Structure of 324-41-4
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CAS No. : | 324-41-4 |
Formula : | C10H6BrF |
M.W : | 225.06 |
SMILES Code : | FC1=CC2=CC=C(Br)C=C2C=C1 |
MDL No. : | MFCD09763683 |
InChI Key : | CAJAZWLCCNCVEY-UHFFFAOYSA-N |
Pubchem ID : | 345397 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 10 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 51.61 |
TPSA ? Topological Polar Surface Area: Calculated from |
0.0 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.51 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.4 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
4.16 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
4.45 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
4.06 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.72 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.99 |
Solubility | 0.0228 mg/ml ; 0.000101 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.08 |
Solubility | 0.187 mg/ml ; 0.000833 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-5.21 |
Solubility | 0.00138 mg/ml ; 0.00000615 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
Low |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
Yes |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.26 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
1.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.41 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With pyridine hydrogenfluoride; sodium nitrite; at 85℃; for 4h; | Commercially available 6-bromo-2-aminonaphthalene (100 mg, 0.45 mmol) in 4 mL of HF-pyridine was treated with sodium nitrite (101 mg, 1.35 mmol), aged to a thickly turbid mixture after 2 h, heated m a sealed tube at 85 0C for 2 h, the mixture cooled, and partitioned between chloroform and water. The organic phase was separated and concentrated in vacuo to provide the clean 6-bromo-2- fluoronaphthalene product. EXAMPLE 18 was prepared from this 6-bromo-2-fluoronaphthalene intermediate in a manner similar to EXAMPLE 17 above and illustrated in Scheme 5. The desired product was purified via preparative RPHPLC. 1H NMR (CD3OD, 600 MHz) delta 8.54 (d, 1H), 8 05 (dd, 1H), 7.81 (dd, 1H), 7.66-7.38 (m, 2H), 7.54 (dt, 1H), 7.46-7.44 (m, 2H), 7.24 (dt, 1H), 7 12 (t, 1H), 3.20 (t, 2H), 2.83 (t, 2H); LCMS m/z 338 (M++1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
40% | With 2,2'-azobis(isobutyronitrile); Bromotrichloromethane; 2-mercaptopyridine-1-oxide sodium salt; at 100℃; for 0.75h; | Step 2: 2-bromo-6-fluoronaphthalene (6b) 6-fluoro-2-naphthoyl chloride (472 mg, 2.097 mmol, 39.9 % yield) was combined with AIBN (173 mg, 1.052 mmol) in CBrCI3 (10 ml_). That mixture was added slowly to a mixture of 2- Mercaptopyridine N-oxide sodium salt (981 mg, 6.58 mmol) and CBrCI3 (10 mL) at 100 C over 30 min. After the completion of addition, the mixture was stirred for another 15 min, then cooled. The mixture was quenched with H20 and extracted with EtOAc two times, dried over magnesium sulfate, filtered, concentrated. The residue was purified via Biotage (0-5% EtOAc/heptane; SNAP25 column) giving 6b (472 mg, 40%) as white solid. 1H NMR (400 MHz, MeOD) delta ppm 7.34 (td, J=8.84, 2.59 Hz, 1 H) 7.49 - 7.57 (m, 1 H) 7.60 (ddd, J=8.78, 1.96, 0.69 Hz, 1 H) 7.77 (d, J=8.84 Hz, 1 H) 7.87 (dd, J=9.09, 5.56 Hz, 1 H) 8.09 (d, J=1.58 Hz, 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In water; at 20 - 100℃; for 1h;Inert atmosphere; Capped vial; Microwave irradiation; | Example 2075-[(35)-l-(cyclopropylcarbonyl)-3-pyrrolidinyl]methyl}-4-[2-fluoro-4-(6-fluoro-2- naphthalenyl)phenyl]-2,4-dihydro-3H-l,2,4-triazol-3-onea) Into a 5 mL microwaveable vial was placed 4-(4-bromo-2-fluorophenyl)-5-[(35)-l- (cyclopropylcarbonyl)-3-pyrrolidinyl]methyl}-2,4-dihydro-3H-l,2,4-triazol-3-one (0.244 mmol), bis(pinacolato)diboron (0.244 mmol), potassium