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CAS No. : | 6974-32-9 | MDL No. : | MFCD00005357 |
Formula : | C28H24O9 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | GCZABPLTDYVJMP-CBUXHAPBSA-N |
M.W : | 504.48 | Pubchem ID : | 81455 |
Synonyms : |
|
Num. heavy atoms : | 37 |
Num. arom. heavy atoms : | 18 |
Fraction Csp3 : | 0.21 |
Num. rotatable bonds : | 12 |
Num. H-bond acceptors : | 9.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 128.42 |
TPSA : | 114.43 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | Yes |
CYP2C9 inhibitor : | Yes |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | Yes |
Log Kp (skin permeation) : | -5.37 cm/s |
Log Po/w (iLOGP) : | 3.6 |
Log Po/w (XLOGP3) : | 5.65 |
Log Po/w (WLOGP) : | 3.58 |
Log Po/w (MLOGP) : | 3.34 |
Log Po/w (SILICOS-IT) : | 3.42 |
Consensus Log Po/w : | 3.92 |
Lipinski : | 1.0 |
Ghose : | None |
Veber : | 1.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -6.1 |
Solubility : | 0.000405 mg/ml ; 0.000000803 mol/l |
Class : | Poorly soluble |
Log S (Ali) : | -7.82 |
Solubility : | 0.00000768 mg/ml ; 0.0000000152 mol/l |
Class : | Poorly soluble |
Log S (SILICOS-IT) : | -6.72 |
Solubility : | 0.0000952 mg/ml ; 0.000000189 mol/l |
Class : | Poorly soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 3.0 |
Synthetic accessibility : | 4.78 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65.1% | With hydrogenchloride In dichloromethane for 2.5 h; Cooling with ice | The synthesis of compound vi: The compound v (2.57mmol) was dissolved in 26 ml dry dichloromethane and dry HCl gas was slowly introduced into an ice-water bath for 2.5 hours. The solution was washed with 19.5ml ice water and the organic layer was separated. The organic layer was washed with saturated sodium bicarbonate until the water layer shows weak alkaline, and then washed with ice water until the water layer shows neutral, dried over anhydrous sodium sulfate for more than 4 hours, and then drawn off under a reduced pressure to obtain light yellow syrup. The syrup was recrystallized using the mixed solvent of hexane and dichloromethane, so as to obtain the white solid compound vi (65.1percent). 1H NMR(CDCl3) δppm: 7.36.similar.8.14 (m, 15H, OBz), 6.68 (d, J=4.4Hz, 1H, H-1), 5.59 (dd, 1H, H-3), 4.64.similar.4.80 (m, 4H, H-2, H-4 and H-5). M,p, 139.similar.140°C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | Stage #1: at 55℃; for 12.5 h; Industry scale Stage #2: With methanol; sodium methylate In dimethyl sulfoxide; acetonitrile at 22 - 23℃; for 3.75 h; |
Example 2 Coupling of Silyl 5-Azacytosine to Sugar and Deprotection A mixture of 2-[(trimethylsilyl)amino]-4-[(trimethylsilyl)oxy]-s-triazine (4.5 Kg), 1-O-acetyl-2,3,5-tri-O-benzoyl-β-D-ribofuranose (8.8 Kg), anhydrous MeCN (34.6 Kg) and TfOH (600 g) were heated at 55° C. for 12.5 hours. The reaction mixture was cooled to 45° C., DMSO (29 Kg) was added, and the MeCN was evaporated at an internal temperature of <50° C. under vacuum until about 54 L of the solution. The solution was cooled to 23° C. MeOH (13.9 Kg) was added followed by a solution of 30percent NaOMe in MeOH solution (2.5 Kg) that was pre-diluted with MeOH (7.0 Kg). The solution was stirred at 23° C. for 35 minutes. When the reaction was complete MeOH (90.4 Kg) was added and the resulting slurry was stirred at 22° C. for 3 hours and 10 minutes and was then filtered and washed three times with MeOH (7.0 Kg each). The cake was dried under vacuum at below 70° C. for 9 hours and 20 minutes to give 3.2 Kg of 98.89percent purity crude azacitidine (71percent yield based on 1-O-acetyl-2,3,5-tri-O-benzoyl-β-D-ribofuranose). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
