Structure of 143766-89-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 143766-89-6 |
Formula : | C11H19NO6 |
M.W : | 261.27 |
SMILES Code : | O=C(N(CCC(O)=O)CCC(O)=O)OC(C)(C)C |
MDL No. : | MFCD11226793 |
InChI Key : | NIFJJASPEGEHDS-UHFFFAOYSA-N |
Pubchem ID : | 15666718 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 18 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.73 |
Num. rotatable bonds | 9 |
Num. H-bond acceptors | 6.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 63.14 |
TPSA ? Topological Polar Surface Area: Calculated from |
104.14 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.7 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.11 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.17 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.52 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.13 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.67 |
Log S (ESOL):? ESOL: Topological method implemented from |
-0.94 |
Solubility | 30.3 mg/ml ; 0.116 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.85 |
Solubility | 3.67 mg/ml ; 0.0141 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.49 |
Solubility | 85.3 mg/ml ; 0.327 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.82 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.4 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With sodium hydroxide; In tetrahydrofuran; water; at 4℃; for 3.0h; | To a solution of 3, 3'-azanediyldipropanoic acid (10.00 g, 62.08 mmol) in 1.0 M NaOH (300 ml) at 4 was added di-tert-butyl dicarbonate (22.10 g, 101.3 mmol) in 200 ml THF in 1 h. After addition, the mixture was kept to stirring for 2 h at 4 . The mixture was carefully acidified to pH 4 with 0.2 M H 3PO 4, concentrated in vacuo, extracted with CH2Cl2, dried over Na2SO4, evaporated and purified with flash SiO2 chromatography eluted with AcOH/MeOH/CH 2Cl 2 (0.01: 1: 5) to afford 3, 3'- ( (tert-butoxycarbonyl) azanediyl) dipropanoic acid (13.62 g, 84%yield) . ESI MS m/z C 11H 19NO 6 [M+H] +, cacld. 262.27, found 262.40. |
84% | With sodium hydroxide; In tetrahydrofuran; water; at 4℃; for 3.0h; | To a solution of 3, 3'-azanediyldipropanoic acid (10.00 g, 62.08 mmol) in 1.0 M NaOH (300 ml) at 4 was added di-tert-butyl dicarbonate (22.10 g, 101.3 mmol) in 200 ml THF in 1 h. After addition, the mixture was kept to stirring for 2 h at 4 . The mixture was carefully acidified to pH 4 with 0.2 M H 3PO 4, concentrated in vacuo, extracted with CH2Cl2, dried over Na2SO4, evaporated and purified with flash SiO2 chromatography eluted with AcOH/MeOH/CH 2Cl 2 (0.01: 1: 5) to afford 3, 3'- ( (tert-butoxycarbonyl) azanediyl) dipropanoic acid (13.62 g, 84%yield) . ESI MS m/z C 11H 19NO 6 [M+H] +, cacld. 262.27, found 262.40. [0361] To a solution of 3, 3'- ( (tert-butoxycarbonyl) azanediyl) dipropanoic acid (8.0 g, 30.6 mmol) in CH 2Cl 2 (500 ml) at 0 was added phosphorus pentoxide (8.70 g, 61.30 mmol) . The mixture was stirred at 0 for 2 h and then r.t. for 1 h, filtered through short SiO 2 column, and rinsed the column with EtOAc/CH 2Cl 2 (1: 6) . The filtrate was concentrated and triturated with EtOAc/hexane to afford the title compound (5.64 g, 74%yield) . ESI MS m/z C 11H 17NO 5 [M+H] +, cacld. 244.11, found 244.30. |
84% | With sodium hydroxide; In tetrahydrofuran; water; at 4℃; for 3.0h; | To a solution of 3,3'-iminodipropionic acid (10.00g, 62.08mmol) in 1.0N NaOH (300mL) at 4 C, di-tert-butyl dicarbonate (22.10g, 101.3mmol) in tetrahydrofuran ( 200 mL) solution.After 1 hour of addition, the mixture was stirred at 4 C for 2 hours. The mixture was carefully acidified to pH 4 with 0.2M H3PO4,Concentrated under reduced pressure,Extracted with dichloromethane,Dried over sodium sulfate, filtered,After concentration, it was purified by silica gel column.Eluted with AcOH / MeOH / CH2Cl2 (0.01: 1: 5),3,3 '-((tert-butoxycarbonyl) imino) dipropionic acid was obtained (13.62 g, yield 84%). |
84% | With sodium hydroxide; In tetrahydrofuran; at 4℃; for 3.0h; | At 4C, to 3,3'-iminodipropionic acid (10.00g, 62.08mmol) in 1.0N NaOH (300ml) solution was added di-tert-butyl dicarbonate (22.10g, 101.3mmol) in 200ml THF solution. After 1 hour of addition, the mixture was stirred at 4 C for 2 hours. The mixture was carefully acidified to pH-4 with 0.2M H3PO4, concentrated in vacuo, extracted with methane, dried over sodium sulfate, concentrated and purified with a silica gel column.It was eluted with AcOH/MeOH/CH2Cl2 (0.01:1:5) to obtain 3,3'-((tert-butoxycarbonyl)imino)dipropionic acid (13.62g, yield 84%). |
