Structure of 211244-81-4
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CAS No. : | 211244-81-4 |
Formula : | C8H7N3OS |
M.W : | 193.23 |
SMILES Code : | O=C1C=CC2=CN=C(SC)N=C2N1 |
MDL No. : | MFCD03084167 |
InChI Key : | WPUAPGRZGJOIBX-UHFFFAOYSA-N |
Pubchem ID : | 1234763 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 13 |
Num. arom. heavy atoms | 10 |
Fraction Csp3 | 0.12 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 51.88 |
TPSA ? Topological Polar Surface Area: Calculated from |
83.94 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.68 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.79 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.04 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.95 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.1 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.31 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.04 |
Solubility | 1.77 mg/ml ; 0.00914 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.13 |
Solubility | 1.42 mg/ml ; 0.00735 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.36 |
Solubility | 0.0836 mg/ml ; 0.000433 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.92 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.76 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
140 mg (69%) | With NaH; In N-methyl-acetamide; ethyl acetate; mineral oil; | Example 33 8-Isopropyl-<strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> To a suspension of NaH (48 mg of a 60% suspension of NaH in mineral oil) in 6 mL of dimethylformamide was added <strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> (158 mg, 0.82 mmol). The reaction mixture was heated to 50 C. resulting in a yellow solution. The solution was cooled slightly and 2-iodopropane (120 muL, 1.20 mmol) was added. The reaction was heated at 50 C. for 30 minutes then cooled to room temperature and partitioned between water and ethyl acetate. The organic layer was dried over magnesium sulfate, filtered, and concentrated in vacuo. The residue was purified by flash chromatography, eluding with a gradient of 1:3 ethyl acetate:hexane to all ethyl acetate, to provide 140 mg (69%) of 8-isopropyl-<strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong>, mp 101-102 C. Analysis calculated for C11H13N3OS: C, 56.15; H, 5.57; N, 17.86. Found: C, 56.07; H, 5.59; N, 17.78. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
192 mg (64%) | With NaH; In N-methyl-acetamide; mineral oil; | Example 21 8-Ethyl-<strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> To a suspension of NaH (80 mg of a 60% suspension of NaH in mineral oil) in 10 mL of dimethylformamide was added <strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> (262 mg, 1.35 mmol). The reaction mixture was heated to 50 C. resulting in a brown solution. The solution was cooled slightly and iodoethane (150 muL, 1.88 mmol) was added. The reaction was heated at 50 C. for 10 minutes, then cooled to room temperature and partitioned between cold water and ethyl acetate. The organic layer was dried over magnesium sulfate, filtered, and concentrated in vacuo. The residue was purified by flash chromatography, eluding with 1:1 ethyl acetate:hexane to all ethyl acetate, to provide 192 mg (64%) of 8-ethyl-<strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong>, mp 104-106 C. Analysis calculated for C10H11N3OS: C, 54.28; H, 5.01; N, 18.99. Found: C, 54.28; H. 5.03; N, 19.06. |
192 mg (64%) | With NaH; In N-methyl-acetamide; mineral oil; | Example 21 8-Ethyl-<strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> To a suspension of NaH (80 mg of a 60% suspension of NaH in mineral oil) in 10 mL of dimethylformamide was added <strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> (262 mg, 1.35 mmol). The reaction mixture was heated to 50 C. resulting in a brown solution. The solution was cooled slightly and iodoethane (150 mL, 1.88 mmol) was added. The reaction was heated at 50 C. for 10 minutes, then cooled to room temperature and partitioned between cold water and ethyl acetate. The organic layer was dried over magnesium sulfate, filtered, and concentrated in vacuo. The residue was purified by flash chromatography, eluding with 1:1 ethyl acetate:hexane to all ethyl acetate, to provide 192 mg (64%) of 8-ethyl-<strong>[211244-81-4]2-methanesulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong>, mp 104-106 C. Analysis calculated for C10H11N3OS: C, 54.28; H, 5.01; N, 18.99. Found: C, 54.28; H, 5.03; N, 19.06. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | Example 274 2-Methylsulfanyl-8-propyl-8H-pyrido[2,3-d]pyrimidin-7-one The title compound was prepared from <strong>[211244-81-4]2-methylsulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> (10 g, 51.7 mmol) and iodopropane (5.5 mL, 57 mmol) by using the procedure described in Example 272 (Yield 97%). MS(CI) 236 MH+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
