Structure of 219599-99-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 219599-99-2 |
Formula : | C13H19F3N4 |
M.W : | 288.31 |
SMILES Code : | FC(C1=CC(N2CCNCC2)=NC(C(C)(C)C)=N1)(F)F |
MDL No. : | MFCD09910208 |
InChI Key : | LNKWEXSUCTYYAC-UHFFFAOYSA-N |
Pubchem ID : | 18399610 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 20 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.69 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 6.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 77.66 |
TPSA ? Topological Polar Surface Area: Calculated from |
41.05 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.8 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.63 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.59 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.03 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.75 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.56 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.31 |
Solubility | 0.142 mg/ml ; 0.000492 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.14 |
Solubility | 0.208 mg/ml ; 0.00072 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.24 |
Solubility | 0.0166 mg/ml ; 0.0000574 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
Yes |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.19 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.76 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
b) 1-{4-[4-(2-tert-Butyl-6-trifluoromethylpyrimidin-4-yl)piperazin-1-yl]butyl}azepane-2,5-dione Analogously to Example 3b, 0.04 g of the title compound was obtained from 2-tert-butyl-4-piperazin-1-yl-6-trifluoromethylpyrimidine (0.59 mmol, 0.17 g) and 1-(4-chlorobutyl)azepane-2,5-dione (0.62 mmol, 0.17 g). ESI-MS: [M+H+]=470.2, 235.6; 1H NMR (400 MHz, CDCl3) delta (ppm): 6.57 (1H, s), 3.71 (4H, s br.), 3.60-3.46 (4H, m), 2.73-2.57 (6H, m), 2.49 (4H, s br.), 2.41 (2H, s br.), 1.33 (9H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In N-methyl-acetamide; ethyl acetate; | b) 1-(4-{4-[2-tert-Butyl-6-(trifluoromethyl)pyrimidin-4-yl]piperazin-1-yl}butyl)-3,4-dihydro-1H-1-benzazepine-2,5-dione 1-(4-Chlorobutyl)-3,4-dihydro-1H-1-benzazepine-2,5-dione (3.29 mmol, 1.75 g, 70%), <strong>[219599-99-2]2-tert-butyl-4-piperazin-1-yl-6-(trifluoromethyl)pyrimidine</strong> (3.56 mmol, 1.03 g; preparation according to WO 99/02503) and triethylamine (13.17 mmol, 1.33 g) in dimethylformamide (100 ml) were stirred at 100 C. for 12 h. Afterward, ethyl acetate was added and the mixture was washed twice with water. The combined organic phases were dried over Na2SO4, filtered and concentrated under reduced pressure. The oily residue was purified by chromatography on silica gel (eluent: 95:5 v/v dichloromethane:methanol); yield 0.42 g. ESI-MS: 519.2, [M+H+]=518.2, 259.6; 1H NMR (500 MHz, CDCl3) delta (ppm): 7.57-7.52 (2H, m), 7.29 (1H, t), 7.25 (1H, d+CHCl3), 6.57 (1H, s), 3.92 (2H, s br.), 3.63 (4H, s br.), 3.01-2.95 (2H, m), 2.80 (2H, t), 2.41 (4H, t), 2.28 (2H, t), 1.53 (2H, quint.), 1.42 (2H, quint.), 1.34 (9H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In DMF (N,N-dimethyl-formamide); at 110.0℃; for 24.0h; | Man ruehrte 1, 5 g (7, 0 MMOL) 1- (4-CHLORBUTYL)-4-HYDROXY-5-METHYLPYRIMIDIN-2 (1H)-ON aus Beispiel 5. 2. 