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CAS No. : | 1211520-71-6 | MDL No. : | MFCD18255776 |
Formula : | C6H5Br2NO | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | DJDWOEGZGVBCMN-UHFFFAOYSA-N |
M.W : | 266.92 | Pubchem ID : | 74891127 |
Synonyms : |
|
Num. heavy atoms : | 10 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.17 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 2.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 46.13 |
TPSA : | 22.12 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.12 cm/s |
Log Po/w (iLOGP) : | 2.32 |
Log Po/w (XLOGP3) : | 2.54 |
Log Po/w (WLOGP) : | 2.62 |
Log Po/w (MLOGP) : | 1.67 |
Log Po/w (SILICOS-IT) : | 2.71 |
Consensus Log Po/w : | 2.37 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -3.47 |
Solubility : | 0.0898 mg/ml ; 0.000336 mol/l |
Class : | Soluble |
Log S (Ali) : | -2.65 |
Solubility : | 0.596 mg/ml ; 0.00223 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -3.86 |
Solubility : | 0.037 mg/ml ; 0.000139 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 0.0 |
Synthetic accessibility : | 1.97 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1.1: N-Bromosuccinimide / acetonitrile / 1 h / 0 - 20 °C 2.1: sodium nitrite; hydrogen bromide / water / 0.5 h / -10 °C 2.2: 2 h |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | Step 4: 2,5-dibromo-4-methoxypyridine 5-Bromo-4-methoxy-2-aminopyridine (20.3 g, 100 mmol) was dissolved in 40% HBr (60 mL) and water (40 mL) at -10C under stirring, and then a solution of NaNO2 (17.3 g, 250 mmol) in water (25 mL) was added. The mixture was stirred at low temperature for 30 minutes. Liquid bromine (48.0 g, 300 mmol) was added, and stirring was continued for 2 hours. Concentrated NaOH was added to adjust the pH value to greater than 12, and then the resultant was extracted by ethyl acetate. The extract was dried, concentrated, and purified by silica gel column chromatography to give 2,5-dibromo-4-methoxypyridine (13.8 g, 52% yield). MS m/z [ESI]: 267.9 [M+1]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
42% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate In 1,4-dioxane; water at 100℃; Inert atmosphere; | Step 5: tert-butyl 4-(5-bromo-4-methoxypyridin-2-yl)-5,6-dihydropyridin-1(2H)-carboxylate Step 5: tert-butyl 4-(5-bromo-4-methoxypyridin-2-yl)-5,6-dihydropyridin-1(2H)-carboxylate Tert-butyl 4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5,6-dihydropyridin-1(2H)-carboxylate (3.09g, 10 mol), 2,5-dibromo-4-methoxypyridine (2.67 g, 10 mmol), Pd(PPh3)4 (578 mg, 0.5 mmol), and K2CO3 (3.34 g, 24 mmol) were added to 1,4-dioxane (50 mL) and water (10 mL) and purged with nitrogen. The resultant was stirred at 100°C overnight. After the resultant was cooled, it was purified by silica gel column chromatography to give tert-butyl 4-(5-bromo-4-methoxypyridin-2-yl)-5,6-dihydropyridin-1(2H)-carboxylate (1.55 g, 42% yield). MS m/z [ESI]: 369.1 [M+1]. 