Structure of 1072946-50-9
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1072946-50-9 |
Formula : | C6H7BClNO3 |
M.W : | 187.39 |
SMILES Code : | COC1=NC(Cl)=CC=C1B(O)O |
MDL No. : | MFCD11053817 |
InChI Key : | QMTFZVCHSRMZJW-UHFFFAOYSA-N |
Pubchem ID : | 46738928 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 45.56 |
TPSA ? Topological Polar Surface Area: Calculated from |
62.58 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.02 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
-0.58 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.57 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.55 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
-0.13 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.88 |
Solubility | 2.46 mg/ml ; 0.0131 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.92 |
Solubility | 2.23 mg/ml ; 0.0119 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.66 |
Solubility | 4.09 mg/ml ; 0.0218 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.72 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.33 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a solution of compound Int-lla (0.5 g, 1.58 mmol, prepared as described in U.S. Patent Publication No. US20090068140) in DME (15 mL) at room temperature under N2 was added PdCl2(dppf)2 (258 mg, 0.30 mmol). The reaction mixture was allowed to stir at 100 0C for 5 minutes, then a solution of compound Int-llb (592 mg, 3.16 mmol) and K2CO3 (654 mg, 4.74 mmol) in 15 mL H2O was added to the reaction mixture in 3 portions over 10 minutes. The resulting reaction was allowed to stir for an additional 30 minutes, after which time thin-layer chromatography analysis indicated consumption of compound Int-7a. The reaction was allowed to stir for an additional 30 minutes, then was concentrated in vacuo, and the residue obtained was taken up in 150 mL ethyl acetate. The organic phase was separated, washed with water (50 mL), brine and dried over sodium sulfate. After filtration, the organic layer was concentrated in vacuo and the resulting residue was purified using flash liquic chromatography (0% to 100% EtOAc/Hexane) to provide 600 mg of compound Int-llc (>; 85% purity, theory 597 mg). HPLC (C18 column Gemini 5u HOA, 150X21.2 mm, 5 micron). FABMS: MH+ = 379 | ||
To a solution of Compound Int-7d (0.5 g, 1.58 mmol) in DME (15 mL) at room temperature under N2 was added PdCl2(dppf)2 (258 mg, 0.30 mmol). The reaction mixture was allowed to stir at 100 0C for 5 minutes, then a solution of compound Int-19a (592 mg, 3.16 mmol) and K2CO3 (654 mg, 4.74 mmol) in 15 mL H2O was added to the reaction mixture in 3 portions over 10 minutes. The resulting reaction was allowed to stir for an additional 30 minutes, after which time thin-layer chromatography analysis indicated consumption of compound Int-7a. The reaction was allowed to stir for an additional 30 minutes, then was concentrated in vacuo, and the residue obtained was taken up in 150 niL ethyl acetate. The organic phase was separated, washed with water (50 rnL), brine and dried over sodium sulfate. After filtration, the organic layer was concentrated in vacuo and the resulting residue was purified using flash liquic chromatography (0% to 100% EtOAc/Hexane) to provide 600 mg of compound Int-19b (>; 85% purity, theory 597 mg). HPLC (C18 column Gemini 5u HOA, 150X21.2 mm, 5 micron). FABMS: MH+ = 379 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