titanium tetrachloride; In dichloromethane; | Example 8 Preparation of 2,3,5-Tri-O-Benzoyl-alpha,beta-D-Ribofuranosyl Chloride To a solution of 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (3.02 g, 5.98 mmol) in dry dichloromethane (100 ml) was added via cannula a dichloromethane solution of titanium tetrachloride (1.13 g, 5.98 mmol, 5.98 ml of a 1M solution). The solution was stirred at room temperature for 1. 5 hours under argon, then washed with water (3*100 ml), dried over anhydrous magnesium sulfate and evaporated in vacuo to give the title compounds as a colourless oil (2.9 g, 1 00%). 1H nmr indicated it to be an approximately 1:1 mixture of alpha:beta-anomers. 1H nmr (CDCl3) delta ppm; 8.06-7.81 (m, 6H), 7.55-7.09 (m, 12H), 6.57 (d, 0.5H, J= 4.5 Hz, H-1 of alpha-anomer), 6.20 (s, 0.5H, H-1 of beta-anomer), 6.07 (dd, 0.5H,,J 4.6 Hz), 5.91 (d, 0.5H, J=4.5 Hz), 5.78 (dd, 0.5H, J= 7.0, 2.9 Hz), 5.48 (dd, 0.5H, J=7.0, 4.6 Hz), 4.96-4.85 (m, 2H), 4.64-4.55 (m, 1H). | |
With titanium tetrachloride; In dichloromethane; at 23℃; for 2h;Inert atmosphere; | beta-1-O-Acetyl-2,3,5-O-benzoylribofuranose (11) (9, 5.91 g, 11.71 mmol) in CH2Cl2 (70mL) was added a solution of TiCl4 in CH2Cl2 (13mL, 1.0M).[12] The reaction was stirred at 23C for 2 hours, followed by quenching with deionized H2O (75 mL). The organic layer was separated, washed with deionized H2O (1 × 75 mL), dried over anhydrous MgSO4, and concentrated in vacuo. The crude material 1-chloro-2,3,5-tri-O-benzyl-alpha-D-arabinofuranose (11) was dissolved in CH3CN (20 mL) and used without further purification in the subsequent coupling step. | |
With hydrogenchloride; In dichloromethane; at 0 - 8℃; for 6.5h; | Hydrogen chloride was bubbled into an ice-cold solution of 1 (0.80g, 1.58mmol) in methylene chloride (15mL) for 1.5h. After being kept at 2-8C for 5h, the solution was concentrated under vacuum. To the obtained crude 1-chloro derivative 3 was added a mixture of CH2Cl2 (7mL), MeOH (7mL) and H2O (1.5mL). The mixture was stirred for 1h at ambient temperature and diluted with CHCl3 (150mL). The organic phase was washed with 5% NaHCO3 (50mL), dried over Na2SO4 and evaporated to dryness. The obtained residue was applied to a chromatographic column (silica gel, 80cm3) and eluted with a linear ethyl acetate gradient (20?30%, v/v, 400mL). The fractions containing the product were collected and evaporated to yield 0.61g of colorless oil. To this ice-cooled residue in a mixture of anhydrous pyridine (0.3mL) and CH2Cl2 (10mL) was added benzoyl chloride (0.3mL, 2.58mmol), the reaction mixture was stirred for 20h at room temperature. After standard workup the obtained residue was applied to a chromatographic column (silica gel, 100cm3) and eluted with CHCl3/hexane (5:1, v/v, 500mL). The fractions containing the products 5 and 6 were collected and evaporation to dryness under vacuum. 5: Yield 50%; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
