Structure of 1408334-75-7
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1408334-75-7 |
Formula : | C5H7IN2O |
M.W : | 238.03 |
SMILES Code : | IC1=CN(CCO)N=C1 |
MDL No. : | MFCD16619492 |
InChI Key : | BQTYRYUORKTCJO-UHFFFAOYSA-N |
Pubchem ID : | 57886737 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P280-P305+P351+P338-P310 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 5 |
Fraction Csp3 | 0.4 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 42.17 |
TPSA ? Topological Polar Surface Area: Calculated from |
38.05 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.52 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.13 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.48 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.46 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.03 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.73 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.68 |
Solubility | 5.01 mg/ml ; 0.021 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-0.49 |
Solubility | 77.9 mg/ml ; 0.327 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.6 |
Solubility | 5.97 mg/ml ; 0.0251 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.66 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.12 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With triethylamine; In dichloromethane; at 0 - 20℃; for 18h; | Preparation 58: 2-(4-iodo-1 H-pyrazol-1 -yl)ethyl 4-methylbenzenesulfonate 2-(4-lodo-1 H-pyrazol-1 -yl)ethanol (Preparation 57, 535 mg, 2.248 mmol) in DCM (1 1 ml_) was treated with triethylamine (1 .55 ml_, 1 1 .14 mmol) at 0C. Tosyl chloride (857 mg, 4.50 mmol) was added at 0C and the mixture was allowed to warm to room temperature for 18 hours. The organic layer was washed with water, HCI 1 M and water (twice). The organic layers were dried, concentrated and purified by silica gel column chromatography eluting with 0 to 30% EtOAc in cyclohexane to give the title compound (817 mg, 93%). 1 H NMR (500 MHz, CDCI3): delta 7.64 (d, J = 8.4 Hz, 2H), 7.40 (s, 1 H), 7.39 (s, 1 H), 7.32 (d, J = 8.4 Hz, 2H), 4.38 - 4.34 (m, 4H), 2.47 (s, 3H). LCMS (ESI) Rt = 2.26 minutes MS m/z 393 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With 1H-imidazole; In N,N-dimethyl-formamide; at 20℃; for 18h; | 1-(2-(tert-butyldiphenylsilyloxy)ethyl)-4-iodo-1H-pyrazole A solution of 2-(4-iodo-1 H-pyrazol-1 -yl)ethanol (Preparation 57) (1 .01 g, 4.24 mmol) in DMF (21 ml_) was treated with imidazole (410 mg, 6.03 mmol) followed by tert- butylchlorodiphenylsilane (1 .321 ml_, 5.09 mmol) and the mixture was stirred to room temperature for 18 hours. The mixture was diluted with EtOAc and quenched with brine. The aqueous layer was extracted with EtOAc three times. The combined organic layers were washed with water and brine, dried and concentrated. The residue was purified by silica gel column chromatography eluting with 0 to 10% EtOAc in cyclohexane to give the title compound (2.25 g, quant). 1 H NMR (500 MHz, CDCI3): delta 7.56 (s, 1 H), 7.54 - 7.50 (m, 5H), 7.47 - 7.35 (m, 6H), 4.26 (t, J = 5.2 Hz, 2H), 3.96 - 3.91 (m, 2H), 1 .03 (s, 9H). LCMS (ESI) Rt = 1 .98 minutes MS m/z 498 [M+Na]+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
64% | Preparation 57: 2-(4-iodo-1 H-pyrazol-1 -yl)ethanol A solution of 4-iodo-1 H-pyrazole (4.50 g, 23.20 mmol) in DMF (45 mL) was treated with sodium hydride (60% w/w, 1 .42 g, 35.5 mmol) at 0C and stirred at room temperature. After 1 hour the resulting mixture was treated with 2-bromoethanol (2.5 mL, 35.2 mmol) at 0C. The resulting mixture was heated to 65 C for 3 days. The reaction quenched with brine/EtOAc and the aqueous layer extracted with EtOAc. The combined organic layers were washed with water, brine, dried and concentrated. The residue was purified by silica gel column chromatography eluting with 0 to 50% EtOAc in cyclohexane to give the title compound (3.55 g, 64%). 1 H NMR (500 MHz, CDCI3): delta 7.55 (s, 1 H), 7.52 (s, 1 H), 4.32 - 4.22 (m, 2H), 4.04 - 3.95 (m, 2H), 2.79 - 2.68 (br m, 1 H). LCMS (ESI) Rt = 1 .50 minutes MS m/z 238 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
