Structure of CX-5461
CAS No.: 1138549-36-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
CX-5461 is a potent oral rRNA synthesis inhibitor that inhibits RNA polymerase I-driven transcription of rRNA with IC50 values of 142, 113, and 54 nM in HCT-116, A375, and MIA PaCa-2 cells, respectively.
Synonyms: Pidnarulex
4.5
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Batch number can be found on the product's label following the word 'Batch'.
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Batch number can be found on the product's label following the word 'Batch'.
Search for reports by entering the product batch number.
Batch number can be found on the product's label following the word 'Batch'.
Search for reports by entering the product batch number.
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CAS No. : | 1138549-36-6 |
Formula : | C27H27N7O2S |
M.W : | 513.61 |
SMILES Code : | O=C(C1=C(SC2=CC=CC=C23)N3C4=C(C=CC(N5CCN(C)CCC5)=N4)C1=O)NCC6=NC=C(C)N=C6 |
Synonyms : |
Pidnarulex
|
MDL No. : | MFCD21609261 |
InChI Key : | XGPBJCHFROADCK-UHFFFAOYSA-N |
Pubchem ID : | 25257557 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
In Vitro:
Cell Line
|
Concentration | Treated Time | Description | References |
HCT116 BRCA2 knockout cells | 10^-8 M | 48 h | CX-5461 significantly induced more chromosomal abnormalities in BRCA2 knockout HCT116 cells | PMC5321743 |
U2OS cells | 10^-7 M | 24 h | CX-5461 robustly induced γ-H2AX and 53BP1 DNA damage foci in U2OS cells | PMC5321743 |
OVCAR3 | 12 nM | 48 h | To evaluate the growth inhibitory effect of CX-5461 on OVCAR3 cells, results showed that CX-5461 inhibited 50% of cell proliferation at 12 nM concentration. | PMC7251123 |
OVCAR8 | 10 nM and 100 nM | To evaluate the growth inhibitory effect of CX-5461 on HR-deficient OVCAR8 cells, results showed increased sensitivity to CX-5461 at 10 nM and 100 nM concentrations. | PMC7251123 | |
human pulmonary arterial smooth muscle cells | 2 μM | 24 h | CX-5461 induced cell cycle arrest at G1/S phase, reducing the number of cells in S phase, indicating its anti-proliferative effect. | PMC9328314 |
CHP-134 | 0.04 µM | 3 days | Determine the selective activity of CX-5461 in neuroblastoma cells | PMC8578635 |
IMR-5 | 0.05 µM | 48 h | Assess the apoptosis-inducing effect of CX-5461 in neuroblastoma cells | PMC8578635 |
HeLa cells | 2 µM | 2 h | To investigate the effect of CX-5461 on nucleolar H2BS14p in undamaged cells, results showed that phosphorylation of H2B was undetectable in the presence of the inhibitor. | PMC6068430 |
LS174t cells | 500 nM | 24 h | Significantly reduced rDNA transcription, decreased 45S pre-RNA expression | PMC9348601 |
HCT116 cells | 500 nM | 72 h | Significantly reduced cell viability, IC50 value of 0.05 µM | PMC9348601 |
DLD1 cells | 500 nM | 72 h | Significantly reduced cell viability, IC50 value of 0.49 µM | PMC9348601 |
HT29 cells | 500 nM | 72 h | Significantly reduced cell viability, IC50 value of 0.43 µM | PMC9348601 |
SW480 cells | 500 nM | 72 h | Significantly reduced cell viability, IC50 value of 0.55 µM | PMC9348601 |
OVCAR3 | 12 nM | 48 h | To evaluate the growth inhibitory effect of CX-5461 on OVCAR3 cells, results showed that CX-5461 at 12 nM concentration inhibited 50% of cell proliferation. | PMC7251123 |
OVCAR4 | 80 nM | 48 h | To evaluate the synergistic effect of CX-5461 with HR gene siRNAs, results showed that CX-5461 and HR gene siRNAs exhibited strong synergistic inhibition in OVCAR4 cells. | PMC7251123 |
OVCAR8 | 10 nM and 100 nM | To evaluate the growth inhibitory effect of CX-5461 on HR-deficient OVCAR8 cells, results showed that HR-deficient cells exhibited increased sensitivity to CX-5461 at 10 nM and 100 nM concentrations. | PMC7251123 | |
BCPAP cells | 100 nM | 24 or 48 h | CX-5461 treatment significantly up-regulated the expression levels of PAX8, DIO1, THRA, THRB, FOXE1, and TSHR in BCPAP cells. | PMC10468137 |
