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Chemical Structure| 138006-41-4 Chemical Structure| 138006-41-4

Structure of 138006-41-4

Chemical Structure| 138006-41-4

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Product Details of [ 138006-41-4 ]

CAS No. :138006-41-4
Formula : C5H2BrCl2N
M.W : 226.89
SMILES Code : BrC1=CC(=CN=C1Cl)Cl
MDL No. :MFCD06659484
InChI Key :CDBHWRZEXFQNBI-UHFFFAOYSA-N
Pubchem ID :12901596

Safety of [ 138006-41-4 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H335
Precautionary Statements:P261-P305+P351+P338

Computational Chemistry of [ 138006-41-4 ] Show Less

Physicochemical Properties

Num. heavy atoms 9
Num. arom. heavy atoms 6
Fraction Csp3 0.0
Num. rotatable bonds 0
Num. H-bond acceptors 1.0
Num. H-bond donors 0.0
Molar Refractivity 41.96
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

12.89 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

2.06
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

3.17
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

3.15
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

2.44
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

3.39
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

2.84

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-3.74
Solubility 0.0416 mg/ml ; 0.000183 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-3.11
Solubility 0.176 mg/ml ; 0.000774 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-4.12
Solubility 0.0174 mg/ml ; 0.0000766 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Moderately soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-5.43 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

1.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.76

Application In Synthesis of [ 138006-41-4 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 138006-41-4 ]