acetate (0.977 mmol), dichloro [ 1 , 1 ' -bis(diphenylphosphino)ferrocene]palladium(II)-dichloromethane adduct (0.024 mmol), and 1,4-dioxane (2 mL). The vial was capped and the contents were purged with nitrogen. The solution stirred at 100 C for 16 h. LCMS analysis displayed boronic ester intermediate present (boronic ester cleavage to acid also observed on LCMS) as well as a small amount of bromide starting material. The reaction was cooled to room temperature. Added to the vial was <strong>[324-41-4]2-bromo-6-fluoronaphthalene</strong> (0.244 mmol) and 2M aq potassium carbonate (1 mL). The vial was capped, purged with nitrogen, and stirred at 100 C for 1 h. The solution was cooled to room temperature, whereby the dioxane layer separated from the aqueous layer. The dioxane layer was removed via pipette and was passed through a plug of celite and sodium sulfate. The plug was washed with dioxane (2 mL). All dioxane filtrates were combined and concentrated in vacuo. Reverse phase HPLC (30-80% acetonitrile/water + 0.1% NH4OH) was utilized in purifying the title compound (21 mg, 17%). MS(ES)+ m/e 475.1 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium acetate; In N,N-dimethyl-formamide; at 90℃; | General procedure: Aryl halide (1 equiv), bis-pinacolato-diboron (1.5-3 equiv), Pd(dppf)Cl2 (0.05-0.1 equiv), and KOAc (3-6 eq.) were suspended in DMF (2-6 mL). The mixture was then heated at 90 C for 2-6 h, cooled to rt, diluted with H2O (10 mL) and extracted with EtOAc (3 × 5 mL). The organic layer was dried (MgSO4) and the solvent removed in vacuo. The residue was purified by chromatography using a stepped gradient of 0-10% EtOAc in heptane to yield the desired boronic ester. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
15% | With tri-tert-butyl phosphine; palladium diacetate; sodium t-butanolate; In 1,4-dioxane; toluene; at 100℃; for 48h;Sealed tube; Microwave irradiation; | In a sealed 5 mL microwave vial purged with nitrogen, a mixture of 4-cyclopropyl-9-(piperazin- 1 -ylsulfonyl)- 1 -oxa-4,9-diazaspiro [5.5 ]undecan-3 -one hydrochloride (177 mg, 0.448 mmol), <strong>[324-41-4]2-bromo-6-fluoronaphthalene</strong> (101 mg, 0.448 mmol), sodium tert-butoxide (60.3 mg, 0.627 mmol), palladium(II) acetate (5.03 mg, 0.022 mmol),1,4-dioxane (2 mL), and tri-tert-butylphosphine (1M in toluene, 0.025 mL, 0.025 mmol) was stirred for 48 h at 100 C. LCMS analysis was used to monitor the reaction?s progress. It was determined that after 48 h the reaction did not appear to be progress beyond 50% completion. The solution was cooled to room temperature and filtered through a pad of Celite, which was then washed with dioxane (2 mL). The filtrate was concentrated in vacuo and purified byreverse phase HPLC (35-65% acetonitrile w/ 0.1% TFA/water w/ 0.1% TFA). The recovered material was taken up in 1:1 dichloromethane : acetonitrile (2 mL total) and passed throughPL-HCO3 macroporous solid phase extraction plug (100 mg, 0.18 mmol) to neutralize the TFA salt. The plug was washed with a fresh 1:1 dichloromethane : acetonitrile solution (2 mL total). The combined organic filtrate was concentrated in vacuo to afford the titlecompound (33 mg, 15%). MS(ES)+ mle 503.0 [M+H]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | a) A 5 mL microwave vial was charged with 9-[(4-bromo-2,6-difluorophenyl)methyl]-4- cyclopropyl-l-oxa-4,9-diazaspiro[5.5]undecan-3-one (90 mg, 0.217 mmol), bis(pinacolato)diboron (60 mg, 0.236 mmol), potassium acetate (85 mg, 0.867 mmol), Iota,Gamma- bis(diphenylphosphino)ferrocene-palladium(II)dichloride dichloromethane complex (20 mg, 0.024 mmol), and 1,4-dioxane (2 mL). The vial was capped, the contents were purged with nitrogen, and the solution was stirred at 100 C for 2 h. The reaction was cooled to room temperature and <strong>[324-41-4]2-bromo-6-fluoronaphthalene</strong> (50 mg, 0.222 