Structure of 193537-14-3
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CAS No. : | 193537-14-3 |
Formula : | C15H22N2O4S |
M.W : | 326.41 |
SMILES Code : | CCOC(=O)C1=C(N)SC2=C1CCN(C2)C(=O)OC(C)(C)C |
MDL No. : | MFCD05664039 |
InChI Key : | XSXVOVXVHBSSSN-UHFFFAOYSA-N |
Pubchem ID : | 2794740 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 22 |
Num. arom. heavy atoms | 5 |
Fraction Csp3 | 0.6 |
Num. rotatable bonds | 6 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 89.99 |
TPSA ? Topological Polar Surface Area: Calculated from |
110.1 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
3.4 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.78 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.28 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.59 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.74 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.56 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.39 |
Solubility | 0.134 mg/ml ; 0.00041 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-4.75 |
Solubility | 0.00583 mg/ml ; 0.0000179 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.83 |
Solubility | 0.482 mg/ml ; 0.00148 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
Yes |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
Yes |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.32 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
1.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.42 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88% | With sulfur; triethylamine; In ethanol; for 16.0h; | 2-Amino-4,7-dihydro-5H-thieno[2,3-c]pyridine-3,6-dicarboxylic acid 6-tert-butyl ester 3-ethyl ester (step a). To a mixture of 4-oxo-piperidine-1-carboxylic acid tert-butyl ester (12.9 g), ethyl cyanoacetate (7.345 g), and sulphur (2.080 g) in absolute ethanol (50 mL) was added triethylamine (9 mL). After stirring for 16 h, the precipitate was collected by filtration and washed with ethanol to give the title compound (18.7 g, 88%). 1H NMR (300 MHz, CDCl3): delta 6.02 (s, 2H), 4.31 (s, 2H), 4.23 (q, 2H, J=7.2 Hz), 3.58 (t, 2H, J=6.0 Hz), 2.72-2.80 (brs, 2H), 1.44 (s, 9H), 1.30 (t, 3H, J=7.2 Hz). LC-MS (ESI) m/z 327.0 (M+H). |
87% | With sulfur; triethylamine; In ethanol; | General procedure: To a mixture of cyclohexanone (1) (9.80 g, 100 mmol), ethylcyanoacetate (11.32 g, 200.0 mmol), and sulfur (3.20 g, 100.0 mmol) inabsolute ethanol (200 ml) was added triethylamine (20 ml) and refluxedfor 12 h; the reaction mixture was concentrated and the residue waspartitioned between water and ethyl acetate. The organic layer wasseparated, and concentrated, and the crude product was recrystallizedwith ethanol (150 ml), to give 2. Yield 76%, light yellow crystal. |
86% | With morpholine; sulfur; In ethanol; at 20℃; | tert-Butyl 4-oxopiperidine-l-carboxylate (101 g, 505 mmol) was dissolved in ethanol (806 mL), and ethyl cyanoacetate (57.2 g, 505 mmol) and sulfur (17.0 g, 531 mmol) were added. The mixture was stirred for a couple of minutes, and then morpholine (44.0 g, 505 mmol) was added. The reaction was stirred at rt overnight. The precipitate was collected by suction filtration and washed with ethanol to yield 142 g (86%) of the title compound.1H-NMR (400 MHz, DMSOd6): delta = 1.25 (t, 3H), 1.41 (s, 9H), 2.63-2.68 (m, 2H), 3.51 (t, 2H), 4.15 (q, 2H), 4.24 (br. s, 2H), 7.32 (s, 2H).LC/MS (method 5): R, = 2.40 min; MS (ESIpos): m/z = 327 [M+H]+. |