[ 138006-41-4 ] Synthesis Path-Downstream   1~35

  • 2
  • [ 71171-66-9 ]
  • [ 138006-41-4 ]
  • [ 138006-42-5 ]
  • 3
  • [ 138006-41-4 ]
  • [ 208516-15-8 ]
  • [ 217090-24-9 ]
  • 5
  • [ 138006-41-4 ]
  • etoricoxib [ No CAS ]
  • 6
  • [ 138006-41-4 ]
  • N-tert-Butyl-4-(5-chloro-6'-methyl-[2,3']bipyridinyl-3-yl)-benzenesulfonamide [ No CAS ]
  • 7
  • [ 1072-98-6 ]
  • potassium nitrite [ No CAS ]
  • [ 138006-41-4 ]
  • 9
  • [ 138006-41-4 ]
  • [ 126642-39-5 ]
  • 10
  • [ 138006-41-4 ]
  • [ 138126-72-4 ]
  • 11
  • [ 138006-41-4 ]
  • [ 138006-44-7 ]
  • 12
  • [ 138006-41-4 ]
  • [ 138006-43-6 ]
  • 13
  • [ 137628-16-1 ]
  • [ 138006-41-4 ]
YieldReaction ConditionsOperation in experiment
81.76 g (89%) With trichlorophosphate; In N,N-dimethyl-formamide; EXAMPLE 3 3-Bromo-2,5-dichloropyridine To a solution of 3-bromo-5-chloropyridin-2-one (84.3 g, 0.404 mol) in DMF (100 mL) was added POCl3 (56.5 mL, 0.61 mol) via dropping funnel over 3 hours at room temperature. The resulting black solution was then heated to 70 C. and allowed to stir for 3 days. After cooling to room temperature, the solution was poured into 1 L of ice/water, filtered, and the solid dried in a vacuum oven to provide 81.76 g (89%) of the desired 3-bromo-2,5-dichloropyridine as an off-white solid, m.p. 39-41 C.: IR(CHCl3) 3867, 3663, 2989, 2734, 1812, 1606, 1547, 1400, 1366, 1230, 1155, 1129, 1074, 1027, 894, 658, 563 cm-1; 1 H NMR (300 MHz, CDCl3) delta 8.0 (d, 1H, J=2.2 Hz), 8.35 (d, 1H, J=2.2 Hz); 13 C NMR (CDCl3) delta 120.43, 130.74, 141.46, 146.64, 148.99; exact mass calculated for C5 H2 NBrCl2 =224.8748; high resolution mass spec. 224.8764.
  • 14
  • [ 138006-41-4 ]
  • [ 59782-85-3 ]
YieldReaction ConditionsOperation in experiment
With n-butyllithium; carbon dioxide; In petroleum; di-isopropyl ether; water; Reference Example 9 A solution of <strong>[138006-41-4]3-bromo-2,5-dichloropyridine</strong> (10g) in diisopropyl ether was added dropwise to a stirred solution of n-butyllithium (2.5 M in hexanes, 17.7ml) in diisopropyl ether at -70oC under an inert atmosphere so that the reaction temperature did not exceed -68oC. An excess of solid carbon dioxide was then added to the suspension and the mixture was stirred for 2 hours (excess carbon dioxide evaporates, temperature reaches 10oC.). Ice/water was added, the mixture was stirred. The layers were separated. The aqueous layer was acidified to pH 2 with concentrated hydrochloric acid. The resulting precipitate was extracted into diethyl ether. The ether extracts were washed with water, dried (magnesium sulphate) and evaporated to yield a solid which was triturated in light petroleum to yield 2,5-dichloronicotinic acid as a cream solid (7.04g), m.p. 160-162oC.
  • 15
  • [ 936011-18-6 ]
  • [ 138006-41-4 ]
  • [ 936011-19-7 ]
YieldReaction ConditionsOperation in experiment
With n-butyllithium; In hexane; di-isopropyl ether; at -78℃; for 0.5h; To a stirred solution of nBuLi (1.6 M in hexane, 10.4 mL, 16.6 mL) in diisopropyl ether (30 mL) was added <strong>[138006-41-4]3-bromo-2,5-dichloropyridine</strong> (3.78 g, 16.6 mmol) in diisopropylether (10 mL) slowly at -78 0C. The resulting suspension was treated with 2-methoxy-5-vinylisonicotinaldehyde (1.36 g, 8.33 mmol) in diisopropylether (10 mL) and allowed to stir for 30 min at -78 0C followed by warming to room temperature. The mixture was diluted with EtOAc, washed with water and brine, dried (Na2SO4), concentrated, and purified by flash chromatography to afford the title compound. 1H NMR (600 MHz, CDCl3) delta 8.32 (d, IH); 8.25 (s, IH); 7.69 (d, IH); 6.71 (dd, IH); 6.68 (s, IH); 6.21 (s, IH); 5.57 (dd, IH); 5.30 (dd, IH); 3.95 (s, 3H).