mmol) was added followed by 2M aq. potassium carbonate (1 mL). The vial was capped, purged with nitrogen, and stirred at 100 C for 1 h. The solution was set aside to cool to room temperature and to allow the phases to separate. The dioxane layer was removed and passed through a plug of Celite and sodium sulfate. The plug was washed with dioxane (2 mL). The filtrate was concentrated in vacuo. This was purified by reverse phase HPLC (30-90% acetonitrile /water w/ 0.1% NH4OH) then by reverse phase HPLC (25-55% acetonitrile w/ 0.1% TF A/water w/ 0.1% TFA). The desired fractions were combined and concentrated in vacuo. The recovered material was taken up in 1 : 1 dichloromethane: acetonitrile (2 mL) and passed through a macroporous solid phase extraction plug (PL-HCO3, 100 mg, 0.18 mmol) to neutralize the TFA salt. The column was washed with a fresh solution of 1 : 1 dichloromethane: acetonitrile (2 mL). All of the organic filtrate was concentrated to dryness to afford the title compound (57 mg, 54%). MS (ES)+ m/e 481.1 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
67% | As follows: the formula (6) Compound 9 (1.0g, 4.44mmol) was added to a single neck flask, pumping Vacuum / nitrogen filling repeated five times, followed by the addition of anhydrous THF30mL, isopropanol / liquid nitrogen after freezing to 78 C In30min slowly added dropwise 2.5M nbutyllithium(1.86mL, 4.66mmol), 1h, add isopropanol Pinacol borate (1.13mL,5.55mmol). Reaction 2h, slowly raising the temperature to room temperature, the reaction 8h, After the reaction was added towater, the product was extracted with methylene chloride, the organic phase was dried over anhydrous magnesium sulfate,separated to The solvent, separated and purified by silica gel column chromatography to give a white solid (6) compound 10co 0.8g, yield 67%. | |
65% | A solution of n-BuLi in n-hexane (2.5M, 1.86mL, 4.67mmol) was added dropwise to a solution of <strong>[324-41-4]2-bromo-6-fluoronaphthalene</strong> (1.00g, 4.44mmol) in anhydrous THF (20mL) under nitrogen at-78C. After the reaction was kept at-78C for 1h, isopropoxyboronic acid pinacol ester (1.12mL, 5.56mmol) was added. The mixture was left to warm up to room temperature overnight. Then it was evaporated under vacuum. The residue was treated with water and extracted with CH2Cl2. The organic phase was further washed with water and brine, and dried over MgSO4. Upon concentration under vacuum, the crude product was purified by column chromatography on silica gel using CH2Cl2 as the eluent to obtain a white solid (0.785g, 65%). 1H NMR (300MHz, DMSO): delta 8.25 (s, 1H), 8.09-8.14 (m, 1H), 7.88 (d, J=8.28Hz, 1H), 7.68-7.75 (m, 2H), 7.40-7.46 (m, 1H), 1.31 (s, 12H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With tris(dibenzylideneacetone)dipalladium(0) chloroform complex; 2,2'-bis-(diphenylphosphino)-1,1'-binaphthyl; sodium t-butanolate; In toluene; at 70℃;Inert atmosphere; | 0435] To a solution of <strong>[324-41-4]2-bromo-6-fluoronaphthalene</strong> (1 g, 4.44 mmol) in 30 ml of toluene was added sodium tert-butoxide (0.854 g, 8.89 mmol, 2.0 eq), piperazine (0.764 g, 8.87 mmol, 2.0 eq), BINAP (28 mg, 0.045 mmol, 1 mol %) and Pd2(dba)3.CHCl3 (92 mg, 0.089 mmol, 2 mol %) at 70 C. in an oil bath under an inert atmosphere of nitrogen. The resulting solution was stirred overnight and then concentrated under vacuum. The crude material was purified by silica gel chromatography using 10-20% methanol in dichloromethane to elute. The product-containing fractions were combined and concentrated under vacuum to afford 1-(6-fluoronaphthalen-2-yl)piperazine as a light yellow solid (0.75 g, 73%). (ES, m/z): [M+H]+ 231.1; 1H NMR (300 MHz, CDCl3): delta 7.67-7.73 (m, 2H), 7.29-7.38 (m, 2H), 7.18-7.23 (m, 1H), 7.14 (d, J=1.8 Hz, 1H), 3.24 (dd, J=3.6, 3.9 Hz, 4H), 3.12 (dd, J=3.6, 3.9 Hz, 4H). |