Structure of 110568-64-4
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CAS No. : | 110568-64-4 |
Formula : | C8H6N2O3 |
M.W : | 178.15 |
SMILES Code : | O=C1NCC2=C1C=C([N+]([O-])=O)C=C2 |
MDL No. : | MFCD03093931 |
InChI Key : | QKFIHDGZIPOWKP-UHFFFAOYSA-N |
Pubchem ID : | 22220920 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 13 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.12 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 50.22 |
TPSA ? Topological Polar Surface Area: Calculated from |
74.92 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.01 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.6 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.31 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.04 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.36 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.32 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.6 |
Solubility | 4.5 mg/ml ; 0.0252 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.75 |
Solubility | 3.19 mg/ml ; 0.0179 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.27 |
Solubility | 0.961 mg/ml ; 0.0054 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.96 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.67 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With ammonia; In methanol; at 20℃; for 2h; | 2- (bromomethyl) -4-nitrobenzoate (250mg, 0.92 mmol) was added to a saturated methanolic ammonia (NH3) in (5mL red, stirred at room temperature for 2 hours, TLC the reaction was complete. Save the solvent was distilled off pressure, to the residue was added ethyl acetate (7mL) and sonicated for 3 minutes, placed in -20 C freezer for 3 minutes, a large number of solid, filtered and dried under high vacuum to give a pale yellow solid 150mg, yield 92% |
With ammonia; In methanol; at 20℃; for 2h; | 5-Nitro-2,3-dihydroisoindol-l-one02N; [695] AIBN (58.6mg, 0.357mmol), NBS (785mg, 4.46mmol), and 2-methyl-4-nitrobenzoic acid methyl ester (696mg, 3.57mmol) were suspended in CC14 (35mL) in asealed tube. The above mixture was flushed with N2 for 5min and heated at 80C for 22h.After cooling, the solid was filtered off and the filtrate was concentrated to dryness to obtain acrude light-brown solid. To above solid was added NH3 (7 N in MeOH, 5mL), and themixture was stirred at rt for 2h and concentrated in vacua to obtain a yellow solid. This crudesolid was triturated with EtOAc (15mL) and was then cooled at -20 C. The mixture wasfiltered to obtain the title compound as yellow solid. 'H NMR (DMSO-^, 400 MHz): 5 =4.51 (s, 2 H), 7.13 (bra, 2 H), 7.91 (d, 1 H, J= 8.4 Hz), 8.25 (dd, 1 H, J= 2.0 & 8.4 Hz), 8.48(d, 1 H, J= 2.0 Hz), 9.04 (brs, 1 H). MS (ES+): m/z 179.22 (100) [MH1]. HPLC: fe = 2.14min (ZQ2000, polar_5 min). | |
With ammonia; In methanol; at 20℃; for 2h; | Step B: 5-nitroisoindoiin-1 -one A suspension of <strong>[133446-99-8]methyl <strong>[133446-99-8]2-(bromomethyl)-4-nitrobenzoate</strong></strong> in ammonium solution (7 N in methanol, 5 mL) was stirred at room temperature for 2 hours and concentrated in vacuum to obtain a yellow solid. This crude solid was triturated with ethyl acetate (15 mL) and was then cooled at -20 C. The mixture was filtered to obtain the product 5-nitroisoindolin-1 -one as yellow solid. N R (400 MHz, DMSO-d6) delta ppm 9.04 (br s, 1 H), 8.48 (d, 1 H, J = 2.0 Hz), 8.25 (dd, 1 H, J = 2.0 Hz, 8.4 Hz), 7.91 (d, 1 H, J = 8.4 Hz), 4.51 (s, 2 H). |
With ammonium hydroxide; ammonia; In methanol; at 20℃; | Crude 7C (70 g, 0.26 mol) was suspended in 2M NH3inMeOH (700 mL) and concentratedammonium hydroxide (250 mL) at room temperature overnight. The mixturewasfilteredto affordcrude 7D (35g) as a white solid. | |
