the solvent was removed by evaporation. The resulting oil was purified by flash chromatography using increasingly polar solvent mixtures starting with methylene chloride and ending with methylene chloride/methanol (10/1). Removal of the solvent by evaporation gave 4-azaoxindole (2.1 g, 33%). 1H NMR Spectrum: (DMSOd6) 3.35(br s, 2H); 7.15(m, 2H); 8.05(d, 1H); 10.50(br s, 1H) MS (ESI): [MH]+ 133 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
16% | EXAMPLE 73 3-(3H-Isobenzofuran-1-ylidene)-1,3-dihydro-pyrrolo[3,2-b]pyridin-2-one To a solution of 1,3-dihydro-pyrrolo[3,2-b]pyridin-2-one(50 mg, 0.37 mmol) in anhydrous N,N-dimethylformamide(5.0 ml) was added 1.0M LiHMDS/THF solution (0.74 ml, 0.74 mmol) under N2. After the mixture was stirred at room temperature for 10 minutes, phthalide was added (40 mg, 0.30 mmol), and then it was continuously stirred at room temperature for 4 hours. The mixture was poured into 2M HCl (4.0 ml), heated at 50 C. for 20 minutes and then poured into water (100 ml). After cooled to room temperature, the mixture was basified to pH 9 with saturated NaHCO3 solution, and was stirred at room temperature overnight. The resulting solid was filtered, washed with water, dried under vacuum and triturated with chloroform to give 3-(3H-isobenzofuran-1-ylidene)-1,3-dihydro-pyrrolo[3,2-b]pyridin-2-one as a yellow solid (12 mg, 16%). 1H NMR (500 MHz, d6-DMSO) delta ppm 5.84 (s, 2 H) 7.05 (dd, J=7.32, 4.88 Hz, 1 H) 7.11 (dd, J=7.81, 1.46 Hz, 1 H) 7.58-7.63 (m, 1 H) 7.70-7.73 (m, 2 H) 8.13 (d, J=3.42 Hz, 1 H) 9.75 (d, J=7.81 Hz, 1 H) 10.53 (s, 1 H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With piperidine; In methanol; for 5h;Reflux; | General procedure: Piperidine (0.08 mL) was added to methanol (25 mL) dissolved in substituted aldehydes 5-7 (0.18 mmol) and starting 2-indolinone derivatives 8-11 (0.18 mmol) which were prepared as described previously refPreviewPlaceHolder[6], refPreviewPlaceHolder[21], refPreviewPlaceHolder[22], refPreviewPlaceHolder[23], refPreviewPlaceHolder[24] and refPreviewPlaceHolder[25]. The mixture was refluxed for 5 h. For the targeted compounds 12-21 and 28-36, the mixture was evaporated to remove the solvent and the residue was purified by column chromatography (CH2Cl2/MeOH 100:1-10:1). For the targeted compounds 22-27, ethyl ether (15 mL) was added to the residue and the yellow precipitate was collected by filtration. The obtained precipitate was subjected to the hydrogen chloride saturated methanol to afford it as hydrochloride derivative. All the targeted compounds 12-36 show moderate to good yields under this reaction condition with the yields of 60-92%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | General procedure: Piperidine (0.08 mL) was added to methanol (25 mL) dissolved in substituted aldehydes 5-7 (0.18 mmol) and starting 2-indolinone derivatives 8-11 (0.18 mmol) which were prepared as described previously refPreviewPlaceHolder[6], refPreviewPlaceHolder[21], refPreviewPlaceHolder[22], refPreviewPlaceHolder[23], refPreviewPlaceHolder[24] and refPreviewPlaceHolder[25]. The mixture was refluxed for 5 h. For the targeted compounds 12-21 and 28-36, the mixture was evaporated to remove the solvent and the residue was purified by column chromatography (CH2Cl2/MeOH 100:1-10:1). For the targeted compounds 22-27, ethyl ether (15 mL) was added to the residue and the yellow precipitate was collected by filtration. The obtained precipitate was subjected to the hydrogen chloride saturated methanol to afford it as hydrochloride derivative. All the targeted compounds 12-36 show moderate to good yields under this reaction condition with the yields of 