163 mg | With poly(4,5-diphenyl-2-vinyloxazolium perchlorate); In acetonitrile; at 140℃; for 14h;Schlenk technique; Inert atmosphere; | A mixtureof thymine (0.33 mmol), BSA (85 muL, 0.35 mmol), and MeCN (3.0 mL) placed in a20-mL Schlenk tube with a cold finger was stirred under reflux (bath temp., 80 C) for 1h. After the mixture was cooled to rt, 1 (0.30 mmol) and 6 (15 mumol) were added andthe Young?s tap of the Schlenk tube was closed. The resulting mixture was stirred at140 C for 14 h. The reaction mass was cooled to 0 C and saturated NaHCO3solution (2 mL) was added to it, followed by EtOAc (2 mL). The organic phase wasseparated and the aqueous phase was back-extracted with EtOAc (4 x 4 mL). Thecombined organic layer was dried over Na2SO4 and evaporated to afford a crudematerial, which was purified by MPLC (size 60, MeOH:CH2Cl2 = 0:100 14:86). 3g(163 mg) was obtained in 95% yield. [alpha]D20 -85 (c 1.0, CHCl3) [lit.S6 [alpha]D22 -21.1 (c 1, CHCl3)]; 1H NMR (CDCl3) delta 1.59 (d, J = 1.1 Hz, 3H), 4.65 (dd, J = 12.3 and 3.5Hz, 1H), 4.68-4.72 (m, 1H), 4.89 (dd, J = 12.3 and 2.7 Hz, 1H), 5.75 (dd, J = 6.2 and6.2 Hz, 1H), 5.91 (dd, J = 6.2 and 3.8 Hz, 1H), 6.43 (d, J = 6.2 Hz, 1H), 7.16 (q, J = 1.1Hz, 1H), 7.31-7.44 (m, 4H), 7.46-7.65 (m, 5H), 7.91-8.02 (m, 4H), 8.12-8.16 (m, 2H),8.63 (br s, 1H); 13C NMR (CDCl3) delta 12.1, 63.9, 71.4, 73.3, 80.6, 86.8, 112.2, 128.3,128.5, 128.6, 128.9, 129.2, 129.6, 129.8, 129.9, 133.73, 133.78, 133.81, 134.8, 150.2,163.2, 165.3, 165.4, 166.0; HRMS (FAB) calcd for C31H26N2O9Na [M+Na]+ 593.1536,found 593.1546. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92.1% | With pyridine; at 40℃;Cooling with ice; | The synthesis of compound v: The compound iv (2.73mmol) was dissolved in 5ml dry pyridine, and the solution was slowly added dropwise with acetic anhydride (0.0276mol) in an ice water bath, then stirred for 30 minutes. Then, the ice water bath was removed, and the solution was stirred at a room temperature for 7 hours, and then heated up to 40C. This temperature was kept for an hour. The solution was added with 6.5g broken ice and then stirred until the broken ice was melted. The reaction solution was poured into 13 ml ice water and extracted with chloroform. The organic layer was washed sequentially with ice water, pre-cooled sulfuric acid (3mol/L) and saturated sodium bicarbonate until the water layer shows weak alkaline, then washed with ice water until the water layer shows neutral, dried over anhydrous sodium sulfate for more than 4 hours, and then drawn off under a reduced pressure, so as to obtain the light yellow syrup-like compound v (92.1%). 1H NMR(CDCl3) deltappm: 7.30?8.10 (m, 15H, OBz), 6.43 (s, 1H, H-1), 5.90 (m, 1H, H-3), 5.80 (d, 1H, H-2), 4.50?4.80 (m, 2H, H-5), 2.00 (s, 3H, CH3COO-). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | With N,O-bis-(trimethylsilyl)-acetamide; trimethylsilyl trifluoromethanesulfonate; In acetonitrile; at 20 - 80℃; for 1.41667h; | N, O-BIS (TRIMETHYLSILYL) ACETAMIDE (BSA, 0.16 mL, 0.64 mmol) was added to a stirred suspension of 4-chloro-5-fluoro-7H-pyrrolo [2, 3-d] pyrimidine (0.1 g, 0. 58 mmol) in dry acetonitrile (4 mL). After stirring at room temperature for 10 min, 1-O-ACETYL-2, 3, 5,-TRI-0- BENZOYL-P-D-RIBOFURANOSE (0.322 g, 0.64 mmol) was added, followed by the addition of trimethylsily trifluoromethanesulfonate (0.115 mL, 0.64 mmol). The reaction was stirred at room temperature for 15 min after which it was transferred to a preheated oil bath at 80°C. After stirring for 1 hour at 80°C, the reaction was cooled to room temperature and diluted with EtOAc (25 mL). The organic phase was then sequentially washed with saturated. NAHCO3 and brine, dried (MGS04) and concentrated to provide the crude nucleoside. Purification by column chromatography (SI02, 10-25percent EtOAc in hexanes) provided protected nucleoside (6) as a white foam (232 mg, 65percent). 