With ammonia; In methanol; at 20℃; | Step 3: Synthesis of 5-Nitro-2,3-dihydro-isoindol-1-one The crude from the previous step (4 g) was placed in a 100 ml round bottom flask, then a solution of 7N NH3 in MeOH was added. The mixture was stirred at room temperature, overnight. The mixture was concentrated down to a solid residue, then triturated with 75 ml ethylacetate. The suspension was filtered off, solid was dried to give 1.8 g product, pure by HNMR, 64% over 2 steps yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With hydrogenchloride; iron; In ethanol; water; for 2h;Heating; | A mixture of 5-nitro-1 lead noise isobutyl ketone Jie (100mg, 0.56mmoL), reduced iron powder (314mg, 5.6mmoL) was added to ethanol (2. OmL) and concentrated hydrochloric acid (0.5mL) and heated under reflux for 2 hours , TLC the reaction was complete. Cooling, the methanol solution saturated with ammonia (NH3) neutralizing the acid, diatomaceous earth filtration, washed with methanol, the solvent evaporated under reduced pressure to give a white solid 70.0mg, 84% yield |
76.2% | With hydrogen;palladium 10% on activated carbon; In methanol; for 1h; | Step C / Intermediate B8: 5-aminoisoindoiin-1 -oneTo a solution of 5-nitroisoindolin-1 -one (60 mg, 0.337 mmoi) in methanol (20 mL) was added palladium on carbon (10 %, 50 mg). The mixture was stirred under an atmosphere of hydrogen for 1 hour. Filtration through Celite, followed by concentration led to 5-aminoisoindoiin-1 -one as a tan solid (38 mg, yield 78.2 %). |
48% | With iron; ammonium chloride; In ethanol; water; at 80℃; for 2h; | Step 4: Synthesis of 5-Amino-2,3-dihydro-isoindol-1-one To a suspension of Fe (1.1 g, 19.6 mmole), NH4Cl (1.5 g, 28 mmole) in a mixture of ethanol/water (30 ml/7 ml) at 80 C. was added a mixture of 5-Nitro-2,3-dihydro-isoindol-1-one (1 g, 5.6 mmole) in 10 ml ethanol. The reaction mixture was stirred at 80 C. for 2 hours. Mixture was cooled down, filtered off, solid was washed with 50 ml ethanol. The filtrate was concentrated, taken into 50 ml ethylacetate, washed with 20 ml water. Organic layer was dried over Na2SO4, filtered and concentrated to give about 900 mg crude. Trituration with methyl t-butylether gave 400 mg pure product, 48% yield. A 18 ml vial was loaded with a mixture of 30% H2O2 (1 ml), 3N NaOH (3 ml) and MeOH (2.5 ml). To this mixture 5-Amino-pyridine-2-carbonitrile (450 mg, 3.78 mmole) was added at room temperature. Reaction mixture was stirred at rt for 45 minutes, TLC showed the starting material to be consumed. The mixture was diluted with water and filtered; the solid was washed with water and dried to give 480 mg product, 92% yield. |
With hydrogenchloride; ethanol; water; iron; at 95℃; for 2h; | 5-Amino-2,3-dihydroisoindol-l-oneH2N; [693] Iron powder (158mg, 2.83mmol), water (61uL), and HC1 (37%, 5uL,0.566mmol) were added into the suspension of 5-nitro-2,3-dihydroisoindol-l-one (50.4mg,0.283mmol) in EtOH (754|^L). The above mixture was heated at 95C for 2h. After thattime, several drops of 7N NH3 in MeOH were added to basify the solution, and the solid wasfiltered off. The filtrate was concentrated in vacua to obtain a light-yellow solid that waspurified by preparative TLC eluting with 10% MeOH/CH2Cl2 to give a light-yellow solid of5-amino-2,3-dihydroisoindol-l-one. 'HNMR (CD3OD, 400 MHz): 5 = 7.48 (s, 1 H), 8.08 (s,2 H), 9.91 (s, 1 H), 10.66 (d, 1 H, J= 8.8 Hz). MS (ES+): m/z 149.21 (100) [MH1"]. HPLC: *R= 1.20 min (ZQ2000, polar_5 min). | |
With hydrogen;palladium on activated charcoal; In methanol; for 1h;Inert atmosphere; | To a solution of <strong>[110568-64-4]5-nitro-2,3-dihydro-1H-isoindol-1-one</strong> (60 mg, 0.337 mmol) in methanol (20 mL) was added 50 mg of 10% Pd on carbon. The mixture was hydrogenated (with a balloon) for 1 hour. Filtration through Celite followed by concentration led to 38 mg of 5-amino-2,3-dihydro-1H-isoindol-1-one as a tan solid. | |
Step 3: 5-aminoisoindolin-1-oneIron powder (2.51 g, 45 mmol), water (0.97 ml) and HCl (37%, 0.74 ml), were added to a stirred suspension of the <strong>[110568-64-4]5-nitroisoindolin-1-one</strong> (800 mg, 4.5 mmol) from step 2 of this example in EtOH (11.2 ml). The mixture was heated at 95 C for 2h. Ammonia (7N in MeOH) was added (ImL) to make the pH of the mixture alkaline. The mixture was filtered to removed undissolved solids and the filter cake washed with EtOH (2x40 ml). The filtrate and organic washes were combined and concentrated in vacuum to give the titled compound. | ||