K1 cells | 100 nM | 24 or 48 h | CX-5461 treatment significantly up-regulated the expression levels of PAX8, DIO1, THRA, THRB, FOXE1, and TSHR in K1 cells. | PMC10468137 |
SW1736 cells | 100 nM | 24 or 48 h | CX-5461 treatment significantly up-regulated the expression levels of PAX8, DIO1, THRA, THRB, FOXE1, and TSHR in SW1736 cells. | PMC10468137 |
In Vivo:
Species
|
Animal Model
|
Administration | Dosage | Frequency | Description | References |
mice | BRCA2 knockout tumour model | oral | 50 mg/kg | once every three days for 10–20 days | CX-5461 substantially and significantly inhibited the growth rate of tumours formed from BRCA2 knockout HCT116 cells and greatly extended the survival time of the mice | PMC5321743 |
Mice | HGSOC-PDX model | Oral gavage (CX-5461) and intraperitoneal injection (olaparib) | 40 mg/kg | CX-5461 twice a week for 3 weeks; olaparib once daily for 3 weeks | To evaluate the therapeutic efficacy of CX-5461 in combination with PARPi in the HGSOC-PDX model, results showed that the combination of CX-5461 and olaparib significantly prolonged survival and resulted in significant tumor volume reduction. | PMC7251123 |
Sprague-Dawley rats | monocrotaline (MCT) or Sugen/hypoxia (Su/H) induced pulmonary arterial hypertension model | oral | 12.5 mg/kg or 25 mg/kg | every 72 hours for 28 or 56 days | CX-5461 prevented the development of pulmonary arterial remodelling, perivascular inflammation, pulmonary hypertension, and improved survival. Moreover, CX-5461 partly reversed established pulmonary hypertension. | PMC9328314 |
mice | orthotopic patient-derived xenograft neuroblastoma mouse models | IP injection | 5 mg/kg | once daily for 5 days | Evaluate the anti-tumor activity of CX-5461 in vivo | PMC8578635 |
Mice | CRC xenograft model | Oral | 50 mg/kg | Once daily until tumor volume reached 600 mm³ | Significantly inhibited tumor growth, reduced Ki67-positive cells, increased necrotic area | PMC9348601 |
Mice | HGSOC-PDX model | Oral gavage and intraperitoneal injection | 40 mg/kg | CX-5461 twice a week, olaparib once daily, for 3 weeks | To evaluate the combined therapeutic effect of CX-5461 and PARPi in the HGSOC-PDX model, results showed that the combination of CX-5461 and olaparib significantly prolonged survival and resulted in significant tumor volume reduction. | PMC7251123 |
Mice | BCPAP, OCM1, and 611BTPC subcutaneous tumor models | Oral | 50 mg/kg | Twice a week, until tumors reached 600 mm³ | CX-5461 effectively inhibited tumor growth in BCPAP, OCM1, and 611BTPC subcutaneous tumor models and showed no or mild loss in the mice tested. | PMC10468137 |
Clinical Trial:
NCT Number | Conditions | Phases | Recruitment | Completion Date | Locations |
NCT04890613 | Advanced Solid Tumor | PHASE1 | RECRUITING | 2025-06-25 | University of California, Los ... More >>Angeles, Santa Monica, California, 90404, United States|H. Lee Moffitt Cancer Center and Research Institute Hospital, Tampa, Florida, 33612-9497, United States|Dana Farber Cancer Institute, Boston, Massachusetts, 02215, United States|Memorial Sloan-Kettering Cancer Center, New York, New York, 10065, United States|Ohio State University-James Cancer Hospital and Solove Research Institute, Columbus, Ohio, 43202, United States|UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, 15232, United States|Princess Margaret Cancer Centre, Toronto, Ontario, M5G 1X6, Canada|Centre hospitalier de l'Université de Montréal (CHUM), Montréal, Quebec, H2X 0C2, Canada Less << |
Bio Calculators | ||||
Preparing Stock Solutions | ![]() |
1mg | 5mg | 10mg |
1 mM 5 mM 10 mM |
1.95mL 0.39mL 0.19mL |
9.74mL 1.95mL 0.97mL |
19.47mL 3.89mL 1.95mL |
|
Dissolving Methods |
The prepared working fluid is recommended to be prepared now and used up as soon as possible in a short period of time. The percentage shown in front of the following solvent refers to the volume ratio of the solvent in the final solution; If precipitation or precipitation occurs in the preparation process, it can be assisted by heating and/or ultrasound.
