Structure of 215364-86-6
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CAS No. : | 215364-86-6 |
Formula : | C6H7BrN2O |
M.W : | 203.04 |
SMILES Code : | NC1=C(Br)C(OC)=NC=C1 |
MDL No. : | MFCD11656225 |
InChI Key : | FJBMTFANAYFWPT-UHFFFAOYSA-N |
Pubchem ID : | 45588365 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 42.83 |
TPSA ? Topological Polar Surface Area: Calculated from |
48.14 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.73 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.17 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.44 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.72 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.31 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.27 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.21 |
Solubility | 1.24 mg/ml ; 0.00611 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.78 |
Solubility | 3.4 mg/ml ; 0.0167 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.65 |
Solubility | 0.453 mg/ml ; 0.00223 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.71 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.83 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96.6% | With N-Bromosuccinimide; In dichloromethane; at 25℃; for 4h; | To a solution of 2-methoxypyridin-4-amine (5.0 g, 40.28 mmol) in DCM (10 mL) was added NBS (7.17 g, 40.28 mmol) at 0C. Then the reaction mixture was stirred at 25C for 4 hrs. The solvent was removed under reduced pressure. The residue was purified by column chromatography (SiO2, Petroleum ether/EtOAc=5/1 to 2/1) to give the title compound (7.9 g, 38.91 mmol, 96.60% yield) as a yellow oil.1H NMR (400 MHz, CDCl3) d = 7.67 (d, J = 5.6 Hz, 1H), 6.26 (d, J = 5.6 Hz, 1H), 3.90 (s, 3H). |
92% | With N-Bromosuccinimide; In dichloromethane; at 0 - 30℃; for 0.5h; | Synthesis of 3-bromo-2-methoxypyridin-4-amine (2) To a solution of 2-methoxypyridin-4-amine (1, 20.0 g, 161.2 mmol) in dichloromethane (200 mL) at 0 C., N-bromo succinimide (26.6 g, 161.2 mmol) was added and the reaction mixture was stirred at 30 C. for 30 min. After completion, the mixture was quenched with ice cold water (100 mL) and the reaction mass was extracted with dichloromethane (300 mL). The organic layer was washed with water and brine, dried over anhydrous sodium sulfate, filtered and concentrated. The crude was triturated with n-pentane and diethyl ether to afford 3-bromo-2-methoxypyridin-4-amine (2) as yellow solid. Yield: 30.0 g, 92%; MS (ESI) m/z 203.09[M+1]+. |
90% | With N-Bromosuccinimide; In dichloromethane; at 5℃; for 0.5h; | A solution of bromosuccimide (2.15 g, 12.083 mmol) in DCM (25 mL) was added dropwise to a solution of 2-methoxy-pyridin-4-ylamine (1.5 g, 12.083 mmol) in DCM (85 mL) maintaining the temperature below 5 C. The reaction was continued for 30 minutes and then concentrated dry. The residue was taken in EA (50 mL) and washed with water (40 mL) and brine (20 mL). Drying over MgSO4, filtering, and solvent removal afforded the crude product that further purified by chromatography over silica gel (gradient of EA in heptane from 0 to 30%) to a pure oil (2.23 g, 90%). 1H NMR (300 MHz, Chloroform-d) δ 3.96 (s, 3H), 4.59 (s, 2H), 6.28 (d, J=5.6 Hz, 1H), 7.72 (d, J=5.6 Hz, 1H). MS m/z 203 (MH+). |
89% | With N-Bromosuccinimide; In dichloromethane; at 0 - 20℃; for 2h; | 3-bromo-2-methoxypyridin-4-amine (i42): To a stirred solution of 2-methoxypyridin-4-amine (2 g, 16 mmol) in DCM (1 14 mL), NBS (2.87 g, 16 mmol) was slowly added at 0C and the reaction was stirred at room temperature for 2h. The progress of the reaction was monitored by TLC. After completion , the solvent was concentrated under reduced pressure. The crude product was purified by silica gel (100:200 mesh) column chromatography using 15% ethyl acetate in n-hexanes as eluent to afford 3- bromo-2-methoxypyridin-4-amine (i42) (2.9 g, Yield 89%). 1H NMR (400 MHz, Chloroform-d) δ 3.97 (s, 3H), 4.58 (s, 2H), 6.29 (d, J = 5.7 Hz, 1 H), 7.73 (d, J = 5.6 Hz, 1 H). MS (ESI) m/e (M+1 )+: 203 |
