Structure of 135908-33-7
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CAS No. : | 135908-33-7 |
Formula : | C10H17NO2 |
M.W : | 183.25 |
SMILES Code : | O=C(C1(CC2)CCC2(N)CC1)OC |
MDL No. : | MFCD20693756 |
InChI Key : | HDIKFAFEMDBXOS-UHFFFAOYSA-N |
Pubchem ID : | 53426661 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 13 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.9 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 49.73 |
TPSA ? Topological Polar Surface Area: Calculated from |
52.32 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.13 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.54 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.21 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.31 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.57 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.35 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.18 |
Solubility | 12.0 mg/ml ; 0.0654 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.21 |
Solubility | 11.3 mg/ml ; 0.0616 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.79 |
Solubility | 2.95 mg/ml ; 0.0161 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.03 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.15 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogen;20 % Pd(OH)2/C; In methanol; at 20℃; for 1h; | Preparation of Bicyclic Amine 2 (BA-2) methyl 4-aminobicyclo[2.2.2]octane-1-carboxylateTo a solution of methyl 4-[(benzyloxy)carbonyl]amino}bicyclo[2.2.2]octane-1-carboxylate (BAI-6, 951 mg, 3 mmol) in methanol (50 mL) was added Pd(OH)2/C (100 mg). Hydrogen gas was bubbled through the stirred reaction mixture for 1 hour at room temperature. After filtration, the filtrate was concentrated to give the titled compound. 1H NMR (400 MHz, CDCl3) delta ppm 3.64 (s, 3H), 1.841.88 (m, 6H), 1.73 (s, 2H), 1.531.57 (m, 6H); LCMS (ESI+) m/z 184 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
27% | With dmap; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; In dichloromethane; at 20℃; for 18h; | A mixture containing methyl 4-aminobicyclo[2.2.2]octane-l-carboxylate (298mg, 1.63 mmol), 4'-tert-butylbiphenyl-2-carboxylic acid (414 mg, 1.63 mmol), DMAP (227 mg, 1.86 mmol) and EDC HCl (470 mg, 2.45 mmol) in CH2Cl2 (5 mL) was stirred at room temperature for 18 h. The reaction mixture was concentrated under reduced pressure and the resulting residue was purified by chromatography (elution = 16:1 petrolueum ether/EtOAc) to afford methyl 4-(4'-fcrt-butylbiphenyl-2- ylcarboxamido)bicyclo[2.2.2]octane-l -carboxylate as an off-white solid (186 mg, yield: 27%). 1H NMR (400 MHz, CDCl3): delta 7.74 (IH, d, J= 6.4 Hz), 7.48-7.39 (4H, m), 7.35- 7.31 (3H, m), 4.77 (IH, s), 3.62 (3H, s), 1.79-1.75 (6H, m), 1.62-1.58 (6H, m), 1.36 (9H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
