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Structure of 26807-73-8
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 26807-73-8 |
Formula : | C15H14N2 |
M.W : | 222.29 |
SMILES Code : | NC1=CC2=C(N(CC3=CC=CC=C3)C=C2)C=C1 |
MDL No. : | MFCD03070173 |
InChI Key : | UYDNPZLYDODKKA-UHFFFAOYSA-N |
Pubchem ID : | 2794624 |
GHS Pictogram: |
![]() ![]() |
Signal Word: | Danger |
Hazard Statements: | H302-H318 |
Precautionary Statements: | P280-P305+P351+P338 |
Class: | 8 |
UN#: | 3259 |
Packing Group: | Ⅲ |
Num. heavy atoms | 17 |
Num. arom. heavy atoms | 15 |
Fraction Csp3 | 0.07 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 0.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 72.09 |
TPSA ? Topological Polar Surface Area: Calculated from |
30.95 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.25 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-2.79 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.28 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.66 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.69 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.62 |
Log S (ESOL):? ESOL: Topological method implemented from |
0.02 |
Solubility | 232.0 mg/ml ; 1.04 mol/l |
Class? Solubility class: Log S scale |
Highly soluble |
Log S (Ali)? Ali: Topological method implemented from |
2.69 |
Solubility | 110000.0 mg/ml ; 494.0 mol/l |
Class? Solubility class: Log S scale |
Highly soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-5.03 |
Solubility | 0.00208 mg/ml ; 0.00000938 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-9.64 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
1.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.52 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With trifluoroacetic acid; In dichloromethane; at 20℃; | General procedure: To a reaction flask were added 2-chloro-4-tert-butylcarbonylamino-phenol (24.35 g, 100 mmol), 2-chloromethylpyridine hydrochloride (32.8 g, 200 mmol), potassium carbonate (41.4 g, 300 mmol) and tetrabutyl amimonium iodide (1.107 g, 3 mmol). To the flask was added DMF (100ml). The reaction mixture was stirred. After the reaction finished, the reaction solution was poured into water (1 L). The mixture was extracted with ethyl acetate three times. The ethyl acetate layers were combined. The resultant organic layer was washed with water (500 ml) and staturated saline solution (500 ml), successively. The resulting mixture was dried over anhydrous magnesium sulfate for 30 min, filtered and rotary-evaporated to dryness. The resultant substance was purified with column chromatography (eluent: ethyl acetate:petroleum ether = 1:) to give N-(3-chloro-4-(pyridin-2-yl-methoxy)phenyl)-tert-butoxyacylamine.; To a reaction flask was added N-(3-chloro-4-(pyridin-2-yl-methoxy) phenyl)-tert-butoxyacylamine. N-(3-chloro-4-(pyridin-2-yl-methoxy)phenyl)-tert-butoxy acylamine was dissolved with 20% TFA in DCM (50 ml). The mixture was stirred at the room temperature. After the reaction finished, the solvent was rotary-evaporated. The residue was dissolved in DCM (200 ml). The resulting solution was washed with saturated sodium carbonate three times (200 ml×3), with water (200 ml) once, with saturated saline solution (200 ml) once, successively. The resultant substance was dried over anhydrous magnesium sulfate and filtered. The solvent was rotary-evaporated to give the target product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
63% | With iron; acetic acid; In methanol; at 65℃; for 2.0h; | 1-benzyl-5-nitro-1H-indole (500 mg, 1.98 mmol, 1.0 equiv.), reducing iron powder (555 mg,9.9 mmol, 5.0 equiv.) dissolved in an appropriate amount of MeOH, and added with stirring AcOH (594 mg, 9.9 mmol, 5.0 equiv.) at 65Stir at C for 2 hours. The TLC monitors the reaction in real time. After the reaction, the reaction solution was filtered through celite, washed with methanol, and distilled under reduced pressure.The crude product was purified by silica gel column chromatography toield of 1-benzyl-1H-indole-5-amine (280 mg, yield: 63%). |