With n-butyllithium; In hexane; di-isopropyl ether; at -78℃; for 0.5h; Step 3: (2,5-dichloropyridin-3-yl)(2-methoxy-5-vinylpyridin-4-yl)methanol; To a stirred solution of nBuLi (1.6 M in hexane, 10.4 mL, 16.6 mL) in diisopropyl ether (30 mL) was added <strong>[138006-41-4]3-bromo-2,5-dichloropyridine</strong> (3.78 g, 16.6 mmol) in diisopropylether (10 mL) slowly at -78 0C. The resulting suspension was treated with 2-methoxy-5-vinylisonicotinaldehyde (1.36 g, 8.33 mmol) in diisopropylether (10 mL) and allowed to stir for 30 min at -78 0C followed by warming to room temperature. The mixture was diluted with EtOAc, washed with water and brine, dried (Na2SO4), concentrated, and purified by flash chromatography to afford the title compound. 1H NMR (600 MHz, CDCl3) delta 8.32 (d, IH); 8.25 (s, IH); 7.69 (d, IH); 6.71 (dd, IH); 6.68 (s, IH); 6.21 (s, IH); 5.57 (dd, IH); 5.30 (dd, IH); 3.95 (s, 3H).
  • 16
  • [ 893620-48-9 ]
  • [ 138006-41-4 ]
  • [ 936011-14-2 ]
YieldReaction ConditionsOperation in experiment
With n-butyllithium; In tetrahydrofuran; hexane; di-isopropyl ether; at -78℃; for 0.5h; To a stirred solution of nBuLi (1.6 M in hexane, 5.5 mL, 8.8 mL) in diisopropyl ether (20 mL) was added <strong>[138006-41-4]3-bromo-2,5-dichloropyridine</strong> (2.0 g, 8.8 mmol) in diisopropylether (10 mL) slowly at - 78 0C. The resulting suspension was treated with 2-vinylnicotinaldehyde (1.2 g, 8.8 mmol) in THF (5 mL) and allowed to stir for 30 min at -78 0C followed by warming to room temperature. The mixture was diluted with EtOAc, washed with water and brine, dried (Na2SO4), concentrated, and purified by flash chromatography to afford the title compound. 1H NMR (600 MHz, CDCl3) delta 8.58 (dd, IH); 8.32 (d, IH); 7.83 (d, IH); 7.54 (dd, IH); 7.21 (dd, IH); 7.06 (dd, IH); 6.42 (dd, IH); 6.37 (br s, IH); 5.58 (dd, IH); 2.79 (br s, IH). LRMS (ESI) calc'd for (C13H10Cl2N2O) [M+H]+, 281.0; found 280.7.
With n-butyllithium; In tetrahydrofuran; hexane; di-isopropyl ether; at -78℃; for 0.5h; Step 2: (2,5-dichloropyridin-3-yl)(2-vinylpyridin-3-yl)methanol; To a stirred solution of nBuLi (1.6 M in hexane, 5.5 mL, 8.8 mL) in diisopropyl ether (20 mL) was added 3-bromo-2,5-dichlororhoyridine (2.0 g, 8.8 mmol) in diisopropylether (10 mL) slowly at - 78 0C. The resulting suspension was treated with 2-vinylnicotinaldehyde (1.2 g, 8.8 mmol) in THF (5 mL) and allowed to stir for 30 min at -78 0C followed by warming to room temperature. The mixture was diluted with EtOAc, washed with water and brine, dried (Na2SO4), concentrated, and purified by flash chromatography to afford the title compound. 1H NMR (600 MHz, CDCl3) delta 8.58 (dd, IH); 8.32 (d, IH); 7.83 (d, IH); 7.54 (dd, IH); 7.21 (dd, IH); 7.06 (dd, IH); 6.42 (dd, IH); 6.37 (br s, IH); 5.58 (dd, IH); 2.79 (br s, IH). LRMS (ESI) calc'd for (C13HiOCl2N2O) [M+H]+, 281.0; found 280.7.
  • 17
  • [ 138006-41-4 ]
  • [ 100-51-6 ]
  • [ 202409-82-3 ]
YieldReaction ConditionsOperation in experiment
With sodium hydride; In N,N-dimethyl-formamide; at 100℃; for 0.75h;Microwave irradiation; In a microwave tube NaH (60% in paraffin. 56 mg. 1.4 mmol) was washed with hexane and 3-bromo-2.5-dichloro-pyridine (245 mg. 1.08 mmol) in dry DMF (2 mL) were added. To this suspension BnOH (123 muL. 1.23 mmol) in dry DMF (1 mL) was dropped carefully. The reaction mixture was stirred 15 min until the formation of hydrogen has ceased. The tube was sealed and stirred at 100 C in a microwave reactor for 30 min. After removal of the solvent in vacuo the residue was partioned between water (10 mL) and DCM (10 mL) and extracted with DCM (3 x 10 mL). The combined organic fractions were washed with brine, dried overNa2SO4. filtered and concentrated in vacuo. The resulting title compound was used for the next reaction without purification. GC-MS (m/z): 297 [M+] .
  • 18
  • [ 50595-15-8 ]
  • [ 138006-41-4 ]
  • [ 1240288-29-2 ]
YieldReaction ConditionsOperation in experiment