12% | With hydrogen;palladium 10% on activated carbon; In methanol; at 20℃; under 760.051 Torr; for 48h; | In a typical run, methyl 4-(benzyloxycarbonylamino)bicyclo[2.2.2]octane-l- carboxylate (2.14 g, 14.1 mmol) was taken up in MeOH (50 mL) along with 10% Pd on C (300 mg) and flushed thoroughly with nitrogen. The reaction mixture was stirred at room temperature under 1 atm of hydrogen for 2 days. The mixture was filtered through a pad of Celite and the filtrate was concentrated under reduced pressure. The crude product was taken up in CH2Cl2 and extracted with dilute 1 N HCl. The combined aqueous layers were neutralized with NaHCO3 and then extracted with CH2Cl2. The combined organic layers were dried (Na2SO4) and concentrated under reduced pressure to afford methyl 4- aminobicyclo[2.2.2]octane-l -carboxylate as an oil (298 mg, yield: 12%). 1H NMR (400 MHz, DMSO): delta 3.59-3.54 (3H, m), 1.74-1.68 (6H, m), 1 .39-1.34 (6H, m). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
at 100℃; for 5h;Neat (no solvent); Inert atmosphere; | Example 874-[N-cyano-2-methyl-2-phenoxypropanimidoyl]amino}bicyclo[2.2.2]octane-1-carboxylic acidEthyl N-cyano-2-methyl-2-phenoxypropanimidoate (CI-1) (1 mmol) and <strong>[135908-33-7]methyl 4-aminobicyclo[2.2.2]octane-1-carboxylate</strong> (BA-2) (1 mmol) were mixed, and the neat mixture was heated to 100 C. under nitrogen and stirred for 5 hours. After cooling, the mixture was purified by column chromatography on silica gel (mobile phase:CH2Cl2/CH3OH=50/1) to give an impure ester product which was dissolved in methanol (10 mL). To the solution was added a solution of LiOH (10 mg) in methanol (40 mL) and water (1 mL). The mixture was refluxed overnight. After removal of the solvent, the residue was dissolved in water and adjusted pH=56 with HCl (1 mol/L), extracted with ethyl acetate (50 mL×3). The combined extracts were washed with brine, dried over sodium sulfate and concentrated. The residue was purified by preparative reverse phase HPLC [Waters 2767; Benetnach 10-C18 20×250 mm, 10 mum; 35-60% acetonitrile/water (0.05% trifluoroacetic acid), 30 mL/minute; detection at 214 and 254 nm] to give the titled compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
20% | General procedure: Example 69: 4-(((6-((trans-4-(tert-butyl)cyclohexyl)oxy)quinolin-2-yl)methyl)amino)bicyclo[2.2.2] octane-l-carboxylic acid Step 1: methyl 4-(((6-((trans-4-(tert-butyl cyclohexyl oxy quinolin-2-yl methyl amino bicyclor2.2.21oct ane- 1 -carboxylate 2) NaBH(OAc)3 (3 eq), it, 1 h Y: 30% The solution of 6-((trans-4-(tert-butyl)cyclohexyl)oxy)quinoline-2-carbaldehyde (200 mg, 0.6 mmol) and methyl 4-aminobicyclo[2.2.2]octane-l-carboxylate (142 mg, 0.644 mmol) in Ethanol (2 mL, 30 mmol) was heated to reflux for 2h. The yellow solution was cooled to room temperature and sodium cyanoborohydride (48.6 mg, 0.773 mmol) was added and was heated to reflux for lh. After cooled down to room temperature, citric acid was added and concentrated down. The