22.4 g | With water; iron; ammonium chloride; In ethanol; at 70 - 75℃; for 3.5h;Reflux; | [Reference Example 12] (0454) (0455) To the mixture of 45.5 g of 1-benzyl-5-nitro-1H-indole, 6.15 g of ammonium chloride, 360 mL of ethanol and 90 mL of water, 35.2 g of iron powder was added in portions at an external temperature of 70 to 75C, and the resultant was heated at reflux for three hours and 30 minutes. After cooling the reaction mixture to room temperature, water and ethyl acetate were added thereto, and the insoluble matter was filtered off. The filter cake was washed with water and ethyl acetate. The filtrate and the washings were combined, the organic layer was separated, sequentially washed with water and a saturated aqueous sodium chloride solution and then dried over anhydrous magnesium sulfate, and the solvent was distilled off under reduced pressure. Diisopropyl ether and ethyl acetate were added to the obtained residue and the solid was collected by filtration. The obtained solid was purified by silica gel column chromatography (gradient elution with hexane:ethyl acetate = 90:10-50:50), and hexane was added to the thus obtained residue, and the solid was collected by filtration to give 22.4 g of 1-benzyl-1H-indol-5-amine as a pale brown solid. 1H-NMR (DMSO-d6) delta: 4.47 (2H, s), 5.27 (2H, s), 6.17 (1H, d, J = 2.6 Hz), 6.47 (1H, dd, J = 8.6, 2.0 Hz), 6.68 (1H, d, J = 2.0 Hz), 7.08 (1H, d, J = 8.6 Hz), 7.12-7.17 (2H, m), 7.21-7.32 (4H, m). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
13.5 mg (42%) | With toluene-4-sulfonic acid; In hydrogenchloride; 1-methyl-2-pyrrodinone; | EXAMPLE 12 SYNTHESIS OF 5-[4-(1-BENZYL-1H-INDOL-5-YLAMINO)-6-OXO-6,7-DIHYDRO-PYRROLO [2,3-D]PYRIMIDIN-5-YLIDENEMETHYL]-1H-PYRROLE-2-CARBOXYLIC ACID (2-MORPHOLIN-4-YL-ETHYL)-AMIDE HYDROCHLORIDE (FORMULA 12) A mixture of 5-(4-chloro-6-oxo-6,7-dihydro-pyrrolo[2,3-d]pyrimidin-5-ylidenemethyl)-1H-pyrrole-2-carboxylic acid (2-morpholin-4-yl-ethyl)-amide, 1 -benzyl-1H-indol-5-ylamine and p-toluenesulfonic acid (5 mg) in 2 mL of 1-methyl-2-pyrrodinone and 2-methoxyethyl ether (1:3) was heated at 170-185 C. for 7 to 15 hours. The reaction mixture was evaporated to dryness and purified by reversed phase HPLC, then dissolved in 2N HCl and acetonitrile and freeze-dried to give 13.5 mg (42%) of the title compound. MS 589.3 [M++1]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
4. 1-(1-Benzyl-1H-indol-5-yl)-3quinolin-4-ylurea From D4 (0.245 g) and <strong>[26807-73-8]5-amino-1-benzyl-(1H)-indole</strong> D6(C) (0.37 g) the title compound (0.25 g), after column chromatography (silica gel, hexane?ethyl acetate) and trituration with diethyl ether, was prepared according to Example 1, Method 2. 1H NMR delta: 5.41 (2H, s), 7.11-7.42 (8H, m), 7.51 (1H, d), 7.64-7.82 (3H, m), 7.98 (1H, d), 8.21 -8.27 (2H, m), 8.71 (1H, d), 9.14 (1H, bs), 9.23 (1H, bs). m/z (API+): 393 (MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With tris-(dibenzylideneacetone)dipalladium(0); caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In 1,4-dioxane; at 180℃; for 1.0h;Microwave irradiation; | [Example 209] (1259) (1260) The mixture of 221 mg of methyl 3-chloro-6-cyclopropylpicolinate, 253 mg of <strong>[26807-73-8]1-benzyl-1H-indol-5-amine</strong>, 19 mg of tris(dibenzylideneacetone)dipalladium(0), 36 mg of 4,5'-bis(diphenylphosphino)-9,9'-dimethylxanthene, 710 mg of cesium carbonate, and 15 mL of dioxane, was stirred at 180C for one hour using microwave equipment. After cooling the reaction mixture to room temperature, the insoluble matter was filtered off and the solvent was distilled off under reduced pressure. The obtained residue was purified by silica gel column chromatography (gradient elution with hexane:ethyl acetate = 95:5-67:33) to give methyl 3-((1-benzyl-1H-indol-5-yl)amino)-6-cyclopropylpicolinate. MS (ESI, m/z): 398 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.3 g | With tris-(dibenzylideneacetone)dipalladium(0); tert-butyl 