1H-NMR (400 MHz, CDCl3):δ= 8.49(s, 1H), 7.26 (s, 1H), 6.58 (s, 1H), 4.13 (t, 2H), 3.97 (s, 3H), 2.62 (d, 2H), 1.49 (s, 9H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35% | With potassium carbonate In N,N-dimethyl-formamide at 40℃; for 4h; | To a mixture of 2,5-dibromopyridin-4-ol 36 (2.00 g, 7.91 mmol) and K2CO3 (2.19 g, 15.8 mmol) in DMF (25 ml), iodomethane (1.48 g, 8.70 mmol) was added. The mixture was stirred at 40°C for 4 h before it was diluted with EA and washed with water followed by brine. The organic extract was dried over MgSO4, filtered and concentrated. The crude product was purified by CC on silica gel eluting with heptane:EA4:1 to give 2,5-dibromo-4-methoxypyridine 37 (730 mg, 35%) as a pale yellow oil |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; triphenylphosphine In 1,4-dioxane; water at 90℃; for 3h; Inert atmosphere; regioselective reaction; | To a solution of 2,5-dibromo-4-methoxypyridine 37 (730 mg, 2.73 mmol) in dioxane (10 mL) and 2 M aq. K2CO3 (5 mL), 2,4,6-trivinyl-1,3,5,2,4,6-trioxatriborinane pyridine complex [1] (242 mg, 0.96 mmol) followed by PPh3 (84 mg, 0.52 mmol) was added. The mixture was degassed and put under N2 atmosphere before Pd(PPh3)4 (59 mg, 51 mol) was added. The mixture was stirred at 90°C for 3 h before it was cooled to rt, diluted with water and extracted twice with EA. The combined organic extracts were dried over MgSO4, filtered and concentrated. The crude product was purified by CC on silica gel eluting with hepatene:EA 3:1 to give 5-bromo-3-methoxy-2-vinylpyridine 38 (410 mg, 70%) as a pale yellow oil |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1.1: lithium diisopropyl amide / tetrahydrofuran / 0.17 h / -78 °C 1.2: 0.5 h 2.1: copper(l) iodide / methanol / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With copper(l) iodide In methanol Reflux; | 2,5-Dibromo-4-methoxypyridine (9). A mixture containing 8a (3.31 g, 9.12 mmol), copper iodide (0.17 g, 0.91 mmol), and sodium methoxide (0.23 g sodium, 10.04 mmol in 50 mL anhydrous methanol) was heated at reflux overnight. Saturated sodium bicarbonate was added and the mixture was filtered through a pad of Celite. The pad was washed with dichloromethane and then the aqueous filtrate was extracted with dichloromethane. The combined extracts were washed with brine and dried over anhydrous magnesium sulfate. Concentration and purification by radial PLC (silica gel, EtOAc/hexanes, 2:98) yielded 2.07 g (85%) of 9 as a white solid, mp 124-125 °C; 1H NMR (300 MHz, CDCl3) δ 3.96 (s, 3H), 6.99 (s, 1H), 8.33 (s, 1H); 13C NMR (75 MHz, CDCl3) δ 56.8, 110.4, 111.8, 1419, 151.8, 163.1; FTIR (film) 847, 921, 1014, 1100, 1153, 1269, 1295, 1337,1477, 1540, 1564, 1698, 1775, 2340, 2361, 2850, 2923, 2990, 3080 cm-1; HRMS (FAB) calcd for C6H5Br2NO(M+1) 265.8816; found 265.8835. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1.1: n-butyllithium / tetrahydrofuran / 0.5 h / -78 °C / Inert atmosphere 1.2: 0.5 h / Inert atmosphere 2.1: sodium tetrahydroborate; ethanol / dichloromethane / 0.5 h / 20 °C 3.1: sodium iodide; chloro-trimethyl-silane / acetonitrile / 1 h / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1.1: n-butyllithium; 2,2,6,6-tetramethyl-piperidine / hexane; tetrahydrofuran / 1 h / -78 °C 1.2: 0.5 h 2.1: sodium tetrahydroborate; ethanol / dichloromethane / 0.17 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1.1: n-butyllithium / tetrahydrofuran / 0.5 h / -78 °C / Inert atmosphere 1.2: 0.5 h / Inert atmosphere 2.1: sodium tetrahydroborate; ethanol / dichloromethane / 0.5 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