With palladium on activated charcoal; hydrogen; In methanol; at 50℃; under 2585.81 Torr; for 2h; | Toa solution of7D (35 g, 0.2 mol) in MeOH(350 mL) was added Pd/C (7 g), the mixture was stirred at 50C underH2 at 50 psi for 2 hr.Themixturewas filtered and concentratedin vacuumto afford crude7E (30g) as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A mixture of <strong>[62621-09-4]methyl 2-methyl-4-nitrobenzoate</strong> (696 mg, 3.57 mmol), 2,2'-azobis(2-methylpropionitrile (59 mg, 0.357 mmol), and N-bromosuccinimide (785 mg, 4.46 mmol) in CCl4 (35 mL) in a sealed tube was flushed with N2 for 5 minutes, and heated at 80 C. for 24 hours. The mixture was filtered through Celite, and the filtrate was concentrated. To the residue was added 7 mL saturated ammonium in methanol. The mixture was stirred at room temperature for 2 hours, and concentrated. The residue was triturated with ethyl acetate, and the product was collected by filtration to give 100 mg of 5-nitro-2,3-dihydro-1H-isoindol-1-one as a light tan solid. | ||
Step 2 : 5 -nitroisoindolin- 1 -oneAIBN (84 mg, 0.51), NBS (1.1 gram, 6.4 mmol), and the <strong>[62621-09-4]methyl 2-methyl-4-nitrobenzoate</strong> (1 g, 5.1 mmol) from step 1 of this example were suspended in CCLt and the mixture heated under N2 at 79 C overnight. The solution was filtered, and concentrated in vacuum. The residue was dissolved in 7 N ammonia in methanol (15 ml) and the solution stirred for 2 hours at RT. The mixture was concentrated in vacuum, and the resulting solid suspended in EtOAc (21.5 ml), heated at 80 C for 30 minutes with stirring, cooled RT and aged at -20 C for the 3 days. The solid was isolated by filtration to give the titled compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With ammonia; triethylamine; In methanol; for 24h;Reflux; | Step c:[00295] A mixture of 2-Bromomethyl-4-nitro-benzoic acid methyl ester (leq.) an appropriate amine (1.1 eq.), Et3N (l.leq), and 10 mL of methanol is refluxed for 24hrs. The mixture is diluted with EtOAc, washed with HCl (IN) and brine, dried over MgSO4, and evaporated. The residue is purified by flash chromatography. to afford the expected compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61% | With dmap; In 1,4-dioxane; at 20℃;Inert atmosphere; | To a solution of 5-nitroisoindolin-l-one (600 mg, 3.37 mmol) in dioxane (30 mL) under a nitrogen atmosphere was added DMAP (616 mg, 5.05 mmol) followed by di-to -butyl dicarbonate (1.16 mL, 5.05 mmol). The resulting reaction mixture was stirred at room temperature overnight, then poured onto water and extracted with EtOAc (3X). The combined organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under reduced pressure. The crude residue was purified by chromatography (20% EtOAc in hexanes eluent followed by 20:20:80 DCM: EtOAc: hexane eluent) to provide tot-butyl 5-nitro-l-oxoisoindoline-2-carboxylate (576 mg, 61% yield) as a white solid. NMR (300 MHz, Chloroform-i ) delta 8.43 - 8.35 (m, 2H), 8.10 (d, J = 8.9 Hz, 1H), 4.90 (s, 2H), 1.64 (s, 9H). |
57% | With dmap; In acetonitrile; at 20℃; for 12h; | Synthesis of tert-butyl 5-nitro-1-oxoisoindoline-2-carboxylate (2) To a stirred solution of <strong>[110568-64-4]5-nitroisoindolin-1-one</strong> (1, 0.4 g, 2.24 mmol) in acetonitrile (20 mL), N,N-dimethylaminopyridine (0.41 g, 3.37 mmol) followed by di-tert-butyl dicarbonate (0.75 mL, 3.37 mmol) were added. The reaction mixture was allowed to stir at room temperature for 12 h. The reaction mixture was quenched with water and extracted with ethyl acetate. The organic layer was washed with brine, separated, dried over sodium sulphate and concentrated under reduced pressure. The crude was purified by silica gel column chromatography using 25% ethyl acetate in hexane to afford tert-butyl 5-nitro-1-oxoisoindoline-2-carboxylate (2). Yield: 0.36 g, 57%; MS (ESI) m/z 279 [M+1]+. |