|
Tags: CX-5461 | CX5461 | CX 5461 | DNA/RNA Synthesis | 1138549-36-6
Precautionary Statements-General | |
Code | Phrase |
P101 | If medical advice is needed,have product container or label at hand. |
P102 | Keep out of reach of children. |
P103 | Read label before use |
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Code | Phrase |
P201 | Obtain special instructions before use. |
P202 | Do not handle until all safety precautions have been read and understood. |
P210 | Keep away from heat/sparks/open flames/hot surfaces. - No smoking. |
P211 | Do not spray on an open flame or other ignition source. |
P220 | Keep/Store away from clothing/combustible materials. |
P221 | Take any precaution to avoid mixing with combustibles |
P222 | Do not allow contact with air. |
P223 | Keep away from any possible contact with water, because of violent reaction and possible flash fire. |
P230 | Keep wetted |
P231 | Handle under inert gas. |
P232 | Protect from moisture. |
P233 | Keep container tightly closed. |
P234 | Keep only in original container. |
P235 | Keep cool |
P240 | Ground/bond container and receiving equipment. |
P241 | Use explosion-proof electrical/ventilating/lighting/equipment. |
P242 | Use only non-sparking tools. |
P243 | Take precautionary measures against static discharge. |
P244 | Keep reduction valves free from grease and oil. |
P250 | Do not subject to grinding/shock/friction. |
P251 | Pressurized container: Do not pierce or burn, even after use. |
P260 | Do not breathe dust/fume/gas/mist/vapours/spray. |
P261 | Avoid breathing dust/fume/gas/mist/vapours/spray. |
P262 | Do not get in eyes, on skin, or on clothing. |
P263 | Avoid contact during pregnancy/while nursing. |
P264 | Wash hands thoroughly after handling. |
P265 | Wash skin thouroughly after handling. |
P270 | Do not eat, drink or smoke when using this product. |
P271 | Use only outdoors or in a well-ventilated area. |
P272 | Contaminated work clothing should not be allowed out of the workplace. |
P273 | Avoid release to the environment. |
P280 | Wear protective gloves/protective clothing/eye protection/face protection. |
P281 | Use personal protective equipment as required. |
P282 | Wear cold insulating gloves/face shield/eye protection. |
P283 | Wear fire/flame resistant/retardant clothing. |
P284 | Wear respiratory protection. |
P285 | In case of inadequate ventilation wear respiratory protection. |
P231 + P232 | Handle under inert gas. Protect from moisture. |
P235 + P410 | Keep cool. Protect from sunlight. |
Response | |
Code | Phrase |
P301 | IF SWALLOWED: |
P304 | IF INHALED: |
P305 | IF IN EYES: |
P306 | IF ON CLOTHING: |
P307 | IF exposed: |
P308 | IF exposed or concerned: |
P309 | IF exposed or if you feel unwell: |
P310 | Immediately call a POISON CENTER or doctor/physician. |
P311 | Call a POISON CENTER or doctor/physician. |
P312 | Call a POISON CENTER or doctor/physician if you feel unwell. |
P313 | Get medical advice/attention. |
P314 | Get medical advice/attention if you feel unwell. |
P315 | Get immediate medical advice/attention. |
P320 | |
P302 + P352 | IF ON SKIN: wash with plenty of soap and water. |
P321 | |
P322 | |
P330 | Rinse mouth. |
P331 | Do NOT induce vomiting. |
P332 | IF SKIN irritation occurs: |
P333 | If skin irritation or rash occurs: |
P334 | Immerse in cool water/wrap n wet bandages. |
P335 | Brush off loose particles from skin. |
P336 | Thaw frosted parts with lukewarm water. Do not rub affected area. |
P337 | If eye irritation persists: |
P338 | Remove contact lenses, if present and easy to do. Continue rinsing. |
P340 | Remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P341 | If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P342 | If experiencing respiratory symptoms: |
P350 | Gently wash with plenty of soap and water. |
P351 | Rinse cautiously with water for several minutes. |
P352 | Wash with plenty of soap and water. |
P353 | Rinse skin with water/shower. |
P360 | Rinse immediately contaminated clothing and skin with plenty of water before removing clothes. |
P361 | Remove/Take off immediately all contaminated clothing. |
P362 | Take off contaminated clothing and wash before reuse. |
P363 | Wash contaminated clothing before reuse. |
P370 | In case of fire: |
P371 | In case of major fire and large quantities: |
P372 | Explosion risk in case of fire. |
P373 | DO NOT fight fire when fire reaches explosives. |
P374 | Fight fire with normal precautions from a reasonable distance. |