solid was suspended in water and filtrate, and the collected solid was washed thoroughly with water. HPLC purification of the solid give the product (62.7 mg, 20%). LCMS Rt = 1.67 min, m/z = 479.30 [M+l]. Lithium hydroxide (15.7 mg, 0.655 mmol) was added to a solution of 4-{ [6-(trans-4-tert-Butyl-cyclohexyloxy)-quinolin-2-ylmethyl]-amino}-bicyclo[2.2.2]octa ne-l-carboxylic acid methyl ester (62.7 mg, 0.131 mmol) in tetrahydrofuran (0.8 mL, 10 mmol) and methanol (0.8 mL, 20 mmol). The mixture was stirred at 50 C overnight, the solvent was concentrated. The residue was taken up in DMSO and cone. HCl (200 uL) was added to solubilize. Purification by preparative HPLC gave the product as a white solid (63 mg, 20%). LCMS (100%, RT=1.57 min, m/z=465.30. 1H NMR (400 MHz, METHANOL-d4) delta ppm 0.94 (s, 9 H) 1.06 - 1.60 (m, 5 H), 1.86 - 1.99 (m, 2H), 2.00- 2.10 (m, 12 H), 2.24 - 2.37 (m, 2 H) 4.32 - 4.46 (m, 1 H) 4.49 (s, 2 H) 7.34 (d, J=2.51 Hz, 1 H) 7.42 (dd, J=9.29, 2.76 Hz, 1 H), 7.47 (d, J=8.53 Hz, 1 H) 8.01 (d, J=9.29 Hz, 1 H) 8.28 (d, J=8.28 Hz, 1 H). Step 2: 4-(((6-((trans-4-(tert-butyl)cvclohexyl)oxy)quinolin-2-yl)methyl)amino)bicyclor2.2.21oct ane-l-carboxylic acid Lithium hydroxide (15.7 mg, 0.655 mmol) was added to a solution of 4-{ [6-(trans-4-tert-butyl-cyclohexyloxy)-quinolin-2-ylmethyl]-amino}-bicyclo[2.2.2]octa ne-l-carboxylic acid methyl ester (62.7 mg, 0.131 mmol) in tetrahydrofuran (0.8 mL, 10 mmol) and methanol (0.8 mL, 20 mmol). The mixture was stirred at 50 C overnight, the solvent was concentrated. The residue was taken up in DMSO and cone. HCl (200 uL) was added to solubilize. Purification by preparative HPLC gave the product as a white solid (2.3 mg, 4%). LCMS (100%, RT=1.57 min, m/z=465.30. 1H NMR (400 MHz, METHANOL-d4) delta ppm 0.94 (s, 9 H) 1.06 - 1.60 (m, 5 H), 1.86 - 1.99 (m, 2H), 2.00- 2.10 (m, 12 H), 2.24 - 2.37 (m, 2 H) 4.32 - 4.46 (m, 1 H) 4.49 (s, 2 H) 7.34 (d, J=2.51 Hz, 1 H) 7.42 (dd, J=9.29, 2.76 Hz, 1 H), 7.47 (d, J=8.53 Hz, 1 H) 8.01 (d, J=9.29 Hz, 1 H) 8.28 (d, J=8.28 Hz, 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | General procedure: Example 1: 4-(((6-(cyclohexyloxy)naphthalen-2-yl)methyl)amino) bicyclo[2.2.2]octane-l-carboxylic acid Step 1: 4-(((6-hvdroxynaphthalen-2-yl methyl amino bicvclor2.2.21octane-l-carboxylate 6-hydroxy-2-naphthaldehyde (520 mg, 3.02 mmol, 1.0 eq) and methyl 4-aminobicyclo[2.2.2]octane-l-carboxylate (663 mg, 3.62 mmol, 1.2 eq) were dissolved in toluene (100 mL). Magnesium sulfate (72 mg, 0.60 mmol, 0.2 eq) was added to the solution and refluxed for 48 h. The solvent was removed in vacuo. The residue was dissolved in THF (150 mL) and sodium cyanoborohydride (571 mg, 9.06 mmol, 3.0 eq) was added. The mixture was refluxed for 24 h. The solvent was removed in vacuo. Water (50 mL) was added to the residue and extracted with EtOAc (2x150 mL). The combined organic phase was washed with brine and dried over Na2S04. The organic phase was concentrated to give methyl 4-(((6-hydroxynaphthalen-2-yl)methyl)amino)bicyclo[2.2.2]octane-l-carboxylate as yellow solid (819 mg, Y: 80%). ESI-MS (M+H)+: 340.2. 