53% | In N,N-dimethyl-formamide; at 125℃; for 24h; | a. 2-(4-Iodo-pyrazol-1-yl)-ethanol (Intermediate Aa) A solution of 4-iodopyrazole (14.3 g, 73.9 mmol) and ethylene carbonate (6.83g, 77.6 mmol) in DMF (50 mL) was stirred at 125 C. for 24 h. The cooled solution was concentrated under vacuum to leave a brown oil. The residue was purified by FCC using 30-70% EtOAc in DCM to give the title compound (9.36 g, 53%). LCMS (Method 3): Rt 2.24 min, m/z 239 [MH+]. |
53% | In N,N-dimethyl-formamide; at 125℃; for 24h; | A solution of 4-iodopyrazole (14.3 g, 73.9 mmol) and ethylene carbonate (6.83g, 77.6 mmol) in DMF (50 mL) was stirred at 125 C for 24 h. The cooled solution was concentrated under vacuum to leave a brown oil. The residue was purified by FCC, using 30-70% EtOAc in DCM, to give the title compound (9.36 g, 53%). LCMS (Method 3): Rt 2.24 min, m/z 239 [MH+]. |
53% | In N,N-dimethyl-formamide; at 125℃; for 24h; | A solution of 4-iodopyrazole (14.3 g, 73.9 mmol) and ethylene carbonate (6.83g, 77.6 mmol) in DMF (50 mL) was stirred at 125C for 24 h. The cooled solution was concentrated under vacuum to leave a brown oil. The residue was purified by FCC using 30-70% EtOAc in DCM to give the title compound (9.36 g, 53%). LCMS (Method 3): Rt 2.24 min, m/z 239 [MH+]. |
53% | In N,N-dimethyl-formamide; at 125℃; for 24h; | A solution of 4-iodopyrazole (14.3 g, 73.9 mmol) and ethylenecarbonate (6.83g, 77.6 mmol) in DMF (50 mL) was stirred at 125 C for 24 h.The cooled solution was concentrated under vacuum to leave a brown oil. Theresidue was purified by FCC, using 30-70% EtOAc in DCM, to give the titlecompound (9.36 g, 53%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61% | With copper(l) iodide; potassium carbonate; (1S,2S)-N,N'-dimethyl-1,2-diaminocyclohexane; In 5,5-dimethyl-1,3-cyclohexadiene; for 3h;Inert atmosphere; Reflux; | b. 2-(5-Amino-3-tert-butyl-[1,4']bipyrazolyl-1'-yl)-ethanol (Intermediate Gb) A solution of Intermediate Ga (9.36 g, 39.3 mmol) in xylene (40 mL) was purged with argon for 30 min. In a separate flask, a mixture of 3-tert-butyl-1H-pyrazole-5-amine (5.75 g, 41.3 mmol), copper iodide (375 mg, 1.97 mmol), trans-N,N-dimethylcyclohexane-1,2-diamine (1.12 g, 7.87 mmol) and potassium carbonate (11.4 g, 82.6 mmol) was de-gassed and purged with argon three times. The xylene solution was then added, via cannula to the flask and the resultant brown solution was heated at reflux for 3 h. The cooled solution was diluted with EtOAc (40 mL) and washed with saturated aqueous ammonia solution/water (1:1, 40 mL). The aqueous layer was extracted with EtOAc (40 mL) and the combined organics were washed with water (40 mL) and brine (40 mL), dried (Na2SO4), filtered and concentrated in vacuo to afford a solid. This was purified by FCC, using 4-7.5% MeOH in DCM to afford the title compound (6.01 g, 61%). LCMS (Method 1): Rt 1.84 min, m/z 250 [MH+]. |
61% | With trans-N,N'-dimethyl-1,2-cyclohexyldiamine; copper(l) iodide; potassium carbonate; In 5,5-dimethyl-1,3-cyclohexadiene; for 3h;Inert atmosphere; Reflux; | A solution of Intermediate 6a (9.36 g, 39.3 mmol) in xylene (40 mL) was purged with Argon for 30 min. In a separate flask, a mixture of 3-tert- butyl-lH-pyrazole-5-amine (5.75 g, 41.3 mmol), copper iodide (375 mg, 1.97 mmol), trans-N,N-dimethylcyclohexane- l ,2-diamine (1.12 g, 7.87 mmol) and potassium carbonate (1 1.4 g, 82.6 mmol) was de-gassed and purged with Argon three times. The xylene solution was then added, via cannula to the flask and the resultant brown solution was heated at reflux for 3 h. The cooled solution was diluted with EtOAc (40 mL) and washed with saturated aqueous ammonia solution/water (1 : 1 , 40 mL). The aqueous layer was extracted with EtOAc (40 mL) and the combined organics were washed with water (40 mL) and brine (40 mL), dried (Na2SO4), filtered and concentrated in vacuo to afford a solid. This was purified by FCC, using 4-7.5% MeOH in DCM, to afford the title compound (6.01 g, 61 %). LCMS (Method 3): Rt 1.84 min, m/z 250 [MH+]. |
