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Chemical Structure| 108499-32-7 Chemical Structure| 108499-32-7

Structure of 108499-32-7

Chemical Structure| 108499-32-7

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Product Details of [ 108499-32-7 ]

CAS No. :108499-32-7
Formula : C7H7BrO2S
M.W : 235.10
SMILES Code : O=C(C1=CC=C(CBr)S1)OC
MDL No. :MFCD09834150
InChI Key :GFOPHLFSDVVYGB-UHFFFAOYSA-N
Pubchem ID :11424851

Safety of [ 108499-32-7 ]

GHS Pictogram:
Signal Word:Danger
Hazard Statements:H302-H314
Precautionary Statements:P264-P270-P271-P280-P303+P361+P353-P304+P340-P305+P351+P338-P310-P330-P331-P363-P403+P233-P501
Class:8
UN#:3265
Packing Group:

Computational Chemistry of [ 108499-32-7 ] Show Less

Physicochemical Properties

Num. heavy atoms 11
Num. arom. heavy atoms 5
Fraction Csp3 0.29
Num. rotatable bonds 3
Num. H-bond acceptors 2.0
Num. H-bond donors 0.0
Molar Refractivity 48.43
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

54.54 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

2.37
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

2.38
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

2.28
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

1.75
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

3.36
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

2.43

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-2.94
Solubility 0.273 mg/ml ; 0.00116 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-3.17
Solubility 0.16 mg/ml ; 0.000682 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-3.01
Solubility 0.231 mg/ml ; 0.000984 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.04 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

0.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

1.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

2.7

Application In Synthesis of [ 108499-32-7 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 108499-32-7 ]

[ 108499-32-7 ] Synthesis Path-Downstream   1~35

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  • [ 19432-69-0 ]
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YieldReaction ConditionsOperation in experiment
100% With N-Bromosuccinimide; dibenzoyl peroxide; In chloroform; for 7h;Reflux; Add freshly recrystallised NBS (323.8 g, 1.81 mol) to a solution of methyl-5- methylthiophene-2-carboxylate (258 g, 1.65 mol) in chloroform (2.6 L) at room temperature, and stir. Add benzoyl peroxide (3.99 g, 0.016 mol) and heat the reaction mixture to reflux for 7 hours. Cool the reaction mixture to ambient temperature and filter through diatomaceous earth. Wash the filter cake with chloroform (250 ml). Collect the organic layers and remove the solvent to give the title compound (388 g, 100%), which is used without further purification. ESI (m/z) 236(M+H).
90% With N-Bromosuccinimide; 2,2'-azobis(isobutyronitrile); In tetrachloromethane; at 80℃; for 2h; A mixture of compound 26.1, NBS (6.26 g, 35.2 mmol) and AIBN (0.03 g, 0.18 mmol) in CCl4 (20 mL) was heated to 8O0C for 2 hours, then cooled to room temperature, filtered, washed with cold CH2Cl2 / CCl4 (1 :1). The filtrate was concentrated to provide compound 26.2 as major product (90%) and was used in the next step without purification.
85% With N-Bromosuccinimide; 2,2'-azobis(isobutyronitrile); In tetrachloromethane; at 80℃; for 2h; To a stirred solution of compound 20 (2.50 g, 17.58 mmol) in MeOH (30.00 mL) cooled to 0 C, SOCl2 (5.11 mL, 7.32 mmol) was added and the reaction was stirred at 25 C for 12 h. A 2 N solution of NaOH was added and volatiles were removed under reduced pressure. The aqueous phase was extracted with DCM (3 x 25.00 mL) and the combined organic layers were dried over Na2SO4, filtered and evaporated. Methyl 5-methylthiophene-2-carboxylate was obtained in quantitative yield without any further purification. ESI-MS m/z 179 [M+Na]+; 1H NMR (300 MHz, CDCl3) delta 2.51 (s, 3H), 3.84 (s, 3H), 6.75 (d, J =3.1 Hz, 1H), 7.60 (d, J = 3.1 Hz, 1H). To a solution of the previously synthesized ester (3.00 g, 16.85 mmol) in CCl4 (15.00 mL), N-bromosuccinimide (2.70 g, 15.17 mmol)and azobisisobutyronitrile (catalytic amount) were added, and the reaction was stirred at 80 C for 2 h. The reaction was cooled to 25 C and filtered on asmall plug of Celite. Volatiles were removed under reduced pressure and the crude was purified by means of chromatography on silica gel (5 % diethyl ether in petroleum ether) to afford title compound (85 % yield) as a transparent oil. ESI-MS m/z 233-235 [M+H]+; 1H NMR (300 MHz, CDCl3) delta 3.87 (s, 3H), 4.66 (s, 2H), 7.08 (d, J = 3.8Hz, 1H), 7.62 (d, J = 3.8 Hz, 1H).
82% With N-Bromosuccinimide; dibenzoyl peroxide; In tetrachloromethane; for 12h;Reflux; The methyl ester 13, (2.4 g, 15.5 mmol) was refluxed in CC1< in the presence of NBS (3 g, 17 mmol) and benzoyl peroxide (121 mg, 0.03 equiv) for 12 h. The reaction was cooled to 0 C and filtered. Organics was filtered, dried over Na2S04 and evaporated in vacuo. Crude material was purified on silica gel column (EtOAc: Hexanes = 1:5) to give the titled compound 14. (2.9 g, 82%). XH NMR (CHCI3, 400 MHz): delta 7.64 (d, J=3.6, 1H) , 7.10 (m, 1H) , 3.90 (s, 3H) , 3.89 (s, 3H) ; 13C NMR (CHCI3, 100 MHz): 5 162.4, 149.8, 135.5, 130.2, 124.8, 52.4, 23.4; [M+H]+ = 235.1 (APCI+) .
With N-Bromosuccinimide; dibenzoyl peroxide; In chloroform; at 60℃; for 3h;Heating / reflux; N-Bromosuccinimide (Aldrich; 1.70 g, 9.6 mmol) and a catalytic amount of benzoyl peroxide were added to a solution of 5-methyl-thiophene-2-carboxylic acid methyl ester (1.40 g, 9.0 mmol) in chloroform (15 mL). The rection mixture was stirred under argon at reflux (60 C.) for 3 h, then filtered through Celite and evaporated under reduced pressure to give 5-bromomethyl-thiophene-2-carboxylic acid methyl ester (2 g) as a yellow oil which was used directly in the next step without further purification

