Structure of 6-Bromo-4-chloronicotinic acid
CAS No.: 1060808-92-5
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1060808-92-5 |
Formula : | C6H3BrClNO2 |
M.W : | 236.45 |
SMILES Code : | O=C(O)C1=CN=C(Br)C=C1Cl |
MDL No. : | MFCD13189219 |
InChI Key : | XWVFYJPQFMTKCQ-UHFFFAOYSA-N |
Pubchem ID : | 72212216 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 43.91 |
TPSA ? Topological Polar Surface Area: Calculated from |
50.19 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.36 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.03 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.2 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.25 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.08 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.58 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.92 |
Solubility | 0.283 mg/ml ; 0.0012 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.71 |
Solubility | 0.459 mg/ml ; 0.00194 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.87 |
Solubility | 0.316 mg/ml ; 0.00134 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.3 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.7 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
37.6% | With triethylamine; In dichloromethane; at 0 - 20℃; for 1h; | [00251j Step 4: (R)-4-Amino-3-fluoro-2-methylbutan-2-ol (2.82 g, 23.26 mmol) inDCM (25 mL) was added TEA (8.84 mL, 63.4 mmol) at 0 C. The acid chloride prepared above was dissolved in DCM (75 mL) and added dropwise at 0 C to the amine solution. The reaction mixture was stirred for 30 mm and allowed to warm to room temperature for 30 mm. The reaction mixture was diluted with DCM (150 mL) and washed with water and brine. The organic layer was dried over Na2504, filtered and concentrated to give(R)-6-bromo-4-chloro-N-(2-fluoro-3 -hydroxy-3 -methylbutyl)nicotinamide (2.7 g, 7.95mmol, 37.6% yield) as a brown oil. The residue was purified via columnchromatography (pet ether:EA, 15-20%). ?H NMR (400 MHz, DMSO-d6) oe 8.90 (t, J=5.6 Hz, 1H), 8.47 (s, 1H), 7.91 (s, 1H), 4.84 (s, 1H), 4.31 (ddd, J= 49.6, 8.4, 2.0 Hz, 1H),3.77 (ddd, J= 38.4, 14.8, 6.0 Hz, 1H), 3.69 (m, 1H), 1.17 (s, sH), 1.15 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In methanol; at 20℃; for 2h; | [00194j Step 2: To solution of 6-chloro-4-bromo-5-(trimethylsilyl)nicotinic acid (4 g,13 mmol) in MeOH (100 mL) and was added K2C03 (4 g, 29 mmol). The reactionmixture was stirred at rt for 2 h. The reaction mixture was slowly added to ice thenacidified with 10% H2504. The aqueous layer was extracted twice with EtOAc (50 mL).The separated organic layer was dried (Na2504) and concentrated to afford the crude0product 6-chloro-4-bromonicotinic acid (2.3 g, 75/0 yield). LCMS m/z 233.9 (M) ; HNMR (400 MHz, DMSO-d6) oe 14.05 (br s, 1H), 8.77 (s, 1H), 8.06 (s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With oxalyl dichloride; In dichloromethane; at 0 - 50℃; for 1h; | Br[00195j Step 3: A suspension of <strong>[1060808-92-5]6-bromo-4-chloronicotinic acid</strong> (5 g, 21.15 mmol) inDCM (75 mL) was cooled to 0 C. Oxalyl chloride (3.70 ml, 42.3 mmol) was added and 20 the reaction mixture was heated at 50 C for 1 h. The reaction mixture was cooled to rtand the excess oxalyl chloride and DCM was removed by distillation to obtain the acid chloride as a brown oil which was used directly in the next step. | |
With oxalyl dichloride; In dichloromethane; at 0 - 50℃; for 1h;Heating; | [00250j Step 3: A suspension of <strong>[1060808-92-5]6-bromo-4-chloronicotinic acid</strong> (5 g, 21.15 mmol) in DCM (75 mL) was cooled to 0 C. Oxalyl chloride (3.70 ml, 42.3 mmol) was added and the reaction mixture was heated at 50 C for 1 h. The reaction mixture was cooled toroom temperature and the excess oxalyl chloride and DCM was removed by distillation to obtain the acid chloride as a brown oil which was used directly in the next step. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In 1,4-dioxane; at 80℃; for 10h;Inert atmosphere; | To 6-bromo-4-chloro-pyridine-3-carboxylic acid (205 mg, 0.865 mmol), (3-fluoro-5-isobutoxy-phenyl)boronic acid (184 mg, 0.865 mmol), and palladium;triphenylphosphane (30.0 mg, 0.0260 mmol) in dioxane (4 mL) was added solution of potassium carbonate (1.73 mL of 2 M, 3.46 mmol) under an atmosphere of nitrogen and the reaction mixture was stirred at 80 C. for 10 h. The reaction mixture was concentrated under reduced pressure, partitioned between water (15 mL) and EtOAc (15 mL). The aqueous layer was acidified with HCl and washed with EtOAc (3×15 mL). The combined organic layers was washed with brine (1×25 mL), dried over sodium sulfate, filtered and concentrated under reduced pressure. The solid obtained was washed with hexanes to give 4-chloro-6-(3-fluoro-5-isobutoxy-phenyl)pyridine-3-carboxylic acid (232 mg, 83%) as a tan solid. ESI-MS m/z calc. 323.07245. found 324.1 (M+1)+. Retention time: 0.74 minutes. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With lithium hydroxide; In methanol; water; at 43℃; | To a solution of methyl 6-bromo-4-chloronicotinate (15 g, 59.89 mmol) in methanol (240 mL) was added lithium hydroxide (2.93 g, 119.77 mmol) in water (68 mL). The solution was heated to 43 C. overnight and subsequently cooled to room temperature. Aqueous hydrochloric acid (1M, 120 mL) was added and volatiles were removed in vacuo. The resulting slurry was filtered and washed with H2O to provide 6-bromo-4-chloronicotinic acid. ES/MS: 237.967 (M+H+). 1H NMR (400 MHz, DMSO-d6) delta 8.75 (s, 1H), 8.03 (s, 1H). | |
With water; lithium hydroxide; In methanol; at 43℃; | To a solution of methyl 6-bromo-4-chloronicotinate (15 g, 59.89 mmol) in methanol (240 mL) was added lithium hydroxide (2.93 g, 119.77 mmol) in water (68 mL). The solution was heated to 43 C. overnight and subsequently cooled to room temperature. Aqueous hydrochloric acid (1M, 120 mL) was added and volatiles were removed in vacuo. The resulting slurry was filtered and washed with H2O to provide 6-bromo-4-chloronicotinic acid. ES/MS: 238.0 (M+H+). 1H NMR (400 MHz, DMSO-d6) delta 8.75 (s, 1H), 8.03 (s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; at 20℃; | To a solution of <strong>[1060808-92-5]6-bromo-4-chloronicotinic acid</strong> (3 g, 12.69 mmol) in DMF (42 mL) was added HATU (6.27 g, 16.49 mmol), (R)-4-amino-3-fluoro-2-methylbutan-2-ol hydrochloride (2.4 g, 15.23 mmol), and N,N-Diisopropylethylamine (5.62 ml, 32.26 mmol). The resulting solution was stirred at room temperature overnight and subsequently diluted with ethyl acetate. The organic solution was washed with saturated aqueous lithium chloride (3 times), then dried over Na2SO4, and the concentrated. The residue was purified by silica gel chromatography (eluent: EtOAc/hexanes) to provide (R)-6-bromo-4-chloro-N-(2-fluoro-3-hydroxy-3-methylbutyl)nicotinamide. ES/MS: 341.089 (M+H+). 1H NMR (400 MHz, DMSO-d6) delta 8.88 (t, J=5.5 Hz, 1H), 8.41 (s, 1H), 8.01 (s, 1H), 4.82 (s, 1H), 4.28 (ddd, J=49.3, 9.4, 2.0 Hz, 1H), 3.84-3.63 (m, 1H), 3.40-3.22 (m, 1H), 1.13 (d, J=7.0 Hz, 6H). | |
With N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; at 20℃; | To a solution of <strong>[1060808-92-5]6-bromo-4-chloronicotinic acid</strong> (3 g, 12.69 mmol) in DMF (42 mL) was added HATU (6.27 g, 16.49 mmol), (R)-4-amino-3-fluoro-2-methylbutan-2-ol hydrochloride (2.4 g, 15.23 mmol), and N,N-Diisopropylethylamine (5.62 ml, 32.26 mmol). The resulting solution was stirred at room temperature overnight and subsequently diluted with ethyl acetate. The organic solution was washed with saturated aqueous lithium chloride (3 times), then dried over Na2SO4, and then concentrated. The residue was purified by silica gel chromatography (eluent: EtOAc/hexanes) to provide (R)-6-bromo-4-chloro-N-(2-fluoro-3-hydroxy-3-methylbutyl)nicotinamide. ES/MS: 341.1 (M+H+). 1H NMR (400 MHz, DMSO-d6) delta 8.88 (t, J=5.5 Hz, 1H), 8.41 (s, 1H), 8.01 (s, 1H), 4.82 (s, 1H), 4.28 (ddd, J=49.3, 9.4, 2.0 Hz, 1H), 3.84-3.63 (m, 1H), 3.40-3.22 (m, 1H), 1.13 (d, J=7.0 Hz, 6H). |
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