Structure of 210366-15-7
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 210366-15-7 |
Formula : | C13H11NO4 |
M.W : | 245.23 |
SMILES Code : | O=C(C1=CC=CC(N1OCC2=CC=CC=C2)=O)O |
MDL No. : | MFCD20270106 |
InChI Key : | CIUDQXNWTGQYIC-UHFFFAOYSA-N |
Pubchem ID : | 15450555 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 18 |
Num. arom. heavy atoms | 12 |
Fraction Csp3 | 0.08 |
Num. rotatable bonds | 4 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 64.59 |
TPSA ? Topological Polar Surface Area: Calculated from |
68.53 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.7 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.67 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.02 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.01 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.33 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.55 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.64 |
Solubility | 0.559 mg/ml ; 0.00228 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.72 |
Solubility | 0.464 mg/ml ; 0.00189 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.15 |
Solubility | 0.174 mg/ml ; 0.00071 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.61 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.54 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With oxalyl dichloride;N,N-dimethyl-formamide; at 40℃; for 4 - 6h; | 1,2-HOPOBn acid chloride; To a suspension of 1 ,2-HOPOBn acid (5 0 g, 20 mmol) in toluene or benzene (50-70 mL), excess of oxalyl chloride (2 0 g) was added with stirring A lot of gas bubbles evolved and the suspension turned to be clear upon the addition of a drop of DMF as catalyst The mixture was then warmed to 40 C (oil bath temperature) for 4-6 hr, and the solvent was moved on a rotovap to leave pale yellow oil The residual solvent and oxallyl chloride were removed in a vacuum line (0 1 mm Hg) when the oil solidified as pale yellow crystalline <n="60"/>solid, raw yield 5.O g (95%). It is generally used directly for next step reaction without further purification.[0222] 1 H NMR(SOOMHZ5 CDCI3)^ 5.32(S, 2H), 6.88(d, l H), 6.94(d, I H), 7.3-7.4(m,4H), 7.49(m, 2H). 1 3C NMR(75 MHz, CDCl3): delta 78.5, 1 12.3, 128.4, 128.6, 129.4, 130.3, 132.7, 136.4, 140.2, 158.1 , 1 58.8. |
95% | With oxalyl dichloride;N,N-dimethyl-formamide; In toluene; at 60℃; for 4 - 6h; | To a suspension of bezyloxyl,2-HOPO carboxylic acid (5.0 g, 20 mmol) in toluene or benzene (50-70 mL), excess oxalyl chloride (5.0 g) was added while stirring. Gas was evolved and the suspension became clear upon the addition of a drop of DMF as a catalyst. The mixture was then warmed to 60 C. (oil bath) for 4-6 h. The solvent was removed by rotary evaporation, leaving a pale brown oil. After co-evaporation twice with toluene (5 mL), the residue was dissolved in dry THF, passed though a flash silica gel plug and eluted with dry THF. The 1,2-HOPOBn acid chloride so obtained after the solvent was removed under reduced pressure, was a thick, pale yellow oil: crude yield 5.0 g (95%). The crude product was used directly for reaction without further purification. 1H NMR (300 MHz, CDCl3): delta5.32 (s, 2H, CH2), 6.88(d, J=7.0 Hz, 1 H), 6.726(d, J=9.0 Hz, 1 H), 7.32-7.51(m, 6 H). 13C NMR (125 MHz, DMSO-d6): delta 78.5, 112.2, 128.5, 128.6, 129.4, 130.3, 132.7, 136.4, 140.1, 158.1, 158.8. |