43% | With oxyaziridine; In methanol; dichloromethane; at 20℃; | EXAMPLE 52-MethanesuIfinyl-8H-pyrido[2,3-d]pyrimidin-7-one; To a suspension of <strong>[211244-81-4]2-methylsulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> (WO 9833798 A2, 5.0 g, 25.9 mmol) in CH2Cl2 (100 mL), CHCl3 (50 mL) and MeOH (10 mL, the starting material still did not dissolve) was added the oxaziridine (8.11 g, 31.05 mmol, 1.2 equiv) as a solid. The reaction became homogenous after 3 h and was stirred overnight at RT. The reaction was concentrated and CH2Cl2ZMeOH was added to dissolve the residue. Much of the solid did not dissolve so the mixture was filtered to give 2-Methanesulfinyl-8H-pyrido[2,3-d]pyrimidin-7-one, as an off-white solid (2.31 g, 11.04 mmol, 43%). MS: APCI: M+l: 210.1 (Exact Mass: 209.03). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With sodium methylate; In methanol; at 80℃; for 6h; | The (E) - ethyl-3- (4-amino-2- (methylthio) pyrimidin-5-yl) acrylic acid (14g) (4-a are as defined in formulaThe compound shown) was dissolved in methanol (200ml), was added a solution of sodium methoxide in methanol (21mL), 80 stirredThe reaction 6h. After completion of the reaction the solvent was evaporated, water was added to dissolve with 2N hydrochloric acid and adjusted to pH = 8, producingLarge amount of deposits was filtered to give a white solid (8g, 73%) (4-b as shown in the formula compound): |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In N,N-dimethyl-formamide; | (6) To a suspension of the compound (103 mg) obtained in (5) above in dry dimethylformamide (3 ml) is added iodomethyl (37 mul) in ice bath using microsyringe, followed by addition of potassium carbonate powder (81 mg) in one portion. The reaction mixture is stirred at 0 C for 30 minutes, and then at room temperature for 30 minutes. After addition of water to the reaction mixture, the mixture is extracted with ethyl acetate. The organic layer is washed successively with water and brine, dried over sodium sulfate, and concentrated in vacuo to give a colorless solid. The resultant crude product is suspended in a mixed solvent of ethyl acetate and diisopropyl ether. The solids are collected by filtration, washed with a mixture of diisopropyl ether and hexane to give 2-methylthio-8-N-methyl-7, 8-dihydro-7-oxo-pyrido[2,3-d]pyrimidine (82 mg) as colorless powder. M.p. 192-193 C, MS (m/z) : 208 (MH+). IR (nujol): 1677, 1569, 1459, 1369, 1173 cm-1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With bromine; acetic acid; at 20℃; for 48h; | 2-methylthio-pyrido [2,3-d] pyrimidin-7-one (300mg) (as shown in the formula the compound 4-b) dispersingIn glacial acetic acid (10ml), was added bromine (0.16mL), the reaction mixture was stirred at room temperature 48h. After completion of the reactionDichloromethane was added, filtered, washed with methanol to give a white solid (390mg, 92%) (as defined in formulaThe compound represented by 4-c): |
48% | With N-Bromosuccinimide; In N,N-dimethyl-formamide; at 20℃; | To a solution of <strong>[211244-81-4]2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one</strong> (1.00 g, 5.18 mmol) in anhydrous dimethylformamide (25 mL) was added N-bromosuccinimide (0.99 g, 5.59 mmol) portionwise at room temperature, and the reaction mixture was stirred for 18 h. The mixture was concentrated, and the solid was triturated with hot water (1 x 20 mL), filtered, and washed with isopropanol to give title compound as a pale yellow solid (0.68 g, 2.50 mmol, 48%). ESMS m/z 272 (M+H)+; 1H NuMR (400 MHz, DMSO-J6) delta ppm 12.88 (br. S., 1 H), 8.84 (s, 1 H), 8.47 (s, 1 H), 2.57 (s, 3H). |