81% | With N-Bromosuccinimide; In acetonitrile; at 20℃; for 1h;Cooling with ice; | 2-Methoxy-4-aminopyridine (3.81 g, 27.5 mmol)And NBS (5 g, 28 mmol) were dissolved in 25 ml and 40 ml of acetonitrile, respectively,Then, NBS dissolved in acetonitrile was added dropwise to the reaction solution under ice-cooling,Followed by reaction at room temperature for 1 h.After completion of the reaction, the reaction solvent was removed and extracted with ethyl acetate. After completion of the extraction, the solvent was removed and recrystallized from acetone to give Compound 34a (895 mg, 81%). |
77% | With N-Bromosuccinimide; In acetonitrile; at 0 - 20℃; | 2-methoxy-4-aminopyridine (5 g, 40.3 mmol) was dissolved in MeCN and NBS (7.18 g, 40.3 mmol) was added therein in portions at 0 C. The mixture was slowly raised to room temperature and was allowed to react with stirring and the reaction was monitored by TLC. After the reaction was completed, the resultant was diluted with EA, washed with saturated NH4Cl solution, sodium hydrosulfite and saturated NaCl, dried over anhydrous Na2SO4 and concentrated under reduced pressure, and the residue was purified by column chromatography to give the title compound, yield 77%. 1H NMR (300 MHz, CDCl3) δ 7.57 (d, 1H), 6.36 (d, 1H), 6.20 (s, 2H), 3.7 (s, 3H). |
With N-Bromosuccinimide; In acetonitrile; at 10℃; | The 2-[2-methoxy-4-(7-methoxy-l,6-naphthyridin-4-yloxy)phenyl]acetic acid used as a starting material was prepared as follows :-; A solution of iV-bromosuccinimide (9.8 g) in acetonitrile (80 ml) was added dropwise to a stirred solution of 2-methoxypyridine-4-amine CHeIv. Chim. Acta, 1964, 363-376; 6.82 g) in acetonitrile (40 ml) that had been cooled to 10C. The mixture was concentrated by evaporation. The oily residue was triturated under a mixture of diethyl ether and petroleum ether (b.p. 40-60C). There was thus obtained 3-bromo-2-methoxypyridine-4-amine as a solid (11 g); 1R NMR Spectrum: (DMSOd6) 3.8 (s, 3H), 6.21 (br s, 2H), 6.35 (d, IH), 7.59 (d, IH); Mass Spectrum: M+H4" 203 and 205. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | In isopropyl alcohol; at 110℃; for 3h; | 1 eq of 3-bromo-2-methoxy-4-aminopyridine was dissolved in isopropanol, then 2 eq of compound 49 was added thereto. After heating to 110 C., the mixture was allowed to react for 1 h with stirring, and then a large amount of solid was precipitated. 2 h later, the solid was cooled to room temperature, washed with isopropanol and ether to give the product compound 57, yield 92%; The compound obtained above was suspended in diphenyl ether at 10 ml/g, and the mixture was heated to 220 C. and allowed to react for 1 h with stirring, and then a large amount of solid was precipitated, which was cooled to room temperature, washed with a large amount of petroleum ether and filtered to give the compound 58, yield 96%. The above solid was dissolved in methanol, and 2 eq of ammonium formate was added therein followed by the addition of 10 wt % of 10% Pd/C. The mixture was allowed to react with stirring at 60 C. and the reaction was monitored by TLC. After the reaction was completed, the resultant was cooled and filtered, the filtrate was concentrated and then extracted with EA, washed with saturated NaCl, dried over anhydrous Na2SO4 and concentrated under reduced pressure to give the compound 59. 1H NMR (400 MHz, DMSO) δ 8.89 (s, 1H), 8.46 (s, 1H), 7.87 (d, J=7.6 Hz, 1H), 6.75 (s, 1H), 5.97 (d, J=7.6 Hz, 1H), 3.91 (s, 3H). |
In isopropyl alcohol; at 20 - 75℃; for 0.75h; | 5-(Methoxymethylidene)-2,2-dimethyl-l,3-dioxane-456-dione (12.1 g) was added to a suspension of 3-bromo-2-methoxypyridine-4-amine (17 g) in isopropanol (160 ml) at ambient temperature. The resultant mixture was stirred and heated to 75C for 45 minutes. The mixture was cooled to ambient temperature and diluted with diethyl ether. The precipitate was5 isolated. There was thus obtained 5-[(3-bromo-2-methoxypyridin-4-ylamino)methylidene]- 2,2-dimethyl-l,3-dioxane-4,6-dione (17 g); 1H NMR Spectrum: (DMSOd6) 1.71 (s, 6H), 3.96 (s, 3H), 7.57 (d, IH), 8.15 (d, IH)5 8.86 (d, IH), 11.58 (br d, IH); Mass Spectrum: M+H+ 357 and 359. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Methanol (350 mL) was charged in a two-neck round bottom flask equipped with a guard tube and septum and cooled to 0 0C. Sodium metal (23 g) was added to it slowly in pieces. After all sodium metal had dissolved, 4-amino-3-bromo-2-chloro pyridine (23 g, 178 mmol) was added and the solution was heated at 180 0C in a pressure vessel for 5-6 h. The reaction mixture was then cooled to 0 0C and adjusted to pH 8 by addition of cone. HCl. Solvent was removed under reduced pressure and the residue was suspended in ethyl acetate, ndissolved impurities were removed by filtration and the filtrate was concentrated under reduced pressure to obtain pure product . | ||
