Structure of 128376-65-8
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 128376-65-8 |
Formula : | C12H15BO3 |
M.W : | 218.06 |
SMILES Code : | CC1(C)COB(OC1)C1=CC=C(C=O)C=C1 |
MDL No. : | MFCD06796332 |
InChI Key : | JUHDMCQVJGHKFW-UHFFFAOYSA-N |
Pubchem ID : | 4197234 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 16 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.42 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 63.16 |
TPSA ? Topological Polar Surface Area: Calculated from |
35.53 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.32 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.27 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.77 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.73 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.22 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.8 |
Solubility | 0.346 mg/ml ; 0.00159 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.7 |
Solubility | 0.43 mg/ml ; 0.00197 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.47 |
Solubility | 0.0742 mg/ml ; 0.00034 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.98 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.68 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | In tetrahydrofuran; at 20℃; for 2h;Product distribution / selectivity; | To a solution of 4-formylphenylboronic acid (4.11 g) in anhydrous tetrahydrofuran (THF) (40 ml_) was added 2,2-dimethyl-1 ,3-propanediol (3.14 g) and the mixture was stirred at room temperature for 2 hours. The solvent was evaporated to dryness. The residue was dissolved in dichloromethane (120 ml_), washed with water (80 ml_ x 3), dried and evaporated under vacuum to obtain 4-(5,5-dimethyl-[1 ,3,2]dioxaborinan-2-yl)-benzaldehyde (5.66 g, 95% yield). |
In toluene; for 2h;Heating / reflux;Product distribution / selectivity; | To a mixture of 4-formylphenylboronic acid (50 g) in toluene (250 ml_) was added 2,2-dimethyl-1 ,3-propanediol (34.39 g) and the dispersion was heated at reflux for 2 h. The water while formed was azeotropically separated and the residue (330 ml_) was used directly in the next step. 1H-NMR (400 MHz,CDCI3): delta 1.04 (s, 6 H, 2 CH3), 3.79 (s, 4 H, 2 CH2), 7.84 (d, J = 6.4 Hz, 2 H, H-Ar), 7.96 (d, J = 8 Hz, 2 H, H-Ar), 10.04 (s, 1 H, CHO) ppm. | |
In toluene; for 2h;Heating / reflux; | Example 1 : Preparation of 4-(5,5-dimethyl-H ,3,21dioxaborinan-2-yl)- benzaldehvde;To a mixture of 4-formylphenylboronic acid (50 g) in toluene (250 mL) was added 2,2-dimethyl-1 ,3-propanediol (34.39 g) and the dispersion was heated at reflux for 2 h. The water while formed was azeotropically separated and the residue (330 mL) was used directly in the next step.1H-NMR (400 MHz, CDCI3): delta 1.04 (s, 6 H, 2 CH3), 3.79 (s, 4 H, 2 CH2), 7.84 (d, J = 6.4 Hz, 2 H,H-Ar), 7.96 (d, J = 8 Hz, 2 H, H-Ar), 10.04 (s, 1 H, CHO) ppm. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In tetrahydrofuran; at 20℃; for 72h;Molecular sieve;Product distribution / selectivity; | A mixture of L-Valine methyl ester hydrochloride (548 mg), 4-(5,5-dimethyl- [1 ,3,2]dioxaborinan-2-yl)-benzaldehyde (476 mg) and molecular sieves in anhydrous THF (17 ml_) was stirred at room temperature for three days. Then, the mixture was cooled to O0C and a solution of NaBH3CN (155 mg) in dry MeOH (3 ml_) was added dropwise. The mixture was stirred at room temperature for 4 hours and the solids were removed by filtration. The filtrate was evaporated under vacuum to yield the desired product (632 mg) that was used in the next reaction without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In toluene; for 1h;Heating / reflux;Product distribution / selectivity; | A mixture of L-Valine benzyl ester tosylate (132.7 g), 4-(5,5-dimethyl- [1 ,3,2]dioxaborinan-2-yl)-benzaldehyde (330 ml_), Et3N (48.4 ml_) and toluene (413 ml_) was heated at reflux temperature for 1 h. The water while formed was azeotropically separated. Then, the mixture was cooled to room temperature and the solution was washed with aqueous NaHCO3 (317 ml_ x 2) and water (317 ml_). The residual water was azeotropically removed. The toluene was partially distilled (134 ml_) and MeOH (134 ml_) was added. The solution was then cooled to 0-5 0C and NaBH4 (6.5 g) was slowly added. The reaction mixture was stirred at room temperature overnight. Then the solvent was partially distilled (half volume) and the residue was washed with aqueous NaHCO3 (270 ml_). The separated aqueous phase was extracted with toluene (135 ml_ x 2). The combined organic phases were then washed with water (135 ml_). The residual water in the organic layer was azeotropically removed and the residue (aprox. 