48% | With N-Bromosuccinimide; In N,N-dimethyl-formamide; at 20℃; for 18h; | Step 1: Synthesis of 6-bromo-2-(methylthio)pyrido [2,3-d] pyrimidin-7(8H)-one (14).[00387] To a solution of <strong>[211244-81-4]2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one</strong> (8, 1.00 g, 5.2 mmol) in anhydrous dimethylformamide (25 mL) was added N-bromosuccinimide (0.99 g, 5.6 mmol) in small portions at room temperature, and the reaction mixture was stirred for 18 h. The mixture was concentrated, and the solid was triturated with hot water (1 x 20 mL), filtered, and washed with isopropanol to give title compound as a pale yellow solid (0.68 g, 2.5 mmol, 48%). ESMS m/z 272 (M+H)+; 1H NMR (400 MHz, DMSO- 6) delta ppm 12.88 (br. s., 1H), 8.84 (s, 1H), 8.47 (s, 1H), 2.57 (s, 3H). |
48% | With N-Bromosuccinimide; In N,N-dimethyl-formamide; at 20℃; for 18h; | Step 1: Synthesis of 6-bromo-<strong>[211244-81-4]2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one</strong> (2).[00378] To a solution of <strong>[211244-81-4]2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one</strong> (1, 1.00 g, 5.18 mmol) in anhydrous dimethylformamide (25 mL) was added N-bromosuccinimide (0.99 g, 5.59 mmol) portionwise at room temperature, and the reaction mixture was stirred for 18 h. The mixture was concentrated, and the solid was triturated with hot water (1 x 20 mL), filtered, and washed with isopropanol to give title compound as a pale yellow solid (0.68 g, 2.50 mmol, 48%). ESMS m/z 272 (M+H)+; 1H NMR (400 MHz, DMSO- 6) delta ppm 12.88 (br. s., 1H), 8.84 (s, 1H), 8.47 (s, 1H), 2.57 (s, 3H). |
48% | With N-Bromosuccinimide; In N,N-dimethyl-formamide; at 20℃; for 18h; | Step 1: Synthesis of 6-bromo-<strong>[211244-81-4]2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one</strong> (7)·[00372] To a solution of <strong>[211244-81-4]2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one</strong> (6, 1.00 g, 5.2 mmol) in anhydrous dimethylformamide (25 mL) was added A jromosuccinimide (0.99 g, 5.6 mmol) portionwise at room temperature, and the reaction mixture was stirred for 18 h. The mixture was concentrated, and the solid was triturated with hot water (1 x 20 mL), filtered, and washed with isopropanol to give title compound as a pale yellow solid (0.68 g, 2.5 mmol, 48%). ESMS m/z 272 (M+H)+; ¾ NMR (400 MHz, DMSO-<¾ delta ppm 12.88 (br. s, 1H), 8.84 (s, 1H), 8.47 (s, 1H), 2.57 (s, 3H). |
48% | With N-Bromosuccinimide; In N,N-dimethyl-formamide; at 20℃; for 18h; | To a solution of <strong>[211244-81-4]2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one</strong> (1, 1.00 g, 5.18 mmol) in anhydrous dimethylformamide (25 mL) was added N-bromosuccinimide (0.99 g, 5.59 mmol) portionwise at room temperature, and the reaction mixture was stirred for 18 h. The mixture was concentrated, and the solid was triturated with hot water (1 x 20 mL), filtered, and washed with isopropanol to give title compound as a pale yellow solid (0.68 g, 2.50 mmol, 48%). ESMS m/z 272 (M+H)+; ? NMR (400 MHz, DMSO-c/6) delta ppm 12.88 (br. s., 1 H), 8.84 (s, 1 H), 8.47 (s, 1H), 2.57 (s, 3H). |
48% | With N-Bromosuccinimide; In N,N-dimethyl-formamide; at 20℃; for 18h; | [00485] To a solution of <strong>[211244-81-4]2-methylsulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> (1) (1.00 g, 5.18 mmol) in anhydrous dimethylformamide (25 mL) was added N-bromosuccinimide (0.99 g, 5.59 mmol) portionwise at room temperature, and the reaction mixture was stirred for 18 h. The mixture was concentrated, and the solid was triturated with hot water (1 x 20 mL), filtered, and washed with isopropanol to give title compound as a pale yellow solid (0.68 g, 2.50 mmol, 48%). ESMS m/z 272 (M+H)+; 1H NMR (400 MHz, DMSO-d6) delta ppm 12.88 (br. s., 1H), 8.84 (s, 1H), 8.47 (s, 1H), 2.57 (s, 3H). |
5.59 g (79.4%) | With N-Bromosuccinimide; In N,N-dimethyl-formamide; | EXAMPLE 73 6-Bromo-<strong>[211244-81-4]2-methylsulfanyl-8H-pyrido[2,3-d]pyrimidin-7-one</strong> To 5.00 g (25.9 mmol) of 2-methanesulfanyl-8H-pyrido(2,3-d]pyrimidin-7-one (Example 5) in 130 mL of DMF is added 5.00 g (28.1 mmol) of N-bromosuccinimide. The resulting suspension is stirred at room temperature overnight and concentrated. The solid is triturated with hot water, then washed with isopropanol to give 5.59 g (79.4%) of the product as a solid. mp 266-270 C. |
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