5-bromo-2-chloroisonicotinate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In toluene; for 3.0h;Reflux; Inert atmosphere; Sealed tube; | [Example 93] (1023) (1024) The mixture of 245 mg of <strong>[26807-73-8]1-benzyl-1H-indol-5-amine</strong>, 0.28 g of methyl 2-bromo-5-cyclopropylbenzoate, 50 mg of tris(dibenzylideneacetone)dipalladium(0), 64 mg of 4,5'-bis(diphenylphosphino)-9,9'-dimethylxanthene, 0.72 g of cesium carbonate, and 3 mL of toluene, was heated at reflux in a sealed tube for three hours under a nitrogen atmosphere. The reaction mixture was cooled to room temperature, and ethyl acetate and water were then added thereto. The organic layer was separated, sequentially washed with water and a saturated aqueous sodium chloride solution and dried over anhydrous magnesium sulfate, and the solvent was distilled off under reduced pressure. The obtained residue was purified by silica gel column chromatography (gradient elution with hexane:ethyl acetate = 90:10-80:20) to give 0.3 g of methyl 2-((1-benzyl-1H-indol-5-yl)amino)-5-cyclopropylbenzoate as a yellow oil. 1H-NMR (CDCl3) delta: 0.55-0.63 (2H, m), 0.81-0.90 (2H, m), 1.75-1.86 (1H, m), 3.90 (3H, s), 5.32 (2H, s), 6.49 (1H, d, J = 3.3 Hz), 6.92-7.07 (3H, m), 7.10-7.17 (3H, m), 7.21-7.36 (4H, m), 7.49 (1H, d, J = 2.0 Hz), 7.68 (1H, d, J = 2.0 Hz), 9.20 (1H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
122 mg | With tris-(dibenzylideneacetone)dipalladium(0); tert-butyl 5-amino-1-benzyl-1H-indole-2-carboxylate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In toluene; for 3.16667h;Reflux; Inert atmosphere; | [Example 113] (1065) (1066) The mixture of 80 mg of <strong>[26807-73-8]1-benzyl-1H-indol-5-amine</strong>, 100 mg of methyl 2-iodo-5-isopropylbenzoate, 15 mg of tris(dibenzylideneacetone)dipalladium(0), 19 mg of 4,5'-bis(diphenylphosphino)-9,9'-dimethylxanthene, 214 mg of cesium carbonate, and 2 mL of toluene, was heated at reflux for three hours and 10 minutes under a nitrogen atmosphere. The insoluble matter was filtered off and the solvent was distilled off under reduced pressure. The obtained residue was purified by silica gel column chromatography (gradient elution with hexane:ethyl acetate = 100:0-80:20) to give 122 mg of methyl 2-((1-benzyl-1H-indol-5-yl)amino)-5-isopropylbenzoate as a yellow oil. MS (ESI, m/z): 399 (N4+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With tris-(dibenzylideneacetone)dipalladium(0); caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In toluene; at 190℃; for 1.5h; | [Example 205] (1250) (1251) To the solution of 108 mg of 2-bromo-5-methylbenzoic acid in 10 mL of methanol, 0.5 mL of concentrated sulfuric acid was added, and the resultant was heated at reflux for three hours. The reaction mixture was cooled to room temperature, and a saturated aqueous sodium bicarbonate solution and ethyl acetate were then added thereto. The organic layer was separated and dried over anhydrous magnesium sulfate, and the solvent was distilled off under reduced pressure to give methyl 2-bromo-5-methylbenzoate. (1252) To the obtained methyl 2-bromo-5-methylbenzoate, 110 mg of <strong>[26807-73-8]1-benzyl-1H-indol-5-amine</strong>, 10 mg of tris(dibenzylideneacetone)dipalladium(0), 18 mg of 4,5'-bis(diphenylphosphino)-9,9'-dimethylxanthene, 342 mg of cesium carbonate and 4 mL of toluene were added, and the resultant was stirred at 190C for one hour and 30 minutes using microwave equipment. After cooling the reaction mixture to room temperature, the insoluble matter was filtered off and the solvent was distilled off under reduced pressure. The obtained residue was purified by silica gel column chromatography (gradient elution with hexane:ethyl acetate = 100:0-75:25) to give methyl 2-((1-benzyl-1H-indol-5-yl)amino)-5-methylbenzoate as a yellow oil. MS (ESI, m/z): 371 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