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  • [ 1001200-44-7 ]
  • 10
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  • [ 503470-01-7 ]
YieldReaction ConditionsOperation in experiment
With sodium azide; In acetonitrile; at 60℃; for 4h; A mixture of compound 26.2 (41 g, 176 mmol) and sodium azide (22.9 g, 352 mmol) in acetonitrile (150 mL) was stirred at 600C for 4 hours. The reaction mixture was cooled and filtered. Removal of the solvent under reduced pressure provided compound 26.3, which was used without additional purification.
  • 11
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YieldReaction ConditionsOperation in experiment
95% With 1H-imidazole; bromine; triphenylphosphine; In dichloromethane; at 20℃; for 0.166667h; Bromine (0.47 mL, 9.12 mmol) was added to a solution of imidazole (617 mg, 9.06 mmol) and triphenylphosphine (2.40 g, 9.15 mmol) in CH2Cl2 (30 mL) at room temperature. A solution of methyl 5-hydroxymethyl-thiophene-2-carboxylate (prepared according to the procedures described in WO2004/037808; 1.30 g, 7.59 mmol) in CH2Cl2 (10 mL) was then added. After 10 min at room temperature, the reaction mixture was concentrated in vacuo. Purification of the crude residue by flash column chromatography on 80 g of silica gel (hexane?EtOAc, gradient) afforded 1.70 g (95%) of the title compound (B).
95% With 1H-imidazole; bromine; triphenylphosphine; In dichloromethane; at 20℃; for 0.166667h; Preparation 1; Methyl 5-bromomethyl-thiophene-2-carboxylate (B); Bromine (0.47 mL, 9.12 mmol) was added to a solution of imidazole (617 mg, 9.06 mmol) and triphenylphosphine (2.40 g, 9.15 mmol) in CH2Cl2 (30 mL) at room temperature. A solution of methyl 5-hydroxymethyl-thiophene-2-carboxylate (prepared according to the procedures described in WO2004/037808; 1.30 g, 7.59 mmol) in CH2Cl2 (10 mL) was then added. After 10 min at room temperature, the reaction mixture was concentrated in vacuo. Purification of the crude residue by flash column chromatography on 80 g of silica gel (hexane ?EtOAc, gradient) afforded 1.70 g (95%) of the title compound (B).
84% With 1H-imidazole; bromine; triphenylphosphine; In dichloromethane; at 20℃; for 4h; To a flask charged with dry dichloromethane (50 mL) was added in order triphenyl phosphine (228 mg, 0.87 mmol), imidazole (59.3 mg, 0.87 mmol) and bromine (44.6muL, 0.87 mmol). The reaction mixture was then treated with a solution of 1 (100 mg, 0.58 mmol, in <n="38"/>dichloromethane (5 niL)), dropwise and stirred at room temperature under nitrogen for 4 h. When the reaction was deemed complete the mixture was concentrated to dryness under reduced pressure and subjected to flash chromatography (20%ethyl acetate/petrol) to afford the desired 5-bromomethyl-thiophene-2-carboxylic acid methyl ester (m) as colourless crystals, (115 mg, 84%).1H NMR (300 MHz, CDCl3) delta 3.89 (3H, s, CH3), 4.67 (2H, s, CH2), 7.10 (IH, m, thienylH), 7.64 (IH, d, /=3.6Hz, thienylH).HPLCmethod2 92%/1.14 min.
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YieldReaction ConditionsOperation in experiment