47% | With n-butyllithium In tetrahydrofuran; hexane at -78℃; for 0.5h; Inert atmosphere; | 2-Bromo-4-methoxypyridine-5-carboxaldehyde (18). Method A. To a mixture containing 9 (0.65 g, 2.44mmol) and ethyl formate (0.2 mL, 2.5 mmol) in 3 mL of THF at -78 °C was added n-BuLi (1.10 mL, 2.44 mmol, 2.22M in hexanes), and the mixture was stirred under nitrogen for 30 minutes. Saturated sodium bicarbonate was added and mixture was extracted with dichloromethane. The combined extracts were dried over anhydrous magnesium sulfate and concentrated. Purification by radial PLC (silica gel, EtOAc/hexanes, 5:95,10:90) gave 0.249 g (47%) of 18 as a yellow solid, mp 112-114 °C; 1H NMR (300 MHz, CDCl3) δ 4.01 (s, 3H), 7.14 (s, 1H), 8.63 (s, 1H), 10.38 (s, 1H); 13C NMR (75 MHz, CDCl3) δ 56.6, 111.6, 120.3, 149.2, 151.1, 167.2, 188.0; FTIR (film) 876, 1018, 1079, 1258, 1287, 1362, 1401, 1432, 1474, 1580, 1694, 2855, 2926, 2954, 3103, 3360cm-1; HRMS (FAB) calcd for C7H6BrNO2 (M+1) 215.9660; found 215.9646. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69% | Stage #1: 2,5-dibromo-4-methoxypyridine With isopropylmagnesium chloride In tetrahydrofuran at 20℃; for 1h; Stage #2: 2-chloro-3-quinoline carboxaldehyde In tetrahydrofuran at 20℃; Inert atmosphere; | (6-Bromo-4-methoxypyridin-3-yl)-(2-chloroquinolin-3-yl)methanol (19). To a solution of 9 (0.752 g, 2.82mmol) in THF (5.0 mL) was added isopropylmagnesium chloride (1.70 mL, 3.40 mmol, 2M in THF). The mixture was stirred at room temperature for one hour. A solution of 2-chloroquinoline-3-carboxaldehyde (0.557 g,2.91 mmol) in THF (10 mL) was added dropwise, and stirring was continued at room temperature overnight under nitrogen. Saturated sodium bicarbonate was added and the mixture was extracted with dichloromethane. The combined extracts were dried over anhydrous magnesium sulfate and concentrated. Purification by radial PLC (silica gel, EtOAc/hexanes, 5:95) yielded 0.739 g (69%) of 19 as a yellow solid, mp 182-184 °C; 1H NMR (400 MHz, CDCl3) δ 3.49-3.50 (d, J 4.0 Hz, 1H), 3.85 (s, 3H), 6.45-6.46 (d, J 4.0 Hz, 1H),7.56-7.59 (t, J 7.6, 7.2 Hz, 1H), 7.72-7.76 (t, J 8.0, 6.8 Hz, 1H), 7.81-7.83 (d, J 8.0Hz, 1H), 8.00-8.02 (d, J 8.0 Hz,1H), 8.12 (s, 1H), 8.26 (s, 1H); 13C NMR (100 MHz, CDCl3) δ 56.3, 66.3, 110.5, 125.8, 127.3, 127.6, 128.0, 128.3,130.9, 133.4, 137.3, 143.3, 147.3, 149.0, 149.5, 164.1; FTIR (film) 736, 754, 781, 876, 1024, 1083, 1138, 1234,1267, 1324, 1399, 1434, 1486, 1563, 1584, 1710, 2847, 2939, 3063, 3271 cm-1; HRMS (FAB) calcd forC16H12BrClN2O2 (M+1) 378.9849; found 378.9852. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | Stage #1: 2,5-dibromo-4-methoxypyridine With n-butyllithium; diisopropylamine In tetrahydrofuran; hexane at -78℃; for 0.0833333h; Stage #2: N,N-dimethyl-formamide In tetrahydrofuran; hexane for 0.5h; Stage #3: With methanol; sodium tetrahydroborate In tetrahydrofuran; hexane at 20℃; for 0.25h; | (2,5-Dibromo-4-methoxypyridin-3-yl)methanol (10). To a solution of diisopropylamine (0.24 mL, 1.71 mmol)in THF (5 mL) at -20 °C was added n-BuLi (0.73 mL, 1.72 mmol, 2.36 M in hexanes). The mixture was stirred for one hour under nitrogen and then cooled to -78 °C. A solution of 9 (0.376 g, 1.40 mmol) in THF (5 mL) was added dropwise and the mixture was stirred for 5 minutes. DMF (0.35 mL, 4.52 mmol) was added and stirring was continued for 30 minutes. Methanol (5 mL) and NaBH4 (0.2 g, 5.29 mmol) were added. The cooling bath was removed, stirring was continued at room temperature for 15 minutes, and the mixture was extracted with dichloromethane. The combined extracts were washed with saturated sodium bicarbonate and dried over anhydrous magnesium sulfate. Concentration and purification by radial PLC (silica gel, EtOAc/hexanes, 5:95,10:90) yielded 0.293 g (70%) of 10 as a yellow solid, mp 94-96 °C; 1H NMR (400 MHz, CDCl3) δ 2.24-2.27 (t, 1H,J 6.8, 6.4 Hz), 4.04 (s, 3H), 4.83-4.85 (d, 2H, J 6.4 Hz), 8.43 (s, 1H); 13C NMR (100 MHz, CDCl3) δ 59.7, 62.9,115.6, 132.6, 144.1, 152.5, 164.3; FTIR (film) 833, 1007, 1149, 1262, 1362, 1409, 1458, 1550, 1691, 1819, 2296,2390, 2850, 2944, 3385 cm-1; HRMS (FAB) calcd for C7H7Br2NO2 (M+1) 296.8922; found 296.8906. Structure was confirmed by X-ray crystallography. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | Stage #1: 2,5-dibromo-4-methoxypyridine With 2,2,6,6-tetramethyl-piperidine; n-butyllithium In tetrahydrofuran; hexane at -78℃; for 1h; Stage #2: N,N-dimethyl-formamide In tetrahydrofuran; hexane for 0.5h; | 2,6-Dibromo-4-methoxypyridine-3-carboxaldehyde (11). To a solution of 2,2,6,6-tetramethylpiperidine (0.35 mL, 2.07 mmol) in THF (1 mL) at -20 °C was added n-BuLi (1.04 mL, 2.08 mmol, 2.0 M in hexanes). The mixture was stirred for 30 minutes under argon and then cooled to -78 °C. A solution of 9 (0.46 g, 1.72 mmol) in THF (2mL) was added dropwise and stirring was continued for one hour. DMF (0.35 mL, 4.52 mmol) was added dropwise and the mixture was stirred for 30 minutes. Saturated sodium bicarbonate was added, and the mixture was extracted with ethyl acetate. The combined extracts were washed with brine and dried overanhydrous magnesium sulfate. Concentration and purification by radial PLC (silica gel, EtOAc/hexanes, 10:90)yielded 0.36 g (70%) of 11 as a yellow solid, mp 118-120 °C; 1H NMR (300 MHz, CDCl3) δ 3.99 (s, 3H), 7.12 (s,1H), 10.27 (s, 1H); 13C NMR (75 MHz, CDCl3) δ 57.3, 111.8, 119.6, 143.8, 145.6, 167.7, 188.7; FTIR (film) 896,1096, 1422, 1560, 1702, 2306, 2685, 2987, 3054 cm-1; HRMS (FAB) calcd for C7H5Br2NO2 (M+1) 294.8765;found 294.8737. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
18% | Stage #1: 2,5-dibromo-4-methoxypyridine With n-butyllithium In tetrahydrofuran; hexane at -78℃; for 0.0833333h; Inert atmosphere; Stage #2: N,N-dimethyl-formamide In tetrahydrofuran; hexane for 0.5h; Inert atmosphere; | Method B. To a solution of 9 (56 mg, 0.21 mmol) in 1 mL of THF at -78 °C under nitrogen was added n-BuLi (0.1 mL, 0.23 mmol, 2.34M in hexanes), and the mixture was stirred for 5 minutes. DMF (0.07 mL, 0.84 mmol) was added and stirring was continued for 30 minutes. Saturated sodium bicarbonate was added and the mixture was extracted with dichloromethane. The combined extracts were dried over anhydrous magnesium sulfate, and concentrated. Purification by radial PLC (silica gel, EtOAc/hexanes, 10:90) gave 8 mg (18%) of 18as a yellow solid. The 1H NMR was consistent with compound 18 made previously using method A above. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