1H NMR (400 MHz, DMSO-d6) delta: 9.98 (s, 1H), 8.91 (br, 1H), 7.89 (s, 1H), 7.77 (d, / = 9.2 Hz, 1H), 7.75 (d, / = 8.4 Hz, 1H), 7.47 (dd, /= 8.4, 1.6 Hz, 1H), 7.15 (s, 1H), 7.14 (dd, /= 8.0, 2.4 Hz, 1H), 4.17 (s, 2H), 3.60 (s, 3H), 1.91-1.87 (m, 12H). Step 2: 4-(((6-(cvclohexyloxy naphthalen-2-yl methyl amino bicvclor2.2.21octane-l-carboxylic acid Methyl 4-(((6-hydroxynaphthalen-2-yl)methyl)amino)bicyclo[2.2.2]octane-l-carboxylate (100 mg, 0.295 mmol, 1.0 eq), cyclohexyl methanesulfonate (100 mg, 0.885 mmol, 3.0 eq) and sodium hydroxide (35 mg, 0.875 mmol, 3.0 eq) were dissolved in DMF (2 mL). The mixture was stirred at 100 C for 2 h. After cooling to rt, 1 N HCl was added to adjust pH = 6-7 and extracted with DCM (2x40 mL). The organic phase was washed with brine and dried over Na2S04. After filtration and concentration, the residue was purified by prep-HPLC (65% MeOH/H20) to give 4-(((6-(cyclohexyloxy)naphthalen-2-yl)methyl)amino)bicyclo[2.2.2]octane-l-carboxylic acid as a white solid (40 mg, yield: 33% in two steps). ESI-MS (M+H)+: 408.2. 1H NMR (400 MHz, CD3OD) delta: 7.89 (s, 1H), 7.84 (d, /= 8.4 Hz, 1H), 7.81 (d, /= 8.8 Hz, 1H), 7.49 (dd, /= 8.8, 2.0 Hz, 1H), 7.28 (d, / = 2.0 Hz, 1H), 7.20 (dd, / = 8.8, 2.4 Hz, 1H), 4.52-4.48 (m, 1H), 4.24 (s, 2H), 2.04-1.99 (m, 14H), 1.86-1.83 (m, 2H), 1.63-1.47 (m, 6H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
59% | Example 82: 4-(((6-((trans-4-(tert-butyl)cyclohexyl)oxy)naphthalen-2-yl)methyl)amino)bicyclo[2.2 .2]octane-l-carboxylic acid Step 1: 4-{ r6-(trans-4-tert-Butyl-cyclohexyloxy)-naphthalen-2-ylmethyll-amino|-bicyclor2.2.21o ctane-l-carboxylic acid methyl ester A solution of 6-(4-tert-Butyl-cyclohexyloxy)-naphthalene-2-carbaldehyde (238 mg, 0.767 mmol) (WO 2011/017561 Al) and methyl 4-aminobicyclo[2.2.2]octane-l-carboxylate (168 mg, 0.767 mmol) (Prime Organics) in Ethanol (2 mL, 30 mmol) was heated to reflux for 2h. The yellow solution was cooled to room temperature and Sodium cyanoborohydride (57.8 mg, 0.920 mmol) was added and heated to reflux for 3d. The mixture was cooled and concentrated. The solid was suspended in aqueous NaHC03 and EtOAc, The organic layer was washed with brine, dried and concentrated. Column chromatography in Silica gel with MeOH/DCM gives a solid as the product (217mg, 59% yield). LCMS: Rt = 1.69 min m/z 478.30 [M+l]. 