1H NMR (CDC13) B : 8.63 (s, 1H), 8. 11 (d, 2H, J= 7.1 Hz), 8.01 (d, 2H, J= 7.1 Hz), 7.91 (d, 2H, J= 7.1 Hz), 7. 65-7. 33 (M, 9H), 7.17 (d, 1H, J= 2.6 Hz), 6.69 (dd, 1H J= 6.2, 1.1 Hz), 6.09 (M, 2H), 4.87 (dd, 1H, J= 12. 1,3. 0 Hz), 4.78 (dd, 1H, J= 7.2, 3.7 Hz), 4.67 (dd, 1H, J = 12. 1,3. 7 Hz). 13C NMR (CDC13) 8 : 166.1, 165.4, 165.1, 151.9, 151.1, 147.1, 143.7- 140. 3 (C-F-coupling), 133. 8, 133. 7, 133. 6,129. 8,129. 8,129. 7,129. 3,128. 7,128. 7, 128. 6, 128.5, 128.4, 109.5-109. 1 (C-C-F-coupling), 108.3-108. 1 (C-C-F-coupling), 86. 3,80. 6,73. 9, 71.4, 63.6. MS (M+H): 616.1, observed: 616.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
57% | With N,O-bis-(trimethylsilyl)-acetamide; trimethylsilyl trifluoromethanesulfonate; In acetonitrile; at 80℃; for 1h;Inert atmosphere; | To a suspension of <strong>[134-58-7]8-<strong>[134-58-7]azaguanine</strong></strong> (980 mg, 6.44 mmol) in dry ACN (27.0 mL) under argon was added sequentially N,0-bis(trimethylsilyl)acetamide (3.93 g, 19.3 mmol), [(2R,3R,4R,5,S)-5-acetoxy-3,4-dibenzoyloxy-tetrahydrofuran-2-yl]methyl benzoate (3.56 g, 7.06 mmol) and trimethylsilyl trifluoromethanesulfonate (2.86 g, 12.9 mmol). The reaction mixture was allowed to stir at rt for 15 min and then heated at 80 C for 1 h. The reaction mixture was allowed to cool to rt and the solvents were evaporated. The residue was partitioned between EtOAc and sat. NaHC03 solution and the phases were separated. The organic phase was washed with water and brine, dried over Na2S04, filtered and concentrated. The residue was adsorbed onto Celite. The crude mixture was purified by silica gel chromatography (0-7% MeOH / DCM) to provide [(2R,3R,4R,5R)-5-(5-amino-7-oxo-6H-triazolo[4,5-d]pyrimidin-3-yl)-3,4- dibenzoyloxy-tetrahydrofuran-2-yl]methyl benzoate as a yellow solid (2.30 g, 57%). LCMS (AA): m/z = 597.2 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
45% | To a solution of the compound 4 (143 mg, 0.53 mmol) in CH3CN (10 mL) was added N,O-bis (trimethylsilyl) acetamide (0.26 ml, 1.1 mmol). The reaction mixture was stirred at 80 C for 20 min and cooled down to room temperature. To the mixture were added 2,3, 5-TRI-O-BENZOYL-1-O-ACETYL-P-D-RIBOFURANOSE (5A) (320 mg, 0.63 mmol) and SnCl4 (0. 85 mL, 0.84 MMOL). The reaction mixture was stirred at 90 C for 2 h, cooled down to room temperature and diluted with CH2C12 (100 mL). The organic solution was washed with aqueous NAHCO3 solution (100 mL) and brine (100 mL), dried with NA2S04, and concentrated to dryness. Silica gel CHROMATOGRAPHY (CH2CL2 : MeOH = 95: 5) yielded 138 mg of the target compound (45%). 1H NMR (CDCl3) : 86. 60 (D, J = 3.0 Hz, 1H, H-1'). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65.1% | With hydrogenchloride; In dichloromethane; for 2.5h;Cooling with ice; | The synthesis of compound vi: The compound v (2.57mmol) was dissolved in 26 ml dry dichloromethane and dry HCl gas was slowly introduced into an ice-water bath for 2.5 hours. The solution was washed with 19.5ml ice water and the organic layer was separated. The organic layer was washed with saturated sodium bicarbonate until the water layer shows weak alkaline, and then washed with ice water until the water layer shows neutral, dried over anhydrous sodium sulfate for more than 4 hours, and then drawn off under a reduced pressure to obtain light yellow syrup. The syrup was recrystallized using the mixed solvent of hexane and dichloromethane, so as to obtain the white solid compound vi (65.1%). 