EXAMPLE 15 Preparation of Intermediate Compound Int-15c (0321) (0322) To a solution of compound Int-7d (0.5 g, 1.58 mmol) in DME (15 mL) at room temperature under N2 was added PdCl2(dppf)2 (258 mg, 0.30 mmol). The reaction mixture was allowed to stir at 100 C for 5 minutes, then a solution of compound Int-15b (592 mg, 3.16 mmol) and K2CO3 (654 mg, 4.74 mmol) in 15 mL H2O was added to the reaction mixture in 3 portions over 10 minutes. The resulting reaction was allowed to stir for an additional 30 minutes, after which time thin-layer chromatography analysis indicated consumption of compound Int-7a. The reaction was allowed to stir for an additional 30 minutes, then was concentrated in vacuo, and the resulting residue was taken up in 150 mL ethyl acetate. The organic phase was separated, washed with water (50 mL), brine and dried over sodium sulfate. After filtration, the organic layer was concentrated in vacuo and the resulting residue was purified using flash liquid chromatography (0% to 100% EtOAc/Hexane) to provide 600 mg of compound Int-15c (> 85% purity, theory 597 mg). HPLC (C18 column Gemini 5u 110A, 150X21.2 mm, 5 micron). FABMS: MH+ = 379 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.075 g | With pyridine; copper diacetate; In acetonitrile; for 6h;Molecular sieve; Reflux; | Production Example 1 (0478) A mixture of 0.5 g of 1-(2-[{(1H-pyrazol-3-yl)}oxymethyl]-3-methylphenyl)-4-methyl-1,4-dihydrotetrazol-5-one mentioned in Reference Production Example 26, 0.4 g of <strong>[1072946-50-9]6-chloro-2-methoxypyridine-3-boronic acid</strong>, 0.48 g of copper(II) acetate, 0.75 g of Molecular Sieves 4A, 0.3 mL of pyridine, and 5 mL of acetonitrile was stirred with heating under reflux for 6 hours. After cooling, the reaction mixture was filtered and the filtrate was concentrated under reduced pressure. The residue thus obtained was subjected to silica gel column chromatography to obtain 0.075 g of 1-(2-[1-(6-chloro-2-methoxypyridin-3-yl)-1H-pyrazol-3-yl]oxymethyl}-3-methylphenyl)-4-methyl-1,4-dihydrotetrazol-5-one (hereinafter referred to as the present compound 1). (0479) 1H-NMR (CDCl3) delta: 8.05-8.02 (2H, m), 7.40-7.37 (2H, m), 7.27-7.24 (1H, m), 7.01 (1H, d, J=8.2 Hz), 5.80 (1H, d, J=2.7 Hz), 5.30 (2H, s), 4.06 (3H, s), 3.64 (3H, s), 2.54 (3H, s). |
0.075 g | With pyridine; copper diacetate; In acetonitrile; for 6h;Molecular sieve; Reflux; | The 0.5g of 1- (2 - [{(1H- pyrazol-3-yl) oxy} methyl] -3-methyl-phenyl) -4-methyl-1,4-dihydro-tetrazol - 5-one (prepared in reference Example 26 mentioned), 0.4g of 6-chloro-2-methoxy-3-boronic acid, 0.48g of copper acetate (II), 0.75g of molecular sieve 4A, 0.3mL of mixture of pyridine and 5mL of acetonitrile was heated under reflux for 6 hours with stirring. After cooling, the reaction mixture was filtered and the filtrate was concentrated under reduced pressure. The thus obtained residue was subjected to silica gel column chromatography to obtain 0.075 g of 1- (2 - [1- (6-chloro-2-methoxy-pyridin-3-yl) lH-pyrazol-3-yl ] oxy} methyl 3-methylphenyl) -4-methyl-1,4-dihydro-tetrazol-5-one (hereinafter referred to as the present compound 1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With potassium phosphate; dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; In tetrahydrofuran; at 