60-92%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With piperidine; In methanol; for 5h;Reflux; | General procedure: Piperidine (0.08 mL) was added to methanol (25 mL) dissolved in substituted aldehydes 5-7 (0.18 mmol) and starting 2-indolinone derivatives 8-11 (0.18 mmol) which were prepared as described previously refPreviewPlaceHolder[6], refPreviewPlaceHolder[21], refPreviewPlaceHolder[22], refPreviewPlaceHolder[23], refPreviewPlaceHolder[24] and refPreviewPlaceHolder[25]. The mixture was refluxed for 5 h. For the targeted compounds 12-21 and 28-36, the mixture was evaporated to remove the solvent and the residue was purified by column chromatography (CH2Cl2/MeOH 100:1-10:1). For the targeted compounds 22-27, ethyl ether (15 mL) was added to the residue and the yellow precipitate was collected by filtration. The obtained precipitate was subjected to the hydrogen chloride saturated methanol to afford it as hydrochloride derivative. All the targeted compounds 12-36 show moderate to good yields under this reaction condition with the yields of 60-92%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With piperidine; In methanol; for 5h;Reflux; | General procedure: Piperidine (0.08 mL) was added to methanol (25 mL) dissolved in substituted aldehydes 5-7 (0.18 mmol) and starting 2-indolinone derivatives 8-11 (0.18 mmol) which were prepared as described previously refPreviewPlaceHolder[6], refPreviewPlaceHolder[21], refPreviewPlaceHolder[22], refPreviewPlaceHolder[23], refPreviewPlaceHolder[24] and refPreviewPlaceHolder[25]. The mixture was refluxed for 5 h. For the targeted compounds 12-21 and 28-36, the mixture was evaporated to remove the solvent and the residue was purified by column chromatography (CH2Cl2/MeOH 100:1-10:1). For the targeted compounds 22-27, ethyl ether (15 mL) was added to the residue and the yellow precipitate was collected by filtration. The obtained precipitate was subjected to the hydrogen chloride saturated methanol to afford it as hydrochloride derivative. All the targeted compounds 12-36 show moderate to good yields under this reaction condition with the yields of 60-92%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With piperidine; In methanol; for 5h;Reflux; | General procedure: Piperidine (0.08 mL) was added to methanol (25 mL) dissolved in substituted aldehydes 5-7 (0.18 mmol) and starting 2-indolinone derivatives 8-11 (0.18 mmol) which were prepared as described previously refPreviewPlaceHolder[6], refPreviewPlaceHolder[21], refPreviewPlaceHolder[22], refPreviewPlaceHolder[23], refPreviewPlaceHolder[24] and refPreviewPlaceHolder[25]. The mixture was refluxed for 5 h. For the targeted compounds 12-21 and 28-36, the mixture was evaporated to remove the solvent and the residue was purified by column chromatography (CH2Cl2/MeOH 100:1-10:1). For the targeted compounds 22-27, ethyl ether (15 mL) was added to the residue and the yellow precipitate was collected by filtration. The obtained precipitate was subjected to the hydrogen chloride saturated methanol to afford it as hydrochloride derivative. All the targeted compounds 12-36 show moderate to good yields under this reaction condition with the yields of 60-92%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
64% | With piperidine; In methanol; at 50℃; | Example 20 Preparation of intermediate E/Z-3-(3-Chloro-2-fluoro-benzylidene)-1,3-dihydro-pyrrolo[3,2-b]pyridin-2-one To a suspension of <strong>[32501-05-6]1H-pyrrolo[3,2-b]pyridin-2(3H)-one</strong> (Sinova. 933 mg, 6.96 mmol) in MeOH (35 mL) was added 3-chloro-2-fluorobenzaldehyde (Oakwood, 3.58 g, 22.6 mmol) giving a clear solution. Piperidine (Lancaster, 2.58 g, 30.30 mmol) was added slowly. After stirred for a few minutes, the reaction mixture was heated at 50 C. for 3 h, resulting in a yellow precipitation. The reaction mixture was cooled and the precipitate was filtered, washed with cold MeOH and dried in vacuum to give E/Z-3-(3-chloro-2-fluoro-benzylidene)-1,3-dihydro-pyrrolo[3,2-b]pyridin-2-one as a light yellow crystalline solid (1.22 g, 64%). MS (ES+) m/z [(M+H)+]: 275 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