1H NMR(CDCl3) deltappm: 7.36?8.14 (m, 15H, OBz), 6.68 (d, J=4.4Hz, 1H, H-1), 5.59 (dd, 1H, H-3), 4.64?4.80 (m, 4H, H-2, H-4 and H-5). M,p, 139?140C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With trimethylsilyl trifluoromethanesulfonate; In acetonitrile; at 20 - 27℃; for 4.16667h; | Preparation of 9-(2'*3'n5'-tri-O-benzoyl-ss-D-ribofuranosyl .-2-methoxyadenine; A mixture of 2-methoxyadenine (11 g, 68 mmol) and 1-O-acetyl-2, 3, 5-tri-O-benzoyl-ss-D- ribofuranose (41 g, 81 mmol) was dried by co-evaporation with anhydrous acetonitrile (2 x 60 mL). To this mixture in anhydrous acetonitrile (328 ml) was added dropwise, trimethylsilyl trifluoromethylsulfonate (29 ml, 36 g, 162 mmol) over 10 minutes (a small exotherm was noted 24-27C). The suspended material is noted to be gradually solvated during addition. On completion of addition, the reaction mixture was stirred at ambient temperature for 4 h. The reaction mixture was then diluted with dichloromethane (328 mL) and washed with 1N aq. sodium hydroxide (200 mL) and brine (200 mL). The organic phase was dried with magnesium sulfate (20g) and filtered. The solution was then concentrated under reduced pressure to approximately a quarter of its original volume at which point a precipitate started to form. After standing for 1 h the precipitate was filtered and the filter cake washed with methyl t-butyl ether (2 x 100mL). The solid was dried at room temperature to give 9-(2', 3', 5'-tri-O-benzoyl-ss-D-ribofuranosyl)-2-methoxyadenine (31g, 75 mol%) as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | Step e: (2R,3R,4R,5-R)-2-r(benzoyloxy)methyn-5-{4-r(lS)-2)3-dihydro-lH-inden-l- ylamino1-lH-imidazor4,5-clpyridin-l-yl}tetrahydrofuran-3,4-diyl dibenzoate; [0937] To a solution of N-[(lS)-2,3-dmydro-lH-inden-l-yl]-lH-imidazo[4,5- c]pyridin-4~amine (160 mg, 0.64 mmol) in AcCN (5 mL) was added N,O- bis(trimethylsilyl)acetamide (474 muL, 1.92 mmol) dropwise to obtain a clear solution which was refluxed for lOmin. The solution was allowed to cool to r.t and l-O-acetyl-2,3,5-tri-O- benzoyl-beta-D-ribofuranose (322 mg, 0.64 mmol) was added as a solution in AcCN (3 mL). Trimethylsilyl trifluoromethanesulfonate (115 muL, 0.64 mmol) was added dropwise and the reaction was heated at reflux for 3h. The reaction was quenched with MeOH, concentrated, and the residue was purified by flash chromatography (0 to 25% DCM/EtOAc) to obtain the product as a white solid (266mg, 60%).[0938] LCMS: R.t = 1.63 min, ES+ 695 (formic acid). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With toluene-4-sulfonic acid; In methanol; | EXAMPLE 10 A mixture of methyl 1,2,4-triazole-3-carboxylate (1.27 g, 0.01 mole) and 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (5.04 g, 0.01 mole) was melted and then 0.095 g of p-toluenesulfonic acid was added thereto. The reaction mixture was reacted for 3 hours, while maintaining the temperature of the reaction mixture at 95+-5° C. And then, the reaction mixture was crystallized with 25 ml of methanol to give 4.85 g of 1-(2,3,5-tri-O-benzoyl-beta-D-ribofuranosyl)-<strong>[4928-88-5]1,2,4-triazole-3-carboxylic acid methyl ester</strong> (yield: 85percent). NMR (CDCl3) delta (ppm): 