132 mg | With tris-(dibenzylideneacetone)dipalladium(0); tert-butyl 5-amino-1-benzyl-1H-indole-2-carboxylate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In acetic acid butyl ester; for 4.08333h;Reflux; Inert atmosphere; | [Example 127] (1093) (1094) The mixture of 100 mg of <strong>[26807-73-8]1-benzyl-1H-indol-5-amine</strong>, 103 mg of methyl 2-chloro-5-cyclopentylnicotinate, 20 mg of tris(dibenzylideneacetone)dipalladium(0), 25 mg of 4,5'-bis(diphenylphosphino)-9,9'-dimethylxanthene, 280 mg of cesium carbonate, and 1 mL of butyl acetate, was heated at reflux for four hours and five minutes under a nitrogen atmosphere. The reaction mixture was cooled to room temperature, and ethyl acetate and water were then added thereto. The organic layer was separated, washed with a saturated aqueous sodium chloride solution and dried over anhydrous sodium sulfate, and the solvent was distilled off under reduced pressure. The obtained residue was purified by silica gel column chromatography (gradient elution with hexane:ethyl acetate = 100:0-30:70). Diisopropyl ether was added to the thus obtained residue, and the solid was collected by filtration to give 132 mg of methyl 2-((1-benzyl-1H-indol-5-yl)amino)-5-cyclopentylnicotinate as a yellow solid. 1H-NMR (DMSO-d6) delta: 1.41-1.82 (6H, m), 1.95-2.05 (2H, m), 2.86-2.99 (1H, m), 3.89 (3H, s), 5.40 (2H, s), 6.44 (1H, d, J = 2.6 Hz), 7.15-7.39 (7H, m), 7.48 (1H, d, J = 3.3 Hz), 7.96 (1H, d, J = 2.0 Hz), 8.06 (1H, d, J = 2.6 Hz), 8.28 (1H, d, J = 2.6 Hz), 9.84 (1H, s). MS (ESI, m/z): 426 (M+H)+, 424 (M-H)-. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91 mg | With tris-(dibenzylideneacetone)dipalladium(0); tert-butyl 4-((5-amino-1H-indol-1-yl)methyl)piperidine-1-carboxylate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In acetic acid butyl ester; for 2.33333h;Reflux; | [Example 115] (1069) (1070) The mixture of 97 mg of <strong>[26807-73-8]1-benzyl-1H-indol-5-amine</strong>, 100 mg of methyl 2-chloro-5-(trifluoromethyl)nicotinate, 19 mg of tris(dibenzylideneacetone)dipalladium(0), 24 mg of 4,5'-bis(diphenylphosphino)-9,9'-dimethylxanthene, 272 mg of cesium carbonate, and 1 mL of butyl acetate, was heated at reflux for 2 hours and 20 minutes. The reaction mixture was cooled to room temperature, and ethyl acetate and water were then added thereto. The organic layer was separated, washed with a saturated aqueous sodium chloride solution and dried over anhydrous sodium sulfate, and the solvent was distilled off under reduced pressure. The obtained residue was purified by silica gel column chromatography (gradient elution with hexane:ethyl acetate = 100:0-50:50). Water and methanol were added to the thus obtained residue, and the solid was collected by filtration to give 91 mg of methyl 2-((1-benzyl-1H-indol-5-yl)amino)-5-(trifluoromethyl)nicotinate as a yellow solid. 1H-NMR (DMSO-d6) delta: 3.93 (3H, s), 5.43 (2H, s), 6.48 (1H, d, J = 2.6 Hz), 7.18-7.34 (6H, m), 7.43 (1H, d, J = 8.6 Hz), 7.54 (1H, d, J = 3.3 Hz), 7.88 (1H, d, J = 2.0 Hz), 8.38 (1H, d, J = 2.6 Hz), 8.66 (1H, d, J = 2.0 Hz), 10.20 (1H, s). MS (ESI, m/z): 426 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With tris-(dibenzylideneacetone)dipalladium(0); caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In toluene; at 190℃; for 1.0h;Microwave irradiation; | [Example 228] (1297) (1298) To tert-butyl 5-bromo-2-chloroisonicotinate obtained in Reference Example 71, 111 mg of <strong>[26807-73-8]1-benzyl-1H-indol-5-amine</strong>, 10 mg of tris(dibenzylideneacetone)dipalladium(0), 18 mg of 4,5'-bis(diphenylphosphino)-9,9'-dimethylxanthene, 342 mg of cesium carbonate and 4 mL of toluene were added, and the resultant was stirred at 190C for one hour using microwave equipment. After cooling the reaction mixture to room temperature, the insoluble matter was filtered off and the solvent was distilled off under reduced pressure. The obtained residue was purified by silica gel column chromatography (gradient elution with hexane:ethyl acetate = 100:0-80:20) to give tert-butyl 5-((1-benzyl-1H-indol-5-yl)amino)-2-chloroisonicotinate. MS (ESI, m/z): 434 (M+H)+. |
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