95% | With oxalyl dichloride; N,N-dimethyl-formamide; at 60℃; for 4 - 6h; | (4) Synthesis of 1 ,2-HOPOBn acid chloride 37A[0371] To a suspension of bezyloxyl,2-HOPO carboxylic acid (5.0 g, 20 mmol) in toluene or benzene (50-70 mL), excess oxalyl chloride (5.0 g) was added while stirring. Gas was evolved and the suspension became clear upon the addition of a drop of DMF as a catalyst. The mixture was then warmed to 60 0C (oil bath) for 4-6 h. The solvent was removed by rotary evaporation, leaving a pale brown oil. After co-evaporation twice with toluene (5 mL), the residue was dissolved in dry THF, passed though a flash silica gel plug and eluted with dry THF. The 1 , 2-HOPOBn acid chloride so obtained after the solvent was removed under reduced pressure, was a thick, pale yellow oil: crude yield 5.0 g (95%). The crude product was used directly for reaction without further purification. 1H NMR (300MHz, CDCl3): 55.32 (s, 2H, CH2), 6.88(d, J = 7.0 Hz, 1 H), 6.726(d, J = 9.0 Hz, 1 H), 7.32-7.51(m, 6 H). 13C NMR (125MHz, DMSO-d6): delta 78.5, 1 12.2, 128.5, 128.6, 129.4, 130.3, 132.7, 136.4, 140.1 , 158.1, 158.8. |
With oxalyl dichloride; N,N-dimethyl-formamide; In dichloromethane; | 0.9 mL of oxalyl chloride (10 mmol) was added dropwise to a solution of 1.79 g of 5 (7.3 mmol) in CH2Cl2 (15 mL). After adding a drop of DMF, the mixture was stirred until the end of HCl release. | |
With oxalyl dichloride; N,N-dimethyl-formamide; In dichloromethane; at 20℃; for 3h; | Oxalyl chloride (1.1 g, 8.7 mmol) was added to a suspension of 7 (1.11 g, 4.52 mmol) in dichloromethane (40 mL), followed by 1 drop of dry DMF. The solution became homogenous within 30 mm, and the reaction was stirred at room temperature for 3 hours total. The solvent was then removed under vacuum overnight. The residue was dissolved into dichloromethane (20 mL) and added dropwise to a solution of 6 (1.13 mmol) dissolved in dichloromethane (20 mL) and 40% aqueous K2C03 (20 mL) at 0 C with vigorous stirring. The reaction was stirred with warming to room temperature overnight. The dichloromethane layer was loaded directly onto a 4 inch tall x 1 inch wide silica gel column. Following a methanol/dichloromethane gradient elution, the desired product was collected using 4% methanol in dichloromethane. The solvent was removed under vacuum to yield the desired product as a hardened glass of 7. Yield: 520 mg, 36% over two steps. ?H NMR (600 MI-Tz, CDC13) oe 9.60 - 8.98 (m, 2H), 8.43 - 7.83 (m, 4H), 7.80 - 7.05 (m, 20H), 7.05 - 5.54 (m, 8H), 5.49 - 4.98 (m, 6H), 4.98 - 4.69 (m, 2H), 4.28 - 3.98 (m, 2H), 3.93 - 2.75 (m, 14H), 2.05 - 1.16 (m, 1OH). HRMS-ESI (m/z, [M+Hj) Calcd for C68H69N,00,5: 1265.4938, Found:1265.4901. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91% | l-Benzyloxy-6-carboxy-2(lJ/)-pyridinone (1,2-HOPOBn acid); l -Hydroxy-6-carboxy-2(l H)-py?dinone (15 5 g, 0 1 mol) and anhydrous potassium carbonate (27 6 g, 0 2 mol) were mixed with benzyl chloride (15 2 g, 0 12 mol) in methanol (250 mL) The mixture was refluxed for 16 h, filtered, and the filtrate evaporated to dryness The residue was dissolved in water (50 ml ) and acidified with 6 N HCl to pH 2 The white precipitate was isolated by filtration, washed with cold water, and dried in vacuum to yield 22 3 g (91 %) of l -Benzyloxy-6-carboxy-2( l //)-py?dinone, mp 176- 177 0C[0220] 1 H NMR(300MHz, CDCI3) delta 5 269(s, 2H), 6 546(dd, J=I 6 Hz, J= 6 7 Hz, I H),6 726(dd, J=I 6Hz, J=9 2 Hz, I H), 7 39-7 51 (m, 6H) 1 3C NMR(75 MHz, DMSO-*) delta 77 9, 106 0, 124 1 , 128 5, 129 1 , 129 6, 133 8, 138 7, 140 5, 157 7, 161 7 Anal Calcd (Found) for C13H1 1NO4 C, 63 66 (63 75), H, 4 53 (4 55), N, 5 71 (5 52) | |