3.96(d, 3H), 4.67-4.80(m, 2H), 4.87(m, 1H), 6.11(t, 1H), 6.16(q, 1H), 6.34(d, 1H), 7.38-8.07(m, 15H), 8.44(s, 1H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; acetonitrile; | (a) 1-(2,3,5-Tri-O-benzoyl-beta-D-ribofuranosyl)-<strong>[1122-28-7]4,5-dicyanoimidazole</strong> A solution of <strong>[1122-28-7]4,5-dicyanoimidazole</strong> (354 mg, 3.0 mmol) and 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (1.51 g, 3 mmol) in acetonitrile (30 mL) was charged to a flame-dried, three-necked, 50-mL round-bottomed flask, equipped with a refluxing condenser, a magnetic stirrer, and a N2 gas inlet. The solution was stirred in an ice-water bath for 5 minutes. Freshly distilled hexamethyldisilazane (HMDS) (0.7 mL, 3.3 mmol), freshly distilled chlorotrimethylsilane (CTMS) (0.45 mL, 3.6 mmol), and trifluoromethanesulfonic acid (TFMSA) (0.3 mL, 3.6 mmol) were consecutively added to the above solution. The resulting solution was stirred in an ice-water bath for 30 minutes. The reaction, as monitored by TLC (silica gel, toluene:acetic acid:water=5:5:1), showed complete conversion to the product in 30 minutes. Methylene chloride (30 mL) was added to the reaction mixture and was extracted with saturated aqueous NaHCO3. The organic layer was separated, and the aqueous layer was once again extracted with CH2 Cl2 (10 mL). The combined organic extracts were washed with saturated aqueous NaCl, dried over anhydrous MgSO4, filtered, and the filtrate was evaporated to dryness under reduced pressure to obtain a foam. Yield 1.5 g (94%), mp 68-72 C: 1 H NMR (DMSO-d6) delta 8.68 (s, 1 H, imidazole CH), 7.92 (m, 5 H, Ph-H), 7.63 (m, 5 H, Ph-H), 7.40 (m, 5 H, Ph-H), 6.63 (d, J=4.8 Hz, 1 H, H-1'), 6.06 (t, J=5.1 Hz, 1 H, H-2'), 5.99 (t, 1 H, H-3'), 4.97 (q, 1 H, H-4'), 4.74 (dd, 2 H, H-5'); 13 C NMR (DMSO-d6) delta 163 (C=O), 161 (C=O), 160.5 (C=O), 142.6 (imidazole CH), 135 (Ph-C), 134.8 (Ph-C), 134.4 (Ph-C), 130.4 (Ph-C), 130.2 (Ph-C), 130.0 (Ph-C), 129.8 (Ph-C), 129.7 (Ph-C), 129.5 (Ph-C), 129.4 (Ph-C), 129.3 (Ph-C), 129.0 (Ph-C), 124 (C=C), 113 (C N), 111.7 (C N), 109.2 (C=C), 89.8 (C-1'), 81.8 (C-2'), 75.5 (C-3'), 71.5 (C-4'), 64.2 (C-5'). Anal. Calcd. for C31 H22 N4 O7: C, 66.19; H, 3.94; N, 9.96. Found: C, 66.20; H, 3.96; N, 9.76. | |
In dichloromethane; acetonitrile; | (a) 1-(2,3,5-Tri-O-benzoyl-beta-D-ribofuranosyl)-<strong>[1122-28-7]4,5-dicyanoimidazole</strong> A solution of <strong>[1122-28-7]4,5-dicyanoimidazole</strong> (354 mg, 3.0 mmol) and 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (1.51 g, 3 mmol) in acetonitrile (30 mL) was charged to a flame-dried, three-necked, 50-mL round-bottomed flask, equipped with a refluxing condenser, a magnetic stirrer, and a N2 gas inlet. The solution was stirred in an ice-water bath for 5 minutes. Freshly distilled hexamethyldisilazane (HMDS) (0.7 mL, 3.3 mmol), freshly distilled chlorotrimethylsilane (CTMS) (0.45 mL, 3.6 mmol), and trifluoromethanesulfonic acid (TFMSA) (0.3 mL, 3.6 mmol) were consecutively added to the above solution. The resulting solution was stirred in an ice-water bath for 30 minutes. The reaction, as monitored by TLC (silica gel, toluene:acetic acid:water =5:5:1), showed complete conversion to the product in 30 minutes. Methylene chloride (30 mL) was added to the reaction mixture and was extracted with saturated aqueous NaHCO3. The organic layer was separated, and the aqueous layer was once again extracted with CH2Cl2 (10 mL). The