80℃;Inert atmosphere; Sealed tube; | A 150 mL pressure flask was charged with (6-chloro-2-methoxypyridin-3- yl)boronic acid (2.5 g, 13.3 mmol) and 2,5-dibromo-3-nitropyridine (3.38 g, 12.01 mmol). The solids were suspended in THF (60 mL). The mixture was treated with PdCl2(dppf)-CH2Cl2 adduct (0.545 g, 0.667 mmol) and K3P04 (2M, 20 mL, 40 mmol). Argon was bubbled through the mixture for 5 min while sonicating. The flask was capped and heated to 80C in a preheated oil bath. The reaction was cooled to room temperature. The reaction mixture was filtered and the filtrate was concentrated to remove THF. The remaining water layer was diluted further with water and was extracted with ethyl acetate. The organic layer was dried over MgS04, filtered and concentrated under vacuum to give a solid. The material was taken up in DCM and a minimum of ethyl acetate and purified by flash column chromatography (80g ISCO column, 0-30% ethyl acetate/hexanes over 600 mL, then 50-100% over 300 mL). Like fractions were concentrated to give 4.5g (78%). NMR (400MHz, CDCh) delta 8.94 (d, J=2.0 Hz, 1H), 8.44 (d, J=2.0 Hz, 1H), 7.97 (d, J=8.0 Hz, 1H), 7.14 (d, J=7.8 Hz, 1H), 3.89 (s, 3H). LC/MS (M+H) = 345.95 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
55% | With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In 1,4-dioxane; water; at 90℃; for 16h; | Step 1: 6-Chloro-N-methyl-N-(2,2,6,6-tetramethylpiperidin-4-yl)pyridazin-3-amine (280 mg, 1.0 mmol) was dissolved in 10 mL, a mixture of dioxane and water (4: 1). To the solution was added sodium carbonate (190 mg, 3 eq), <strong>[1072946-50-9](6-chloro-2-methoxypyridin-3-yl)boronic acid</strong> (190 mg, 1 eq) and Pd(Ph3P)4 (70 mg, 0.1 eq). The reaction mixture was stirred at 90 C for 16 h, then applied to a column and purified using DCM/MeOH to yield (133 mg, 55%) 6-(6-chloro-2- methoxypyridin-3-yl)-N-methyl-N-(2,2,6,6-tetramethylpiperidin-4-yl)pyridazin-3-amine. LC-MS: 390 [M+H]+. 1H NMR (500 MHz, DMSO-d6) delta: 8.25 (d, J=7.88 Hz, 1H), 7.83 (d, J=9.77 Hz, 1H), 7.24 (d, J=7.88 Hz, 1H), 7.11 (d, J=9.77 Hz, 1H), 5.00 - 5.24 (m, 1H), 3.93 (s, 3 H), 2.87 - 2.96 (m, 3H), 1.40 - 1.57 (m, 4H), 1.21 - 1.29 (m, 7H), 1.10 (br s, 6H |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium phosphate; dichloro[1,1'-bis(di-t-butylphosphino)ferrocene]palladium(II); In tetrahydrofuran; water; at 20 - 60℃; for 2h; | PdCb(DTBPF) (45 mg, 0.069 mmol) was added to a stirred mixture of (S)-tert- butyl 4-bromo-2-(l-((tert-butoxycarbonyl)amino)-7-(oxazol-2-yl)-7-oxoheptyl)-lH-imidazole-l- carboxylate (24B, 634 mg, 1.171 mmol), <strong>[1072946-50-9](6-chloro-2-methoxypyridin-3-yl)boronic acid</strong> (252 mg, 1.345 mmol) and K3PO4 (810 mg, 3.82 mmol) in co-solvents of THF (7 ml) and water (0.7 ml) at rt and the mixture was stirred at 60C for 2 h. The mixture was diluted with water (20 mL), extracted with DCM (3 x 15 mL). The combined organic fractions were washed with brine (saturated, 20 mL), dried (Na2S04), filtered and the solvent was evaporated under reduced pressure. The residue was purified by silica gel column flash chromatography, eluting with petroleum ether / EtOAc = 0-20 to give (S)-tert-butyl 2-(l-((tert-butoxycarbonyl)amino)-7- (oxazol-2-yl)-7-oxoheptyl)-4-(6-chloro-2-methoxypyridin-3-yl)-lH-imidazole-l-carboxylate (24C). LCMS (ESI) calc?d for C^IbsClNsOv [M+H]+: 604.2, found: 604.3 |