1H NMR (400 MHz, CHLOROFORM-d) delta ppm 0.88 - 0.95 (m, 9 H) 1.02 - 1.35 (m, 9 H) 1.35 - 1.54 (m, 2 H) 1.60 - 1.73 (m, 6 H) 1.75 - 1.87 (m, 6 H) 1.90 (d, J=12.99 Hz, 2 H) 2.27 (d, J=11.67 Hz, 2 H) 3.66 (s, 3 H) 3.85 (s, 2 H) 4.17 - 4.35 (m, 1 H) 7.02 - 7.17 (m, 2 H) 7.39 (d, J=8.41 Hz, 1 H) 7.61 - 7.78 (m, 3 H). Step 2: 4-(((6-((trans-4-(tert-butyl)cyclohexyl)oxy)naphthalen-2-yl)methyl)amino)bicyclor2.2.21o ctane-l-carboxylic acid 2 M Lithium hydroxide, monohydrate in Water(2 mL, 4 mmol) was added to a solution of 4-{ [6-(trans-4-tert-Butyl-cyclohexyloxy)-naphthalen-2-ylmethyl]-amino}-bicyclo[2.2.2]o ctane-l-carboxylic acid methyl ester (217 mg, 0.454 mmol) in Tetrahydrofuran (2 mL, 20 mmol) and Methanol (1 mL, 20 mmol). The mixture was stirred at 70 C overnight. The solvent was concentrated. The residue was taken up in DMSO and TFA (200 mu,) was added to solubilize. Purification by preparative HPLC gave the product (135mg, 64%). HPLC (100%, RT=1.483 min), LCMS (100%, RT=1.64 min, m/z=464.30). 1H NMR (400 MHz, METHANOL-d4) delta ppm 0.94 (s, 9 H) 1.03 - 1.56 (m, 5 H) 1.94 (d, J=14.56 Hz, 2 H) 2.03 (d, J=7.03 Hz, 12 H) 2.29 (d, J=11.23 Hz, 2 H) 4.27 (s, 2 H) 4.33 - 4.46 (m, 1 H) 7.19 (d, J=11.36 Hz, 1 H) 7.30 (s, 1 H) 7.49 (d, J=8.41 Hz, 1 H) 7.82 (d, J=8.97 Hz, 1 H) 7.87 (d, J=8.60 Hz, 1 H) 7.90 (s, 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
23% | Example 8 : 4- (((2- ((trans-4- (tert-butyl)c clohexyl)oxy) -4-methylnaphthalen- l-yl)methyl)amino)bicyclo[2.2.2]octane-l-carboxylic acid To a mixture of 2-(cis-4-tert-butylcyclohexyloxy)-4-methyl-l-naphthaldehyde (lOOmg, 0.31 mmol, 1.0 eq) in toluene (1 mL) were added methyl 4- aminobicyclo[2.2.2]octane-l-carboxylate hydrochloride (81 mg, 0.37 mmol, 1.2 eq) and MgS04 (74 mg, 0.62 mmol, 2.0 eq). The resulting mixture was heated to reflux and stirred for 48 h. After being concentrated under reduced pressure, the residue was dissolved in THF (lmL). NaBH(OAc)3 (196 mg, 0.93 mmol, 3.0 eq) was added and the mixture was heated to reflux and stirred for 24 h. After cooling down to room temperature, the residue was diluted with EtOAc (5 mL). The suspension was filtered and the filtrate was concentrated under reduced pressure to give the residue, which was purified by column chromatography on silica gel (petroleum ether /EtOAc = 1/1) to yield the target ester (35 mg, 23 % yield) as a yellow oil. LCMS m/z 492.4 [M+H] +. Hydrolysis following standard condition gave the title compound as a white solid (20 mg, 69% yield). LCMS m/z 478.3 [M+H] +; 1H NMR (400 MHz, CD3OD) delta: 8.06- 8.01 (m, 2H), 7.61-7.59 (m, 1H), 7.49-7.47 (m, 1H), 7.36 (s, 1H), 4.54 (bs, 3H), 2.74 (s, 3H), 2.32-2.29 (m, 2H), 2.16 (bs, 12H), 1.99-1.94 (m, 2H), 1.54-1.51 (m, 2H), 1.34-1.24 (m, 2H), 1.20-1.14 (m, 1H), 0.91 (s, 9H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
549 mg | HATU (616 mg, 1.62 mmol), DIEA (0.550 mL, 3.24 mmol) were added to a suspension of acid 1(500 mg, 1.08 mmol) in DCM (15 mL) and stuffed. After 10 minutes, methyl 4-aminobicyclo[2.2.2joctane-1-carboxylate (396 mg, 2.16 mmol) and DMAP (132 mg, 1.08 mmol) were added to the reaction. After overnight, the solvent was removed in vacuo and the crude was purified by column chromatography to give 549 mg of intermediate II. |
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