39% Sodium hydride (60% oil dispersion, 26 mg, 0.65 mmol) was added to a solution of alcohol 2 (180 mg, 0.44 mmol) in DMF (1.1 mL) at 0 C. After 5 min, the reaction was allowed to warm to room temperature. After 30 min at room temperature, the mixture was cooled to a -40 C. and a solution of bromide B (Preparation 1, 125 mg, 0.53 mmol) in DMF (1.1 mL) was added via cannula. After 3 h at -40 C., the reaction was quenched with 1 N HCl (10 mL) and extracted with EtOAc (3×30 mL). The combined extracts were washed with H2O (2×15 mL) and brine (20 mL), then dried (Na2SO4), filtered and concentrated in vacuo. Purification of the crude residue by flash column chromatography on 12 g of silica gel (hexane?EtOAc, gradient) afforded 97 mg (39%) of desired product 3.
  • 13
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YieldReaction ConditionsOperation in experiment
5-Bromomethyl-2-carbomethoxythiophene (III-3). This compound was prepared from 5-methylthiophene-2-carboxylic acid by the method of Gogte et al, Tetrahedron, 23, 2443-51 (1967).
Synthesis Example 14-1: Synthesis of 2-bromomethyl-5-methoxy carbonylthiophene (Compound IV-4) 2.05 g of commercially available 5-methylthiophene carboxylic acid was dissolved in 60 ml of methanol, and then a hydrochloric acid gas was brown into the solution for 5 minutes. After 23 hours, the reaction solution was concentrated, and then a 1 mol/l sodium hydroxide aqueous solution was added thereto, followedbyextractionwithchloroform. An organic layer was washed with a saturated salt solution and was then dried with anhydrous sodium sulfate and concentrated. 500 mg of the resulting residue was dissolved in 10 ml of carbon tetrachloride, followed by the addition of 570 mg of N-bromosuccinimide and 53 mg of azobisisobutyronitrile. After the resultant solution was stirred in oil bath for 20 hours at 70C, the reaction solution was filtrated, and then the filtrate thereof was then concentrated. The resulting residue was purified by means of silica gel column chromatography (15 g, hexane/ethyl acetate = 8/1). Consequently, 516.1 mg of the above-mentioned compound was obtained as light-yellow syrup. MS(EI,Pos.):m/z=233,235[M+1]+ 1H-NMR(500MHz,CDCl3):delta=3.89(3H,s),4.68(2H,s),7.10(1H,d,J=3.7Hz),7.64(1H,d,J=3.7Hz).
With N-Bromosuccinimide; dibenzoyl peroxide; In methanol; tetrachloromethane; methyl 5-methylthiophene-2-carboxylate; (ii) 5-bromomethyl-2-carbomethoxythiophene A solution of 5-methyl-2-thiophene carboxylic acid (25 g, 0.176 mol) in 500 ml of methanol was saturated with gaseous hydrochloric acid at 0 C. The reaction mixture was stirred at room temperature for 18 hours and then refluxed for 48 hours. The solvent was removed in vacuo and the crude methyl 5-methyl-2-thiophene carboxylate was used without further purification. The methyl ester prepared above (11.07 g, 0.071 mol) was dissolved in 200 ml of carbon tetrachloride under argon. N-bromosuccinimide (13.25 g, 0.074 mol) and dibenzoyl peroxide were then added. The reaction mixture was refluxed for 2 hours and allowed to stand at room temperature for 18 hours. The solids were collected and the filtrate was concentrated in vacuo to give 19 g of 5-bromomethyl-2-carbomethoxythiophene.