1, 2, 0 g (7, 0 MMOL) 2-TEFF-BUTYL-4-PIPERAZIN-1-YL-6- (trifluormethyl) pyrimidin (DE 197 35 410) und 1, 4 g (14, 0 MMOL) NEt3 in 100 mi N, N- Dimethylformamid (DMF) 24 Stunden bei 110 C. Danach gab man Essigsaeureethyles- ter zu und wusch das Gemisch zweimal mit Wasser. Man trocknete die vereinten orga- nischen Phasen ueber NA2S04, filtrierte das Trockenmittel ab und engte im Vakuum ein. Man reinigte den oeligen Rueckstand durch Chromatographie an Kieselgel (Eluierungs- mittel : Dichlormethan : Methanol 95 : 5 V/V), ruehrte ihn mit Pentan aus und saugte ab. Man nahm den Feststoff in wenig Methylenchlorid auf und gab eine Loesung von HCI in Diethylether zu, wobei das Wertprodukt als Hydrochlorid ausfiel. Man saugte das Hyd- rochlorid ab, wusch mit Diethylether und trocknete die Titelverbindung im Vakuum bei 40 C. Ausbeute : 1, 1 g. ESI-MS : 470, 5, [M+H+] = 469, 5, 235, 3 ; 1H-NMR (500 MHz, DMSO-D6) 8 (ppm) : 11, 57 (1H, s. br.), 11, 23 (1H, s.), 7, 62 (1H, s.), 7, 24 (1H, s.), 4, 68 (2H, s. br.), 3, 65 (2H, t), 3, 55 (4H, d br.), 3, 14-3, 00 (4H, m), 1, 82- 1, 71 (3+2H, s+m), 1, 68-1, 59 (2H, m), 1, 31 (9H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In ethanol; water; | 2-t-Butyl-4-(1-piperazinyl)-6-trifluoromethylpyrimidine (3) A solution of 60 g (0.25 mol) of the chloropyrimidine described above in 200 ml of ethanol was added dropwise to a boiling solution of 129 g (1.5 mol) of piperazine in 500 ml of ethanol over the course of 2 h, and then the mixture was boiled for a further 6 h. After the reaction was complete, the solvent was removed under reduced pressure, and the residue was mixed with 2 l of water. The product crystallized on cooling and was then filtered off with suction. 1H-NMR (250 MHz, CDCl3): delta=1.3 (s, 9H); 1.8 (s, 1H); 3.0 (m, 4H); 4.7 (m, 4H); 6.6 (s, 1H) ppm. | |
In ethanol; water; | 2-t-Butyl-4-(1-piperazinyl)-6-trifluoromethylpyrimidine (3) A solution of 60 g (0.25 mol) of the chloropyrimidine described above in 200 ml of ethanol was added dropwise to a boiling solution of 129 g (1.5 mol) of piperazine in 500 ml of ethanol over the course of 2 h, and then the mixture was boiled for a further 6 h. After the reaction was complete, the solvent was removed under reduced pressure, and the residue was mixed with 2 l of water. The product crystallized on cooling and was then filtered off with suction. Yield: 56 g (77% of theory) C13H19ClF3N4 (MW 288) m.p. 78-80 C. 1H-NMR (250 MHZ, CDCl3): d=1.3 (s, 9H); 1.8 (s, 1H); 3.0 (m, 4H); 4.7 (m, 4H); 6.6 (s, 1H) ppm. | |
In ethanol; water; | 2-t-Butyl-4-(l-piperazinyl)-6-trifluoromethylpyrimidine (3) A solution of 60 g (0.25 mol) of the chloropyrimidine described above in 200 ml of ethanol was added dropwise to a boiling solution of 129 g (1.5 mol) of piperazine in 500 ml of ethanol over the course of 2 h, and then the mixture was boiled for a further 6 h. After the reaction was complete, the solvent was removed under reduced pressure, and the residue was mixed with 2 l of water. The product crystallized on cooling and was then filtered off with suction. Yield: 56 g (77% of theory); C13H19ClF3N4 (MW 288) m.p. 78-80 C.; 1H-NMR (250 MHZ, CDCl3): d=1.3 (s, 9H); 1.8 (s, 1H); 3.0 (m, 4H); 4.7 (m, 4H); 6.6 (s, 1H) ppm. |
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