39% | Stage #1: 2,5-dibromo-4-methoxypyridine With n-butyllithium In tetrahydrofuran at -78℃; for 0.5h; Inert atmosphere; Stage #2: N,N-dimethyl-formamide In tetrahydrofuran for 0.5h; Inert atmosphere; | Method B. To a solution of 9 (0.356 g, 1.33 mmol) in 3 mL THF at -78 oC was added n-BuLi (0.63 mL, 1.47 mmol) and the mixture was stirred under nitrogen for 30 minutes. DMF (0.40 mL, 5.17 mmol) was added and the mixture was stirred for 30 minutes. Saturated sodium bicarbonate was added and the mixture was extracted with dichloromethane. The combined extracts were dried over anhydrous magnesium sulfate and concentrated. Purification by radial PLC (silica gel, EtOAc/hexane, 10:90) gave 0.113 g (39%) of 3 as a white solid. The 1H NMR spectrum was identical to that obtained for 3 from method A above. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
12% | With hydrazine hydrate monohydrate at 80℃; for 16h; | S155.1 Step 1: Synthesis of 5-bromo-2-hydrazinyl-4-methoxypyridine [0770] The solution of 2,5-dibromo-4-methoxypyridine (500.0 mg, 2.24 mmol) in NH2NH2.H2O (50.0 mL, 80%) was stirred at 80 °C for 16 h. After the reaction was completed, the resulting mixture was concentrated under reduced pressure. The residue was purified by reverse phase flash chromatography with CH3CN/H2O (1/4, v/v) to afford 5-bromo-2-hydrazinyl-4-methoxypyridine (60.0 mg, 12%) as a yellow solid. LCMS (ESI, m/z): [M+H]+ =218.0 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: hydrazine hydrate monohydrate / 16 h / 80 °C 2: 16 h / 100 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: hydrazine hydrate monohydrate / 16 h / 80 °C 2: 16 h / 100 °C 3: potassium carbonate; palladium (II) [1,1'-bis(diphenylphosphanyl)ferrocene] dichloride / 1,4-dioxane; lithium hydroxide monohydrate / 16 h / 80 °C / Inert atmosphere |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 4 steps 1: hydrazine hydrate monohydrate / 16 h / 80 °C 2: 16 h / 100 °C 3: potassium carbonate; palladium (II) [1,1'-bis(diphenylphosphanyl)ferrocene] dichloride / 1,4-dioxane; lithium hydroxide monohydrate / 16 h / 80 °C / Inert atmosphere 4: Cs2CO3; [(2-di-cyclohexylphosphino-3,6-dimethoxy-2′,4′,6′- triisopropyl-1,1′-biphenyl)-2-(2′-amino-1,1′-biphenyl)]palladium(II) methanesulfonate methanesulfonate; dicyclohexyl(2′,4′,6′-tri-isopropyl-3,6-dimethoxy-[1,1′-biphenyl]-2-yl)phosphane / 1,4-dioxane / 16 h / 100 °C / Inert atmosphere |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 5 steps 1.1: hydrazine hydrate monohydrate / 16 h / 80 °C 2.1: 16 h / 100 °C 3.1: potassium carbonate; palladium (II) [1,1'-bis(diphenylphosphanyl)ferrocene] dichloride / 1,4-dioxane; lithium hydroxide monohydrate / 16 h / 80 °C / Inert atmosphere 4.1: Cs2CO3; [(2-di-cyclohexylphosphino-3,6-dimethoxy-2′,4′,6′- triisopropyl-1,1′-biphenyl)-2-(2′-amino-1,1′-biphenyl)]palladium(II) methanesulfonate methanesulfonate; dicyclohexyl(2′,4′,6′-tri-isopropyl-3,6-dimethoxy-[1,1′-biphenyl]-2-yl)phosphane / 1,4-dioxane / 16 h / 100 °C / Inert atmosphere 5.1: trifluoroacetic acid / dichloromethane / 2 h / 20 °C 5.2: 16 h / 20 °C |
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