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  • [ 830331-51-6 ]
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  • [ 830331-52-7 ]
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  • [ 108499-32-7 ]
  • 4-chloro-<i>N</i>-(5-{<i>N</i>'-[4-(3-chloro-5-trifluoromethyl-pyridin-2-ylamino)-butyryl]-hydrazinocarbonyl}-thiophen-2-ylmethyl)-benzamide [ No CAS ]
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  • [ 476362-82-0 ]
  • 19
  • [ 108499-32-7 ]
  • 5-[(4-<i>tert</i>-butoxy-3-carboxy-benzenesulfonylamino)-methyl]-thiophene-2-carboxylic acid methyl ester [ No CAS ]
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  • [ 476362-84-2 ]
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  • [ 476362-83-1 ]
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  • 5-({5-[1-carboxymethyl-2-(7-methyl-benzoxazol-2-yl)-2-oxo-ethylcarbamoyl]thiophen-2-ylmethyl}sulfamoyl)-2-hydroxy-benzoic acid [ No CAS ]
  • 23
  • [ 108499-32-7 ]
  • 5-[(5-{1-carboxymethyl-2-[5-(2,6-dichloro-phenyl)-oxazol-2-yl]-2-oxo-ethylcarbamoyl}thiophen-2-ylmethyl)sulfamoyl]-2-hydroxy-benzoic acid [ No CAS ]
  • 24
  • [ 108499-32-7 ]
  • 5-({5-[1-<i>tert</i>-butoxycarbonylmethyl-2-hydroxy-2-(7-methoxy-benzooxazol-2-yl)-ethylcarbamoyl]-thiophen-2-ylmethyl}-sulfamoyl)-2-hydroxy-benzoic acid <i>tert</i>-butyl ester [ No CAS ]
  • 25
  • [ 108499-32-7 ]
  • 5-({5-[1-<i>tert</i>-butoxycarbonylmethyl-2-(7-methoxy-benzooxazol-2-yl)-2-oxo-ethylcarbamoyl]-thiophen-2-ylmethyl}-sulfamoyl)-2-hydroxy-benzoic acid <i>tert</i>-butyl ester [ No CAS ]
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  • [ 503470-03-9 ]
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  • [ 108499-32-7 ]
  • [ 503470-02-8 ]
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  • [ 108499-32-7 ]
  • 5-(4'-dodecyloxy-biphenyl-4-yloxymethyl)-thiophene-2-carbonyl chloride [ No CAS ]
  • 29
  • [ 108499-32-7 ]
  • 5-(4'-dodecyloxy-biphenyl-4-yloxymethyl)-thiophene-2-carboxylic acid <i>sec</i>-butyl ester [ No CAS ]
  • 30
  • [ 108499-32-7 ]
  • 5-(4'-dodecyloxy-biphenyl-4-yloxymethyl)-thiophene-2-carboxylic acid butyl ester [ No CAS ]
  • 31
  • [ 108499-32-7 ]
  • 5-(4'-dodecyloxy-biphenyl-4-yloxymethyl)-thiophene-2-carboxylic acid 1-methyl-butyl ester [ No CAS ]
  • 32
  • [ 108499-32-7 ]
  • 5-(4'-dodecyloxy-biphenyl-4-yloxymethyl)-thiophene-2-carboxylic acid 1-methyl-pentyl ester [ No CAS ]
  • 33
  • [ 108499-32-7 ]
  • 5-(4'-dodecyloxy-biphenyl-4-yloxymethyl)-thiophene-2-carboxylic acid 1-methyl-heptyl ester [ No CAS ]
  • 34
  • [ 108499-32-7 ]
  • (R)-(+)-2-heptyl 5-(4'-dodecyloxybiphenyl-4-yloxymethyl)thiophene-2-carboxylate [ No CAS ]
  • 35
  • [ 108499-32-7 ]
  • 5-(4'-dodecyloxy-biphenyl-4-yloxymethyl)-thiophene-2-carboxylic acid octyl ester [ No CAS ]
 

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