P376 | Stop leak if safe to do so. Oxidising gases (section 2.4) 1 |
P377 | Leaking gas fire: Do not extinguish, unless leak can be stopped safely. |
P378 | |
P380 | Evacuate area. |
P381 | Eliminate all ignition sources if safe to do so. |
P390 | Absorb spillage to prevent material damage. |
P391 | Collect spillage. Hazardous to the aquatic environment |
P301 + P310 | IF SWALLOWED: Immediately call a POISON CENTER or doctor/physician. |
P301 + P312 | IF SWALLOWED: call a POISON CENTER or doctor/physician IF you feel unwell. |
P301 + P330 + P331 | IF SWALLOWED: Rinse mouth. Do NOT induce vomiting. |
P302 + P334 | IF ON SKIN: Immerse in cool water/wrap in wet bandages. |
P302 + P350 | IF ON SKIN: Gently wash with plenty of soap and water. |
P303 + P361 + P353 | IF ON SKIN (or hair): Remove/Take off Immediately all contaminated clothing. Rinse SKIN with water/shower. |
P304 + P312 | IF INHALED: Call a POISON CENTER or doctor/physician if you feel unwell. |
P304 + P340 | IF INHALED: Remove victim to fresh air and Keep at rest in a position comfortable for breathing. |
P304 + P341 | IF INHALED: If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P305 + P351 + P338 | IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses, if present and easy to do. Continue rinsing. |
P306 + P360 | IF ON CLOTHING: Rinse Immediately contaminated CLOTHING and SKIN with plenty of water before removing clothes. |
P307 + P311 | IF exposed: call a POISON CENTER or doctor/physician. |
P308 + P313 | IF exposed or concerned: Get medical advice/attention. |
P309 + P311 | IF exposed or if you feel unwell: call a POISON CENTER or doctor/physician. |
P332 + P313 | IF SKIN irritation occurs: Get medical advice/attention. |
P333 + P313 | IF SKIN irritation or rash occurs: Get medical advice/attention. |
P335 + P334 | Brush off loose particles from skin. Immerse in cool water/wrap in wet bandages. |
P337 + P313 | IF eye irritation persists: Get medical advice/attention. |
P342 + P311 | IF experiencing respiratory symptoms: call a POISON CENTER or doctor/physician. |
P370 + P376 | In case of fire: Stop leak if safe to Do so. |
P370 + P378 | In case of fire: |
P370 + P380 | In case of fire: Evacuate area. |
P370 + P380 + P375 | In case of fire: Evacuate area. Fight fire remotely due to the risk of explosion. |
P371 + P380 + P375 | In case of major fire and large quantities: Evacuate area. Fight fire remotely due to the risk of explosion. |
Storage | |
Code | Phrase |
P401 | |
P402 | Store in a dry place. |
P403 | Store in a well-ventilated place. |
P404 | Store in a closed container. |
P405 | Store locked up. |
P406 | Store in corrosive resistant/ container with a resistant inner liner. |
P407 | Maintain air gap between stacks/pallets. |
P410 | Protect from sunlight. |
P411 | |
P412 | Do not expose to temperatures exceeding 50 oC/ 122 oF. |
P413 | |
P420 | Store away from other materials. |
P422 | |
P402 + P404 | Store in a dry place. Store in a closed container. |
P403 + P233 | Store in a well-ventilated place. Keep container tightly closed. |
P403 + P235 | Store in a well-ventilated place. Keep cool. |
P410 + P403 | Protect from sunlight. Store in a well-ventilated place. |
P410 + P412 | Protect from sunlight. Do not expose to temperatures exceeding 50 oC/122oF. |
P411 + P235 | Keep cool. |
Disposal | |
Code | Phrase |
P501 | Dispose of contents/container to ... |
P502 | Refer to manufacturer/supplier for information on recovery/recycling |
Physical hazards | |
Code | Phrase |
H200 | Unstable explosive |
H201 | Explosive; mass explosion hazard |
H202 | Explosive; severe projection hazard |
H203 | Explosive; fire, blast or projection hazard |
H204 | Fire or projection hazard |
H205 | May mass explode in fire |
H220 | Extremely flammable gas |
H221 | Flammable gas |
H222 | Extremely flammable aerosol |
H223 | Flammable aerosol |
H224 | Extremely flammable liquid and vapour |
H225 | Highly flammable liquid and vapour |
H226 | Flammable liquid and vapour |
H227 | Combustible liquid |
H228 | Flammable solid |
H229 | Pressurized container: may burst if heated |
H230 | May react explosively even in the absence of air |
H231 | May react explosively even in the absence of air at elevated pressure and/or temperature |
H240 | Heating may cause an explosion |
H241 | Heating may cause a fire or explosion |
H242 | Heating may cause a fire |
H250 | Catches fire spontaneously if exposed to air |
H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
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