combined organic extracts were washed with saturated aqueous NaCl, dried over anhydrous MgSO4, filtered, and the filtrate was evaporated to dryness under reduced pressure to obtain a foam. Yield 1.5 g (94%), mp 68-72 C.: 1H NMR (DMSO-d6) delta 8.68 (s, 1H, imidazole CH), 7.92 (m, 5H, Ph-H), 7.63 (m, 5H, Ph-H), 7.40 (m, 5H, Ph-H), 6.63 (d, J=4.8 Hz, 1H, H-1'), 6.06 (t, J=5.1 Hz, 1H, H-2'), 5.99 (t, 1H, H-3'), 4.97 (q, 1H, H-4'), 4.74 (dd, 2H, H-5'); 13C NMR (DMSO-d6) delta 163 (C=O), 161 (C=O), 160.5 (C=O), 142.6 (imidazole CH), 135 (Ph-C), 134.8 (Ph-C), 134.4 (Ph-C), 130.4 (Ph-C), 130.2 (Ph-C), 130.0 (Ph-C), 129.8 (Ph-C), 129.7 (Ph-C), 129.5 (Ph-C), 129.4 (Ph-C), 129.3 (Ph-C), 129.0 (Ph-C), 124 (C=C), 113 (C?N), 111.7 (C?N), 109.2 (C=C), 89.8 (C-1'), 81.8 (C-2'), 75.5 (C-3'), 71.5 (C-4'), 64.2 (C-5'). Anal. Calcd. for C31H22N4O7: C, 66.19; H, 3.94; N, 9.96. Found: C, 66.20; H, 3.96; N, 9.76. |
Yield | Reaction Conditions | Operation in experiment |
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Methyl 1,2,3-triazole-4-carboxylate (2.54 g, 0.020 mol) and 1-O-acetyl- 2,3,5-tri-O-benzoyl-beta -D-ribofuranosyl (10.1 g, 0.020 mol) and 1-0-acetyl-2,3,5-tri-0-benzoyl-beta-D-ribofuranose (10.1 g, 0.020 mol) were thoroughly mixed in a mortar, then heated in an oil bath at 160° until a melt was achieved. <strong>[645-15-8]Bis-(p-nitrophenyl)phosphate</strong> (5 mg) was added and heating in vacuo at 160°-165° was continued for 10 minutes. The residue was triturated with benzene and the insoluble product was collected and recrystallized from benzene to yield 3.00 g of 2, m.p. 189°-190°, which was identical with an authentic sample prepared by cycloaddition of the azido sugar with methyl propiolate as reported by Alonso, et al. J Heterocyclic Chem., 7, 1269 (1970). The filtrate was evaporated to a syrup and the residue was crystallized from methanol to provide 3.83 g of 1: m.p. 112°-113°; [alpha]D25 -57.6° (c 1.00, chloroform); nmr (DMSO-d6) delta 6.87 (d, 1, J1',2' 2.2 Hz, 1'--H), 8.50 (s, 1, 5--H); (CDCl3) delta 6.59 (d, 1, J1',2' 1.3 Hz, 1'--H), 8.12 (s, 1, 5--H). Anal. Calcd for C30 H25 N3 O9: C, 63.04; H, 4.41; N, 7.35. Found: C, 63.00; H, 4.46; N, 7.12. |
Yield | Reaction Conditions | Operation in experiment |
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EXAMPLE 2 1-(2,3,5-tri-O-benzoyl-beta-D-ribofuranosyl)-1,2,4-triazole-3-carboxylic acid methyl ester (fusion procedure) A mixture of methyl 1,2,4-triazole-3-carboxylate (12.7 g., 100 mmole) and 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (55.4 g., 110 mmole) was heated in an oil bath maintained at 160-165°. After the sugar had melted, bis(p-nitrophenyl) phosphate (400 mg.) was added with stirring and the mixture was heated under diminished pressure at 160-165° for 15-20 min. Crystallization of the residue from ethyl acetate-ethanol provided 42.5 g. (74.5percent) of product with M.P. 137-139°. |
Yield | Reaction Conditions | Operation in experiment |