79% | With sodium hydrogencarbonate; In methanol; at 20℃; for 72.0h; | A mixture of 3,3'-iminodipropionic acid (2.79 g, 17.3 mmol), di-tert-butyl dicarbonate (3.78 g, 17.3 mmol), sodium bicarbonate (2.91 g, 34.6 mmol) in methanol (80 mL) was stirred at room temperature for 3 days. The solvent was removed under reduced pressure. Water (60 mL) was added to the residue, and the resulting solution was washed with diethyl ether (100 mL). The aqueous solution was adjusted to pH 3 with 2 N HCl. The acidic solution was extracted with ethyl acetate (100 mL × 2). The combined organic phases were dried with anhydrous magnesium sulfate, and the solvent was removed under reduced pressure to yield 4 as colorless oil (3.57 g, 79%). 1H NMR (400 MHz, CDCl3) δ 3.53 (t, J = 6.3 Hz, 4H), 2.73 - 2.46 (m, 4H), 1.45 (s, 9H). MS (ESI) calculated for C11H11NO6 261.1, found [M + Na]+ 284.4. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; In dichloromethane; at 20℃; for 20.0h; | General procedure: A mixture of 3 (1.87 g, 8 mmol) and 2,3,5,6-tetrafluorophenol (3.32 g, 20 mmol) in dichloromethane (40 mL) was added N,N’-dicyclohexylcarbodiimide (3.30 g, 16 mmol). The resulting solution was stirred at room temperature for 20 h, and filtered. The filtrate was washed with aqueous NaOH solution (1 N, 100 mL), dried over anhydrous magnesium sulfate, and concentrated under reduced pressure. The residue was purified by flash column chromatography with 15:85 diethyl ether/hexane to yield 5 as white solid (2.42 g, 57%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | With phosphorus pentoxide; In dichloromethane; at 0 - 20℃; for 3.0h; | To a solution of 3, 3'- ( (tert-butoxycarbonyl) azanediyl) dipropanoic acid (8.0 g, 30.6 mmol) in CH 2Cl 2 (500 ml) at 0 was added phosphorus pentoxide (8.70 g, 61.30 mmol) . The mixture was stirred at 0 for 2 h and then r.t. for 1 h, filtered through short SiO 2 column, and rinsed the column with EtOAc/CH 2Cl 2 (1: 6) . The filtrate was concentrated and triturated with EtOAc/hexane to afford the title compound (5.64 g, 74%yield) . ESI MS m/z C 11H 17NO 5 [M+H] +, cacld. 244.11, found 244.30. |
74% | With phosphorus pentoxide; In dichloromethane; at 0 - 20℃; for 3.0h; | To a solution of 3, 3'-azanediyldipropanoic acid (10.00 g, 62.08 mmol) in 1.0 M NaOH (300 ml) at 4 was added di-tert-butyl dicarbonate (22.10 g, 101.3 mmol) in 200 ml THF in 1 h. After addition, the mixture was kept to stirring for 2 h at 4 . The mixture was carefully acidified to pH 4 with 0.2 M H 3PO 4, concentrated in vacuo, extracted with CH2Cl2, dried over Na2SO4, evaporated and purified with flash SiO2 chromatography eluted with AcOH/MeOH/CH 2Cl 2 (0.01: 1: 5) to afford 3, 3'- ( (tert-butoxycarbonyl) azanediyl) dipropanoic acid (13.62 g, 84%yield) . ESI MS m/z C 11H 19NO 6 [M+H] +, cacld. 262.27, found 262.40. [0361] To a solution of 3, 3'- ( (tert-butoxycarbonyl) azanediyl) dipropanoic acid (8.0 g, 30.6 mmol) in CH 2Cl 2 (500 ml) at 0 was added phosphorus pentoxide (8.70 g, 61.30 mmol) . The mixture was stirred at 0 for 2 h and then r.t. for 1 h, filtered through short SiO 2 column, and rinsed the column with EtOAc/CH 2Cl 2 (1: 6) . The filtrate was concentrated and triturated with EtOAc/hexane to afford the title compound (5.64 g, 74%yield) . ESI MS m/z C 11H 17NO 5 [M+H] +, cacld. 244.11, found 244.30. |
74% | With phosphorus pentoxide; In dichloromethane; at 0℃; for 2.0h; | At 0C, add 3,3’-((tert-butoxycarbonyl)imino)dipropionic acid (8.0g, 30.6mmol), Add phosphorus pentoxide (8.70g, 61.30mmol) to the dichloromethane (500ml) solution. The mixture was stirred at 0 C for 2 hours, then at room temperature for 1 hour, filtered through a short silica gel column and eluted with ethyl acetate/dichloromethane (1:6). The filtrate was concentrated and slurried with ethyl acetate/n-hexane to obtain the target compound (5.64 g, 74% yield). |
5.64 g | With phosphorus pentoxide; In dichloromethane; at 0℃; for 2.0h; | At 0 C,To a solution of 3,3 '-((tert-butoxycarbonyl) imino) dipropionic acid (8.0 g, 30.6 mmol) in dichloromethane (500 mL) was added phosphorus pentoxide (8.70 g, 61.30 mmol).The mixture was stirred at 0 C for 2 hours,Then stirred at room temperature for 1 hour,Filtration through a short silica gel column,And eluted with ethyl acetate / dichloromethane (1: 6).The filtrate was concentrated and slurried with ethyl acetate / n-hexane.The title compound was obtained (5.64 g, 74% yield). |