44%; 36% | With potassium carbonate; In acetonitrile; at 60℃; for 3h; | To a solution of urea derivative 16 (340 mg, 0.88 mmol) in acetonitrile (20 mL) at 60 C was added excess K2CO3 (0.6 g, 4.3 mmol). After stirring for 3 h, excess K2CO3 was filtered and solvent was evaporated under reduced pressure. The formed products were separated by column chromatography (silica gel, EtOAc/hexane, 99:1). The fragmentation product 19 (43 mg, 36%) was isolated as the first fraction. The major product 18 was eluted as the second fraction (210 mg, 44%). 4.5.1 1H-Pyrrolo[3,2-b]pyridin-2(3H)-one (19)21 Colorless viscous liquid. 1H NMR (400 MHz, CDCl3) delta 9.15 (br s, 1H), 8.14 (dd, J=2.4, 4.4 Hz, 1H), 7.08 (br s, 1H), 7.07 (br s, 1H), 3.62 (s, 2H). 13C NMR (100 MHz, CDCl3) delta 175.6, 148.0, 143.1, 137.6, 122.7, 115.9, 37.8. 4.5.2 Diethyl 2,2?-(3,3?-((2-hydroxy-1H-pyrrolo[3,2-b]pyridine-1,3-dicarbonyl) bis (azanediyl)) bis(pyridine-3,2-diyl))diacetate (18). White crystals from EtOAc, mp 186-187 C. 1H NMR (400 MHz, CDCl3) delta 12.52 (s, 1H), 11.28 (s, 1H), 9.71 (s, 1H), 8.43 (dd, J=7.7, 0.9 Hz, 1H), 8.32 (dd, J=4.6, 1.4 Hz, 1H), 8.30 (dd, J=4.7, 1.4 Hz, 1H), 8.26 (dd, J=8.2, 1.5 Hz, 1H), 8.22 (dd, J=8.2, 1.4 Hz, 1H), 7.22 (dd, J=8.2, 4.7 Hz, 1H), 7.15 (dd, J=8.1, 4.7 Hz, 2H), 6.73 (dd, J=7.7, 6.6 Hz, 1H), 4.18 (q, J=7.1 Hz, 2H), 4.14 (q, J=7.1 Hz, 2H), 3.97 (s, 2H), 3.94 (s, 2H), 1.20 (t, J=7.1 Hz, 3H), 1.16 (t, J=7.1 Hz, 3H). 13C NMR (100 MHz, CDCl3) delta 170.0 (2C), 166.2, 163.9, 150.6, 147.3, 146.0, 145.5, 145.4, 143.3, 138.9, 133.1, 132.7, 131.5, 130.8, 128.6, 122.8, 122.7, 122.7, 113.4, 85.3, 61.3 (2C), 40.7, 40.6, 14.1. numax (ATR): 3284, 2983, 1721, 1634, 1594, 1544, 1429, 1397, 1329, 1283, 1216, 1140, 1024. HRMS: m/z [M+Na]+ calcd for C27H26N6O7: 545.17847; found: 545.17686 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
34%; 26% | With potassium carbonate; In acetonitrile; at 60℃; | To a solution of urea derivative 24 (780 mg, 2.61 mmol) in acetonitrile (20 mL) at 60 C was added excess K2CO3 (1.5 g, 0.01 mol). After stirring for 2 h, excess K2CO3 was filtered and solvent was evaporated under reduced pressure. The residue was treated with chloroform, pyrrolo-prydinone 19 was soluble in chloroform and whereas the major product 25 was insoluble. Analytical pure samples were obtained by column chromatography on silica gel eluting with EtOAc/n-hexane (8:2) to give 19 (90 mg, 26%). The major compound 25 was purified by washing with cold methanol (333 mg, 34%). 4.7.1. 2-Hydroxy-N1,N3-diphenyl-1H-pyrrolo[3,2-b]pyridine-1,3-dicarboxamide (25). Brown solid, mp 194-195 C. 1H NMR (400 MHz, DMSO) delta 12.64 (s, 1H), 11.28 (s, 1H), 8.26 (dd, J=7.8, 1.4 Hz, 1H), 8.14 (dd, J=5.1, 1.4 Hz, 1H), 7.75 (d, J=7.6 Hz, 2H), 7.69 (d, J=7.6 Hz, 2H), 7.43 (t, J=7.9 Hz, 2H), 7.34 (t, J=7.9 Hz, 2H), 7.15 (t, J=7.4 Hz, 1H), 7.01 (t, J=7.3 Hz, 1H), 6.87 (dd, J=7.8, 5.1 Hz, 1H). 13C NMR (100 MHz, DMSO) delta 165.4, 163.2, 151.4, 147.8, 141.0, 140.7, 138.4, 129.0, 128.7, 124.4, 123.0, 121.3, 119.4, 118.5, 118.3, 113.2, 85.1. numax (ATR): 3219, 3026, 1694, 1590, 1547, 1498, 1455, 1378, 1310, 1249, 1180, 1077. HRMS: m/z [M+Na]+ calcd for C21H16N4O3: 371.11496; found: 371.11158. |
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