A solution of 2-te/f-butyl glycolate (437 mg; 3.31 mmol) in anhydrous THF (5 ml.) was treated with NaH (159 mg; 3.97 mmol) and stirred at RT for 10 minutes before treating with a solution of <strong>[138006-41-4]3-bromo-2,5-dichloropyridine</strong> (Matrix; 500 mg; 2.20 mmol) in anhydrous THF (5 ml_). The resulting reaction mixture was stirred for 22 hours. The reaction mixture was treated with a solution of 2-te/f-butyl glycolate (437 mg; 3.31 mmol) in THF (2 ml), then with NaH (159 mg; 3.97 mmol) and the reaction mixture was stirred for 16 h. The reaction was quenched with tBuOH, the sovent removed under reduced pressure affording a brown solid, which was purified by flash column chromatography (silica), eluting with cyclohexane containing increasing amounts of EtOAc, affording the title compound as a yellow sticky solid.1H NMR (300MHz, DMSOd6) delta [ppm] 8.33 (1 H, d, J= 2.3 Hz), 8.21 (1 H, d, J= 2.3 Hz), 4.86 (2H, s), 1.38 (9H, s). HPLC (Condition A) Rt 5.1 min.
  • 19
  • [ 138006-41-4 ]
  • [ 1289151-71-8 ]
  • 20
  • [ 138006-41-4 ]
  • [ 57260-71-6 ]
  • [ 1289094-51-4 ]
YieldReaction ConditionsOperation in experiment
54.4% With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 160 - 165℃; for 0.25h; Step Ml. A mixture of tert-butyl piperazine- l-carboxylate (186 mg, 0.996 mmol), 3-bromo- 2,5-dichloropyridine (226mg, 0.996 mmol), and DIEA (174 muEpsilon, 0.996 mmol) in NMP was heated at 160-165 C for 15 min. Silica gel column purification with 5% EtOAc in DCM gave tert-butyl 4-(3-bromo-5-chloropyridin-2-yl)piperazine-l-carboxylate (204mg, 0.542 mmol, 54.4 % yield). White solid. ^- MRCCDCls, 500MHz) delta 8.18 (1H, s), 7.80 (1H, s), 3.58 (4H,m), 3.26(4H,m), 1.49 (9H, s),
  • 21
  • 3-bromo-5-chloropyridine-N-oxide [ No CAS ]
  • [ 97966-00-2 ]
  • [ 138006-41-4 ]
  • 22
  • [ 107-21-1 ]
  • [ 138006-41-4 ]
  • 2-((3-bromo-5-chloropyridin-2-yl)oxy)ethan-1-ol [ No CAS ]
YieldReaction ConditionsOperation in experiment
61% With 18-crown-6 ether; potassium hydroxide; In toluene; at 120℃; for 4h; A mixture of ethane-1, - o . g, .93 mmol), 3-bromo-2,5- dichloropyridine (2.47 g, 10.9 mmol), potassium hydroxide (1.22 g, 21.7 mmol), (1170) 1,4,7,10,13,16-hexaoxacyclooctadecane (1.15 g, 4.35 mmol), and toluene (50 mL) was stirred for four hours at 120 C. The mixture was cooled, and diluted with water. The mixture was extracted three times with dichloromethane. The combined organic layers were concentrated, and the resulting residue was purified by MPLC eluting with a gradient of 20-50% ethyl acetate in petroleum ether to afford 2-((3-bromo-5-chloropyridin-2-yl)oxy)ethan-1-ol (1.69 g, 61%) as a colorless oil.
  • 23
  • [ 138006-41-4 ]
  • 2-((3-(benzylthio)-5-chloropyridin-2-yl)oxy)ethan-1-ol [ No CAS ]
  • 24
  • [ 138006-41-4 ]
  • 2-((3-(benzylthio)-5-chloropyridin-2-yl)oxy)ethyl acetate [ No CAS ]
  • 25
  • [ 138006-41-4 ]
  • 2-((5-chloro-3-(chlorosulfonyl)pyridin-2-yl)oxy)ethyl acetate [ No CAS ]
  • 26
  • [ 138006-41-4 ]
  • methyl (S,E)-3-(4-((2-(2-acetoxyethoxy)-5-chloropyridin-3-yl)sulfonyl)-6-(2-(2-chloro-6-fluorophenyl)prop-1-en-1-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazin-2-yl)propanoate [ No CAS ]
  • 27
  • [ 138006-41-4 ]
  • methyl (S,E)-3-(4-((5-chloro-2-(2-hydroxyethoxy)pyridin-3-yl)sulfonyl)-6-(2-(2-chloro-6-fluorophenyl)prop-1-en-1-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazin-2-yl)propanoate [ No CAS ]
  • 28
  • [ 138006-41-4 ]
  • [ 155742-48-6 ]
  • 4-(((3-bromo-5-chloropyridin-2-yl)oxy)methyl)oxazole [ No CAS ]
  • 29
  • [ 138006-41-4 ]
  • [ 7646-85-7 ]
  • C5H2Cl3NZn [ No CAS ]
  • 30
  • [ 138006-41-4 ]
  • 2-((2',5'-dichloro-[3,3'-bipyridin]-2-yl)methyl)isoindoline-1,3-dione [ No CAS ]
  • 31
  • [ 138006-41-4 ]
  • 2-chloropyrido[3,2-f][1,7]naphthyridine [ No CAS ]
  • 32
  • [ 138006-41-4 ]
  • 2,5-dichloro-2'-methyl-3,3'-bipyridine [ No CAS ]
  • 33
  • [ 138006-41-4 ]
  • C11H8ClN3 [ No CAS ]
  • 34
  • [ 138006-41-4 ]
  • 2,5-dichloro-2'-(chloromethyl)-3,3'-bipyridine [ No CAS ]
  • 35
  • [ 138006-41-4 ]
  • 3,3'-dibromo-2,2',5,5'-tetrachloro-4,4'-bipyridine [ No CAS ]
 

Historical Records

Technical Information

Categories

Related Functional Groups of
[ 138006-41-4 ]

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Related Parent Nucleus of
[ 138006-41-4 ]

Pyridines

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