730 ml_) was used directly in the next step. 1H-NMR (400 MHz, CDCI3): delta 0.91 and 1.02 (s and m, 12 H, CH3), 1.77 (bs, 1 H, NH), 1.93 (m, 1 H, CH(CH3)2), 1.82 (bs, 1 H, NH), 3.05 (d, 1 H, J = 6.4 Hz, CH-N), EPO <DP n="18"/>3.58 and 3.83 (2 d, J = 13.2 Hz, 1 H each, CH2-Ph), 5.16 (s, 2 H, CH2-Ph), 7.28 (d, 2 H, J = 8 Hz, H-Ar), 7.36 (bs, 5 H, H-Ar), 7.73 (d, 2 H, J = 8 Hz, H- Ar) ppm. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A mixture of L-Valine methyl ester hydrochloride (6.77 g), anhydrous MgSO4 (5.51 g) and Et3N (5.68 ml_) in anhydrous THF (40 ml_) was stirred for 15 minutes. To this solution was added while stirring at 0-50C 4-(5,5-dimethyl- [1 ,3,2]dioxaborinan-2-yl)-benzaldehyde (5.87 g) and the mixture was stirred at room temperature for 24 hours. The precipitated salts were removed by filtration and the filtrate evaporated under vacuum. The residue was dissolved in anhydrous methanol (120 ml_) and to this solution was added NaBH4 (1.59g) in small portions, for 1 h The resulting mixture was stirred at room temperature for 3 hours. Then, was cooled to O0C and water (10 ml_) was added dropwise. The reaction mixture was concentrated under vacuum, and the residue was partitioned between dichloromethane (100 ml_) and water (500 ml_). Extraction was carried with dichloromethane (2 x 50 ml_) followed by drying and evaporating to dryness to obtain 8.86 g of the desired product that was used in the next reaction without further purification. 1H-NMR (400 MHz, CDCI3): delta 0.92-0.96 (m, 6 H, 2 CH3 (1Pr)), 1.02 (s, 6 H, C(CH3J2), 1 -77 EPO <DP n="16"/>(bs, 1 H, NH), 1.91 (m, 1 H, CH(CH3)2), 3.01 (d, 1 H, J = 6.0 Hz, CH-N), 3.59 and 3.85 (2 d, 1 H each, J = 13 Hz, CH2-Ph), 3.71 (s, 3 H, CH3O), 3.76 (s, 4 H, 2CH2O), 7.32 (d, 2 H, J = 8 Hz, H-Ar), 7.75 (d, 2 H, J = 8 Hz, H-Ar) ppm. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A mixture of L-Valine benzyl ester tosylate (0.5 g), anhydrous MgSO4 (0.18 g) and Et3N (0.19 ml_) in anhydrous THF (6.6 ml_) was stirred for 15 minutes. To this solution was added while stirring at 0-50C 4-(5,5-dimethyl- [1 ,3,2]dioxaborinan-2-yl)-benzaldehyde (0.19 g) and the mixture was stirred at room temperature for 24 hours. The precipitated salts were removed by filtration and the filtrate evaporated under vacuum. The residue was dissolved in anhydrous methanol (6.6 ml_) and to this solution was added NaBH4 (52 mg) in small portions, for 1 h The resulting mixture was stirred at room temperature for 3 hours. Then, was cooled to O0C and water (2 ml_) was added dropwise. The reaction mixture was concentrated under vacuum, and the residue was partitioned between dichloromethane (15 ml_) and water (30 ml_). Extraction was carried with dichloromethane (2 x 5 ml_) followed by drying and evaporating to dryness to obtain 426 mg of the desired product that was used in the next reaction without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A mixture of L-Valine tert-butyl ester hydrochloride (1 g), anhydrous MgSO4 (732 mg) and Et3N (0.67 ml_) in anhydrous THF (24 ml_) was stirred for 15 minutes. To this solution was added while stirring at 0-50C 4- formylphenylboronic acid (799 mg) and the mixture was stirred at room temperature overnight. The precipitated salts were removed by filtration and the filtrate evaporated under vacuum. The residue was dissolved in anhydrous methanol (24 ml_) and to this solution was added NaBH4 (208 mg) in small portions, for 1 h The resulting mixture was stirred at room temperature for 3.5 h. Then, was cooled to O0C and water (8 ml_) was added dropwise. The reaction mixture was concentrated under vacuum, and the residue was partitioned between dichloromethane (35 ml_) and water (100 ml_). Extraction was carried with dichloromethane (4 x 15 ml_) followed by drying and evaporating to dryness to obtain 1.44 g of the desired product that was used in the next reaction without further purification. 1H-NMR (400 MHz, CDCI3): delta 0.94 and 0.95 (2 d, 3 H each, J = 6.8 Hz, 2 CH3 (1Pr)), 1.02 (s, 6 H, C(CHa)2), 1 -48 (s, 9 H, 'Bu), 1.94 (m, 1 H, CH(CH3)2), 2.89 (d, 1 H, J = 6.0 Hz, EPO <DP n="21"/>CH-N), 3.65 and 3.89 (2 d, 1 H each, J = 13.4 Hz, CH2-Ph), 3.76 (s, 4 H, 2 CH2O), 7.35 (d, 2 H, J = 8 Hz, H-Ar), 7.75 (d, 2 H, J = 8 Hz, H-Ar) ppm. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 3: Preparation of (benzyl N-r4-(5,5-dimethyl-H ,3,21dioxaborinan-2- yl)phenyl-4-yl-methyll-L-valinate); A mixture of L-Valine benzyl ester tosylate (132.7 g), 4-(5,5-dimethyl- <n="19"/>[1 ,3,2]dioxaborinan-2-yl)-benzaldehyde (330 ml_), Et3N (48.4 mL) and toluene (413 mL) was heated at reflux temperature for 1 h. The water while formed was azeotropically separated. Then, the mixture was cooled to room temperature and the solution was washed with aqueous NaHCO3 (317 mL x 2) and water (317 mL). The residual water was azeotropically removed. The toluene was partially distilled (134 mL) and MeOH (134 mL) was added. The solution was then cooled to 0-5 0C and NaBH4 (6.5 g) was slowly added. The reaction mixture was stirred at room temperature overnight. Then the solvent was partially distilled (half volume) and the residue was washed with aqueous NaHCO3 (270 mL). The separated aqueous phase was extracted with toluene (135 mL x 2). The combined organic phases were then washed with water (135 mL). The residual water in the organic layer was azeotropically removed and the residue (aprox. 730 mL) was used directly in the next step. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
10% | 1,3-bis[(diphenylphosphino)propane]dichloronickel(II); In toluene; at 100℃; for 18h;Product distribution / selectivity; | A round-bottom flask charged with the aryl halide (5.0 mmol, 1.0 equiv), Ni (For exact amount of catalyst and co-ligand see Table 8; 10% loading was used for Ni catalysts not specified in Table 8). (NiCl2(L)x , Ni(COD)2) or Pd (No co-ligand was used for Pd catalyst) catalysts (PdCl2(dppf)) (0.5 mmol, 0.1 to 0.02 equiv), ligand (L: dppp, dppe, dppf, PPh3, Et3N, bpy, PCy3) (0.5 mmol, 0.1 equiv), and a Teflon coated stir bar was evacuated three times for 10 min under high vacuum and backfilled with N2. Toluene (5 mL) and base (Et3N or (i-Pr)2EtN (15.0 mmol, 3.0 equiv) were added to the reaction mixture at rt. Freshly prepared neopentylglycolborane (10.0 mmol, 2.0 equiv in 5 ml toluene) was added to the red colored suspension via syringe at 23 0C. The reaction mixture was heated to 100 0C and the conversion was followed by GC. After 2 h-12 h (reaction time depends on the type of the aryl halide; iodo derivatives were found to react faster, in 2-4 h , while bromo derivatives in 8-12h), the reaction mixture was quenched via slow addition of saturated aqueous ammonium chloride (10 mL). The quenched reaction mixture was three times washed with saturated aqueous ammonium chloride and extracted with ethyl acetate (50 mL). The combined organic layers were dried over anhydrous MgSO4, filtered, and concentrated. The crude product was purified by silica gel chromatography or recrystallization. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Intermediate 71 1-[4-(5,5-dimethyl-1,3,2-dioxaborinan-2-yl)phenyl]methyl}-4-{4-[(trifluoromethyl)oxy]phenyl} piperidine Intermediate 71 was prepared according to a method similar to that described in WO 2006/067216 (page 41 ), as described below:A mixture of 4-{4-[(trifluoromethyl)oxy]phenyl}piperidine (4.91 g, 20.03 mmol) and N, N- diisopropylethylamine (5.95 ml, 33.4 mmol) in anhydrous THF (25ml) was stirred at room temp for 15 minutes. To this solution was added while stirring at 0-5C 4-(5,5-dimethyl- 1 ,3,2-dioxaborinan-2-yl)benzaldehyde (3.639 g, 16.69 mmol) and the mixture was stirred at 5O0C overnight. The residue was concentrated to dryness under vacuum and re- dissolved in anhydrous ethanol (25ml). To this solution previously cooled at O0C was added sodium borohydride (840 mg, 22.2 mmol) in small portions during 1 h. The resulting mixture was stirred at room temperature. After 3 hours the reaction was completed. Solvent was evaporated under vacuum and residue was cooled to O0C and partitioned between dichloromethane and water. Aqueous phase was extracted with dichloromethane (2x20ml). Combined organic phase was dried (Na2SO4), filtered and concentrated to dryness to give 5.25 g of a brown solid. Residue was triturated with few drops of methanol and acetonitrile. Solid was filtrated through a glass frited funnel and filtrate was concentrated under vacuum to dryness. 3.4 g of the title compound as an off-white solid were collected and dried under vacuum.1H-NMR(delta, ppm, CDCI3): 7.77(d, 2H); 7.35(d, 2H); 7.23(d, 2H); 7.12(d, 2H); 3.77(s, 4H); 3.59(d, 2H); 3.02(m, 2H); 2.50(s, 1H); 2.10(m,2H); 1.80(m, 2H); 1.66(m, 2H); 1.02(s, 3H). |
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