61% | With copper(l) iodide; potassium carbonate; (1S,2S)-N,N'-dimethyl-1,2-diaminocyclohexane; In 5,5-dimethyl-1,3-cyclohexadiene; for 3h;Inert atmosphere; Reflux; | A solution of Intermediate Ga (9.36 g, 39.3 mmol) in xylene (40 mL) was purged with argon for 30 min. In a separate flask, a mixture of 3-tert-butyl-lH- pyrazole-5-amine (5.75 g, 41.3 mmol), copper iodide (375 mg, 1.97 mmol), trans- N,N-dimethylcyclohexane-l ,2-diamine (1.12 g, 7.87 mmol) and potassium carbonate (1 1.4 g, 82.6 mmol) was de-gassed and purged with argon three times. The xylene solution was then added, via cannula to the flask and the resultant brown solution was heated at reflux for 3 h. The cooled solution was diluted with EtOAc (40 mL) and washed with saturated aqueous ammonia solution/water (1 : 1 , 40 mL). The aqueous layer was extracted with EtOAc (40 mL) and the combined organics were washed with water (40 mL) and brine (40 mL), dried (Na2S04), filtered and concentrated in vacuo to afford a solid. This was purified by FCC, using 4-7.5% MeOH in DCM to afford the title compound (6.01 g, 61 %). LCMS (Method 1): Rt 1.84 min, m/z 250 [MH+]. |
61% | With copper(l) iodide; potassium carbonate; trans-N,N'-dimethylcyclohexane-1,2-diamine; In 5,5-dimethyl-1,3-cyclohexadiene; for 3h;Inert atmosphere; Reflux; | A solution of Intermediate 6a (9.36 g, 39.3 mmol) in xylene (40 mL)was purged with Argon for 30 min. In a separate flask, a mixture of 3-tertbutyl-lH-pyrazole-5-amine (5.75 g, 4 1.3 mmol), copper iodide (375 mg, 1.97mmol), trans-N,N-dimethylcyclohexane-l,2-diamine ( 1.12 g, 7.87 mmol) andpotassium carbonate ( 11.4 g, 82.6 mmol) was de-gassed and purged with Argon three times. The xylene solution was then added, via cannula to theflask and the resultant brown solution was heated at reflux for 3 h. The cooledsolution was diluted with EtOAc (40 mL) and washed with saturated aqueousammonia solution/water ( 1:1, 40 mL). The aqueous layer was extracted withEtOAc (40 mL) and the combined organics were washed with water (40 mL)and brine (40 mL), dried (Na2SO4), filtered and concentrated in vacuo toafford a solid. This was purified by FCC, using 4-7.5% MeOH in DCM, toafford the title compound (6.01 g, 61%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
25% | With copper(l) iodide; potassium carbonate; (1S,2S)-N,N'-dimethyl-1,2-diaminocyclohexane; In 5,5-dimethyl-1,3-cyclohexadiene; at 110℃; for 18h;Inert atmosphere; | b. 2-(5-Amino-3-isopropyl-[1,4']bipyrazolyl-1'-yl)-ethanol (Intermediate Ab) A mixture of 5-isopropyl-2H-pyrazol-3-ylamine (550 mg, 4.4 mmol), Intermediate Aa (1.0 g, 4.2 mmol), copper (I) iodide (40 mg, 0.21 mmol), (1S,2S)-N.N'-dimethyl cyclohexane-1,2-diamine (119 mg, 0.84 mmol) and potassium carbonate (1.22 g, 8.8 mmol) in Xylene (5 mL) was de-gassed and flushed with argon (3*). The reaction mixture was heated at 110 C. for 18 h. The mixture was poured onto a SCX-2 and eluted with MeOH and 2M NH3 in MeOH. The basic fractions were evaporated under reduced pressure to afford a brown gum. The residue obtained was purified by FCC, using 0-10% MeOH in DCM to afford the title compound (0.25 g, 25%). LCMS (Method 3): Rt 1.43 min, m/z 236 [MH+]. |
25% | With copper(l) iodide; potassium carbonate; (1S,2S)-N,N'-dimethyl-1,2-diaminocyclohexane; In 5,5-dimethyl-1,3-cyclohexadiene; at 110℃; for 18h;Inert atmosphere; | A mixture of 5-isopropyl-2H-pyrazol-3-ylamine (550 mg, 4.4 mmol), Intermediate Aa (1.0 g, 4.2 mmol), copper (I) iodide (40 mg, 0.21 mmol), (1 S,2S)- N.N'-dimethyl cyclohexane-l ,2-diamine (1 19 mg, 0.84 mmol) and potassium carbonate (1.22 g, 8.8 mmol) in Xylene (5 mL) was de-gassed and flushed with argon (3x). The reaction mixture was heated at 1 10C for 18 h. The mixture was poured onto a SCX-2 and eluted with MeOH and 2M NH3 in MeOH. The basic fractions were evaporated under reduced pressure to afford a brown gum. The residue obtained was purified by FCC, using 0-10% MeOH in DCM to afford the title compound (0.25 g, 25%). LCMS (Method 3): Rt 1.43 min, m/z 236 [MH+]. |
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