91% | (3) Synthesis of l-Benzyloxy-6-carboxy-2(lH)-pyridinone 36A[0370] 35A (15.5 g, 0.1 mol) and anhydrous potassium carbonate (27.6 g, 0.2 mol) was mixed with benzyl chloride (15.2 g, 0.12 mol) in methanol (250 mL). The mixture was refluxed for 16 h, filtered, and the filtrate was evaporated to dryness. The residue was dissolved in water (50 mL) and acidified with 6 N HCl to pH 2. The resulting white precipitate was isolated by filtration, washed with cold water, and dried in vacuum to yield 22.3 g (91 %) of 36A, mp 176-177 0C. Anal. Calc'd. (Found) for C13H1 1NO4: C, 63.66 (63.75); H, 4.53 (4.55), N, 5.71 (5.52). 1H NMR (500MHz, DMSO-d6): delta 5.26 (s, 2H, CH2), 6.54 (dd, J = 6.7, 1.1 Hz, 1 H), 6.73 (dd, J = 9.2, 1.6Hz, 1 H), 7.39-7.51 (m, 6 H). 13C NMR (125MHz, DMSO-dbeta): delta 77.9, 106.0. 124.1. 128.5, 129.1 , 129.6, 133.8, 138.7, 140.4, 157.6, 161.7. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91% | 35A (15.5 g, 0.1 mol) and anhydrous potassium carbonate (27.6 g, 0.2 mol) was mixed with benzyl chloride (15.2 g, 0.12 mol) in methanol (250 mL). The mixture was refluxed for 16 h, filtered, and the filtrate was evaporated to dryness. The residue was dissolved in water (50 mL) and acidified with 6 N HCl to pH 2. The resulting white precipitate was isolated by filtration, washed with cold water, and dried in vacuum to yield 22.3 g (91%) of 36A, mp 176-177 C. Anal. Calc'd. (Found) for C13H11NO4: C, 63.66 (63.75); H, 4.53 (4.55), N, 5.71 (5.52). 1H NMR (500 MHz, DMSO-d6): delta 5.26 (s, 2H, CH2), 6.54 (dd, J=6.7, 1.1 Hz, 1 H), 6.73 (dd, J=9.2, 1.6Hz, 1 H), 7.39-7.51 (m, 6 H). 13C NMR (125 MHz, DMSO-d6): delta 77.9, 106.0, 124.1, 128.5, 129.1, 129.6, 133.8, 138.7, 140.4, 157.6, 161.7. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
67% | With dmap; O-(benzotriazol-1-yl)-N,N,N',N'-tetramethyluronium tetrafluoroborate; N-ethyl-N,N-diisopropylamine; In dichloromethane; at 20℃; for 30h; | 3,4,3-LI-IAMBn (7) (362 mg, 491 mumol), 1,2-HOPOBn (9) [16](289 mg, 1.18 mmol), DMAP (5.4 mg, 44 mumol), TBTU (379 mg,1.18 mmol) were suspended in 20 mL DCM. DIPEA (254 mg,1.96 mmol, 343 muL, rho 0.74 g/cm3) was added to start the reaction andit was stirred at roomtemperature for 30 h until TLC showed no furtherconversion. After the removal of the solvent under reduced pressure,the crude product was subjected to column chromatography (SiO2,gradient from 0% to 10% MeOH in DCM) to afford a white solid. Yield:394 mg (67%). ESI MS, LC-ESI MS data as well as TLC experiments indicatedpartial cleavage of benzyl protecting groups during the purificationstep. Thus the crude (8) was used directly in the next step. p-ESIHRMS (MeOH): 1191.5160 (calc. 1191.5186, [C68H71N8O12]+);1213.4967 (calc. 1213.5005, [C68H70N8NaO12]+); 1229.4748 (calc.1229.4745, [C68H70N8KO12]+). |