83% | With sulfur; diethylamine; In ethanol; at 20℃; for 16.0h; | To a 1-Boc-4-piperidone (25.0 g, 123 mmol) in ethanol (100 mL) solution were added ethyl cyanoacetate (14.2 g, 123 mmol, 1 equiv), diethylamine (12.72 mL, 123 mmol, 1 equiv), and sulfur (4.14 g, 129 mmol, 1.05 equiv). The reaction was stirred at room temperature for 16 h then filtered and washed with ethanol (25 mL) to obtain a white solid (33.11 g, 102 mmol, 83%). 1H NMR (DMSO-d6) delta 7.31 (broad s, 2H), 4.22 (s, 2H), 4.13 (q, 2H), 3.49 (t, 2H), 2.63 (t, 2H), 1.39 (s, 9H), 1.23 (t, 3H); LCMS RT=3.49 min, [M+H]+=326.7. |
12% | With morpholine; sulfur; In ethanol; at 20 - 40℃; | General procedure: A mixture of the ketone (1 eq.), cyanoacetate (1 eq.), and elemental sulphur (1eq.) in ethanol were combined and heated at 40-70 C. Morpholine or diethylamne (1 eq.) was added dropwise. The reaction was stirred at 40-70 C for 1-4 hours, and then stirred at room temperature overnight. The resulting precipitate was typically collected by filtration and recrystallised from ethanol or toluene. |
With morpholine; sulfur; In ethanol; at 50℃; for 3.0h; | Example 4A 2-Amino-4,7-dihydro-5H-thieno[2,3-c]pyridine-3,6-dicarboxylic acid 6-tert-butyl ester 3-ethyl ester To a solution of t-butyl-4-oxo-1-piperidinecarboxylate (25.1 g, 0.13 mol), ethyl cyanoacetate (14.8 mL, 0.14 mol) and sulfur (4.4 g, 0.14 mol) in 200 mL ethanol was added morpholine (30.8 mL, 0.35 mol). The mixture was warmed to 50 C. and stirred for 3 hours. The reaction mixture was then cooled to ambient temperature, diluted with diethyl ether and filtered. The residue was washed with H2O and diethyl ether. The filtrate was concentrated under reduced pressure and purified via column chromatography (SiO2, 70% hexanes:ethyl acetate). The resulting material was combined with the filtration residue to afford the title compound. MS (DCI/NH3) m/z 327 (M+H)+. | |
With sulfur; triethylamine; In ethanol; at 20℃; for 16.0h; | The N-(tert-Butoxycarbonyl)-4-piperidone, NCCH2CO2Et and Et3N was mixed at roomtemperature then stirring for 16 h, and then heated to 120 C for 16 h in DMF with the formamidineacetate. Then, the intermediate was reacted with POCl3 and DIPEA in toluene to obtain thecompound 7 (yield 89%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
63% | With sulfur; diethylamine; In ethanol; at 70℃; for 3.0h; | General procedure: [00139] Ethyl cyanoacetate (0.53 g, 4.71 mmol), sulfur (0.18 g, 5.68 mmol), and ketone (1.0 g, 4.28 mmol) were suspended in EtOH (10.0 mL). Diethylamine (0.62 g, 8.57 mmol) was added and the mixture was heated to 70 C for 3 h. After the reaction was complete, EtOH was evaporated under reduced pressure resulting in a brown solid, which was dissolved in CH2CI2. The CH2CI2 layer was washed with sat. NH4CI (20.0 mL), deionized H20 (20.0 mL), and sat. NaCl (20.0 mL). After drying with anhydrous NaS04 and filtration, the solvent was evaporated and the crude product was purified by crystallization from cold MeOH to obtain product; [00155] Yield: 63% (4.2 g); silica gel TLC R= 0.49 (40% ethyl acetate in hexanes); ?H-NMR (600 MHz, CDC13): 5 4.36 (s, 2H, H-9), 4.27 (q, 2H, fl6,17 6Hz, H-16), 3.62 (t, 2H, J2,3 6Hz, H-2), 2.81 (t, 2H, J3,2 6Hz, H-3), 1.49 (s, 9H, H-13, 20, 21), 1.35 (t, 3H, f16,17 6Hz, H-17); ?3C-NMR (150 MHz, CDC13): 5166.54 (C-2), 163.44 (C-il), 153.88 (C-13), 130.80 (C-4, 9), 102.61 (C-3), 79.08 (C-iS), 42.48 (C-8),41.45 (C-6), 28.07 (C-20, 19, 16), 14.11 (C-5); mass spectrum (ESI), m/z = 349.1 (M+23) C15H22N204S requires 349.11 (M+23) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | In N,N-dimethyl-formamide; at 100℃; for 16.0h; | 4-Oxo-3,5,6,8-tetrahydro-4H-9-thia-1,3,7-triaza-fluorene-7-carboxylic acid tert-butyl ester (step b). A mixture of 2-amino-4,7-dihydro-5H-thieno[2,3-c]pyridine-3,6-dicarboxylic acid 6-tert-butyl ester 3-ethyl ester (18.5 g) and formamidine acetate (8.85 g) in DMF (100 mL) were heated at 100 C. for 16 h. The reaction mixture was cooled and concentrated. The residues was partitioned between water and ethyl acetate. The organic layer was washed with water 3 times and concentrated to give the title compound (15.8 g, 90%). 1H NMR (400 MHz, CDCl3): delta 7.88 (s, 1H), 4.56-4.62 (brs, 2H), 3.62-3.70 (brs, 2H), 3.02-3.08 (brs, 2H), 1.42 (s, 9H). LC-MS (ESI) m/z 308.1 (M+H). |
90.6% | In N,N-dimethyl-formamide; at 100℃; | To a <strong>[193537-14-3]2-Amino-4,7-dihydro-5H-thieno[2,3-c]pyridine-3,6-dicarboxylic acid 6-tert-butyl ester 3-ethyl ester</strong> (5.0 g, 15 mmol) in DMF (50 mL) solution was added formamidine acetate (2.39 g, 23 mmol, 1.5 equiv). The mixture was heated at 100 C. in an oil bath for overnight. The reaction mixture was cooled to rt and then concentrated in vacuo. Ethyl acetate (50 mL) was added to the reaction solid mixture and stirred at rt for 2 h. The mixture was then filtered, rinsed with ethyl acetate (25 mL). The solid was placed in a vacuum oven and dried for overnight to yield a white solid (4.17 g, 90.6%). 1H NMR (CD3OD-d4) delta 8.05 (s, 1H), 4.57 (s, 2H), 3.61 (t, 2H), 2.92 (t, 2H), 1.42 (s, 9H); LCMS RT=2.78 min, [M+H]+=308.0. |
88% | In N,N-dimethyl-formamide; at 100℃; | To a solution of 6-tert-butyl 3-ethyl 2-amino-4,7-dihydrothieno[2,3-c]pyridine-3,6(5H)-dicarboxy- late from Example 9A (1.23 kg, 3.77 mol) in DMF (10.3 L) was added formamidine acetate (588 g, 5.65 mol). The mixture was heated to 1000C overnight. The solvent was removed in vacuo. The residue was stirred with ethyl acetate (3 L) for 2 h. The precipitate was collected by suction filtration and rinsed with ethyl acetate. The solid was dried to yield 1.02 kg (88%) of the title compound.1H-NMR (400 MHz, DMSOd6): delta = 1.43 (s, 9H), 2.91-2.96 (m, 2H), 3.62 (t, 2H), 4.58 (s, 2H), 8.05 (s, IH), 12.38 (br. s, IH).LC/MS (method 4): R, = 2.03 min; MS (ESIpos): m/z = 308 [M+H]+. |
In N,N-dimethyl-formamide; at 120℃; for 16.0h; | The N-(tert-Butoxycarbonyl)-4-piperidone, NCCH2CO2Et and Et3N was mixed at roomtemperature then stirring for 16 h, and then heated to 120 C for 16 h in DMF with the formamidineacetate. Then, the intermediate was reacted with POCl3 and DIPEA in toluene to obtain thecompound 7 (yield 89%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
5% | With N-ethyl-N,N-diisopropylamine; In dichloromethane; for 48.0h; | Phenylacetyl chloride (81 muL, 0.614 mmol) was added dropwise to a solution containing 9g (100 mg, 0.307 mmol) and DIPEA (59 muL, 0.34 mmol) in CH2Cl2 (2 mL), and the reaction was stirred for 2 days. The reaction solution was washed with 0.1M HCl and 1M NaOH. The organic layer was concentrated under reduced pressure and the residue was chromatographed on silica gel (hexane/Et2O 4:1) and then recrystallised from hexane (6.1 mg, 5%). 1H NMR (300 MHz, CDCl3) delta 7.45 (m, 5H, C6H5), 4.54 (s, 2H, 7-CH2), 4.29 (q, J = 7.1 Hz, 2H, CH2CH3), 3.87 (s, 2H, CH2Ph), 3.68 (m, 2H, 5-CH2), 2.90 (m, 2H, 4-CH2), 1.53 (s, 9H, Boc), 1.37 (t, J = 7.2 Hz, 3H, CH2CH3). ESI-MS m/z 445.3 [M + H]+. |
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