Step 2: 4-amino-3-bromo-2-methoxypyridine Methanol (350 mL) was charged in a two-neck RBF equipped with a guard tube and septum and cooled to 0 C. Sodium metal (23 g) was added to it slowly in pieces. After all sodium metal had dissolved, 4-amino-3-bromo-2-chloro pyridine (23 g, 178 mmol) was added and the solution was heated at 180 C. in a pressure vessel for 5-6 h. The reaction mixture was then cooled to 0 C. and adjusted to pH 8 by addition of conc. HCl. Solvent was removed under reduced pressure and the residue was suspended in ethyl acetate. Undissolved impurities were removed by filtration and the filtrate was concentrated under reduced pressure to obtain pure product. | ||
Step 2: 4-amino-3-bromo-2-methoxypyridine; Methanol (350 mL) was charged in a two- neck RBF equipped with a guard tube and septum and cooled to 0 0C. Sodium metal (23 g) was added to it slowly in pieces. After all sodium metal had dissolved, 4-amino-3- bromo-2-chloro pyridine (23 g, 178 mmol) was added and the solution was heated at 180 0C in a pressure vessel for 5-6 h. The reaction mixture was then cooled to 0 0C and adjusted to pH 8 by addition of cone. HCl. Solvent was removed under reduced pressure and the residue was suspended in ethyl acetate. Undissolved impurities were removed by filtration and the filtrate was concentrated under reduced pressure to obtain pure product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A two necked round bottomed flask equipped with a reflux condenser was charged with Meldrum's acid (15.6 g, 108 mmol) and trimethyl orthoformate (143 mL) . The reaction mixture was heated 100 0C for 2 h. 4-amino-3-bromo-2-methoxypyridine (22 g, 108 mmol) was added and heating was continued for an additional 4 h at 100 0C. The reaction mixture was allowed to cool to RT, diluted with hexane and filtered to obtain the product as a yellow solid. | ||
Step 3: 5-[(3-Bromo-2-methoxy-pyridin-4-ylamino)-methylene]-2,2-dimethyl-[1,3]dioxane-4,6-dione A two necked RBF equipped with a reflux condenser was charged with Meldrum's acid (15.6 g, 108 mmol) and trimethyl orthoformate (143 mL). The reaction mixture was heated 100 C. for 2 h. 4-amino-3-bromo-2-methoxypyridine (22 g, 108 mmol) was added and heating was continued for an additional 4 h at 100 C. The reaction mixture was allowed to cool to RT, diluted with hexane and filtered to obtain the product as a yellow solid. | ||
Step 3: 5-F(3-Bromo-2-methoxy-pyridin-4-ylamino>methylene1-2.2-dimethyl- ϖ.31dioxane-4.6-dione; A two necked RBF equipped with a reflux condenser was charged with Meldrum's acid (15.6 g, 108 mmol) and trimethyl orthoformate (143 mL). The reaction mixture was heated 100 0C for 2 h. 4-amino-3-bromo-2-methoxypyridine (22 g, 108 mmol) was <n="49"/>added and heating was continued for an additional 4 h at 100 0C. The reaction mixture was allowed to cool to RT, diluted with hexane and filtered to obtain the product as a yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
143 mg | With chloro[2-(dicyclohexylphosphino)-3 ,6-dimethoxy-2’,4’, 6’-triisopropyl- 1,1’-biphenyl] [2-(2-aminoethyl)phenyl]palladium(II); lithium hexamethyldisilazane; In tetrahydrofuran; at 40℃;Inert atmosphere; | General procedure: Step 1: A vial equipped with a magnetic stir bar was charged with the ortho-haloaminopyridine and BrettPhos G1 precatalyst (6 mol %). The vial was sealed with a teflon screw cap, and evacuated and backfilled with argon three times. The amine (1 to 1.5 mol eq) was added via syringe, followed by LiHMDS solution (1M in THF, 2.5 mol eq). Amines that were solid at room temperature were added with the catalyst. The reaction mixture was stirred at 40 C for 4-18 h, until LC/MS indicated complete conversion of the starting material. The mixture was cooled to room temperature, diluted with dichloromethane, and poured into water. The organic phase was separated and the aqueous phase was extracted twice more with dichloromethane. The combined organic phases were dried over Na2SO4. The solvent was removed under reduced pressure. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With N-iodo-succinimide; acetic acid; In acetonitrile; at 20℃; for 16h; | 3-bromo-5-iodo-2-methoxypyridin-4-amine (i43): To a stirred solution of <strong>[215364-86-6]3-bromo-2-methoxypyridin-4-amine</strong> (i42) (2.9 g, 14.3 mmol) in acetonitrile (122 mL) and acetic acid (3 ml_), NIS (3.55 g, 15.7 mmol) was added and the reaction was stirred at room temperature for 16h. The progress of the reaction was monitored by TLC. After completion of the reaction, the solvent was removed under reduced pressure. The residue was dissolved in ethyl acetate and washed with water. The organic layer was separated, dried over anhydrous sodium sulphate and concentrated under reduced pressure. The crude product was purified by silica gel (100:200 mesh) column chromatography using 10% ethyl acetate in n-hexanes as eluent to afford 3-bromo-5-iodo-2-methoxypyridin-4-amine (i43) (4.6 g, Yield 97%). 1H NMR (400 MHz, DMSO-d6) δ 3.82 (s, 3H), 6.07 (s, 2H), 8.05 (s, 1 H). MS (ESI) m/e (M+1 )+: 330.95 |
92% | With N-iodo-succinimide; acetic acid; In acetonitrile; at 20℃; for 16h; | To a solution of <strong>[215364-86-6]3-bromo-2-methoxypyridin-4-amine</strong> (4.0 g, 19.8 mmol, 1.0 equiv.) in acetonitrile (30 mL) and acetic acid (4.1 mL) was added NIS (4.9 g, 21.7 mmol, 1.1 equiv.), and the reaction mixture was stirred at room temperature for 16 h. Then the solvent was removed under reduced pressure. The residue was dissolved in EtOAc (50 mL) and washed with water (50 mL x 2). The organic layer was dried over anhydrous Na2S04 and concentrated under reduced pressure. The crude product was purified by flash chromatography on silica gel (eluent: PE/EtOAc = 4/1) to afford 3-bromo-5-iodo-2-methoxypyridin- 4-amine (6.0 g, 92% yield) as a white solid. LC-MS: m/z 329 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | Synthesis of 1-(4-amino-2-methoxypyridin-3-yl)ethan-1-one (3) To a solution of <strong>[215364-86-6]3-bromo-2-methoxypyridin-4-amine</strong> (2, 25.0 g, 123.7 mmol) in toluene (250 mL), tributyl(1-ethoxyvinyl)stannane (2a, 67.01 g, 185.0 mmol) were added at room temperature and the reaction mixture was degassed with argon for 15 min. Bis(triphenylphosphine)palladium(II) chloride (8.6 g, 12.3 mmol) was added to the reaction, continued degassing for 5 min and heated the reaction mixture at 100 C. for 16 h. After completion, the reaction mass was diluted with ethyl acetate (300 mL) and washed with water. The organic layer was separated and dried over sodium sulphate, filtered and concentrated to give crude. The crude was treated with 1N hydrochloric acid (100 mL) and the reaction mixture was stirred at room temperature for 1 h. The mixture was then basified with Sodium bicarbonate solution up to pH˜7 and extracted with ethyl acetate (300 mL) and washed with water. The organic layer was separated and dried over sodium sulphate, filtered and concentrated to give crude. The crude was purified by silica gel column chromatography eluting with 10% ethyl acetate in hexane. The desired fractions were concentrated to afford 1-(4-amino-2-methoxypyridin-3-yl) ethan-1-one (3) as off white solid. Yield: 10.0 g, 65%; MS (ESI) m/z 167.16[M+]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | A solution of 2,2-dimethyl-1,3-dioxane-4,6-dione(1.44 g, 10 mmol)Dissolved in isopropanol and then added triethyl orthoformate, heated to 100 C reaction 1h,Cooling to room temperature after a large number of solid precipitation,Filtration gave a white solid compound,No direct reaction to the next step.The unreacted compound and 34a (1.05 g, 5 mmol) were dissolved in isopropanol,The temperature was raised to 80 C for 1 h,After completion of the reaction, the mixture was cooled to room temperature and a large amount of white solid was produced.After filtration, a solid powder was obtained which was washed with a small amount of ethyl acetate to obtain a large amount of white powder 34b (1.5 g, 92%). |
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