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71% | Example 2 Coupling of Silyl 5-Azacytosine to Sugar and Deprotection A mixture of 2-[(trimethylsilyl)amino]-4-[(trimethylsilyl)oxy]-s-triazine (4.5 Kg), 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (8.8 Kg), anhydrous MeCN (34.6 Kg) and TfOH (600 g) were heated at 55 C. for 12.5 hours. The reaction mixture was cooled to 45 C., DMSO (29 Kg) was added, and the MeCN was evaporated at an internal temperature of <50 C. under vacuum until about 54 L of the solution. The solution was cooled to 23 C. MeOH (13.9 Kg) was added followed by a solution of 30% NaOMe in MeOH solution (2.5 Kg) that was pre-diluted with MeOH (7.0 Kg). The solution was stirred at 23 C. for 35 minutes. When the reaction was complete MeOH (90.4 Kg) was added and the resulting slurry was stirred at 22 C. for 3 hours and 10 minutes and was then filtered and washed three times with MeOH (7.0 Kg each). The cake was dried under vacuum at below 70 C. for 9 hours and 20 minutes to give 3.2 Kg of 98.89% purity crude azacitidine (71% yield based on 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose). |
Yield | Reaction Conditions | Operation in experiment |
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63% | With trimethylsilyl trifluoromethanesulfonate; 1,8-diazabicyclo[5.4.0]undec-7-ene; In acetonitrile; at 20 - 80℃; for 17.5h; | To a suspension of MM (6.7 g, 24.0 mmol) and JJ (12 g, 24.0 mmol) in anhydrous acetonitrile (240 ml) was added DBU (5.4 ml, 36.0 mmol). The mixture was then treated with TMSOTf (8.7 ml, 48.0 mmol). The mixture was stirred at room temperature for 30 min and then heated at 80 C for 17 h. The mixture was cooled to room temperature. A saturated aqueous NaHCO3 solution (250 ml) was added to the reaction mixture and extracted with EtOAc (2 x 200 ml). The organics were dried over Na2SO4 and concentrated to give orange residue. The orange residue was triturated with methanol to give brown solid. The brown solid was dissolved in minimal amount OfCH2Cl2 and loaded onto a column packed with silica/CH2Cl2 and eluted with CH2Cl2 /EtOAc (2:1). The fractions containing the required product were collected and concentrated to afford (2R,3R,4R,5R)-2- (benzoyloxymethyl)-5-(4-chloro-5-iodo-7H-pyrrolo[2,3-d]pyrimidin-7-yl)tetrahydrofuran- 3,4-diyl dibenzoate as off-white solid (10.9 g, 63%). LC/MS m/z 724 (M+H). |
4.51 g | With N,O-bis-(trimethylsilyl)-acetamide; trimethylsilyl trifluoromethanesulfonate; In acetonitrile; for 2h;Reflux; | To a stirred suspension of pyrimidine S21 (2.89 g, 10.4 mmol) in 52 mL of CH3CN was added BSA (2.79 mL, 11.42mmol). The solution was stirred for 10 minutes during which time the reaction mixture became homogenous. 1-OAcetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (5.75 g, 11.4 mmol) was added followed by TMSOTf (2.15 mL, 11.4mmol), and the reaction was heated to reflux for 2 h before being cooled to rt and diluted with 100 mL of EtOAc. The organic layer was washed with 100 mL of satd. NaHCO3 and 100 mL of brine. The organic layer was dried(Na2SO4), filtered, and concentrated in vacuo to afford a yellow oil. The oil was purified by flash chromatography(40% EtOAc/Hexanes) to afford the riboside 42 |
Yield | Reaction Conditions | Operation in experiment |
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100% | With triethylsilane; trimethylsilyl trifluoromethanesulfonate; In acetonitrile; at 20℃;Inert atmosphere; | Trimethylsilyl trifluoromethanesulfonate (7.2 mL, 40.0 mmol) was added to a solution of 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (10.1 g, 20.0 mmol) and triethylsilane (9.6 mL, 60.0 mmol) in MeCN (20 mL), and then the mixture was stirred at room temperature for 24 h. The mixture was partitioned between EtOAc and saturated aqueous NaHCO3 solution. The organic layer was wash with brine, dried over Na2SO4, and concentrated under reduced pressure. The residue was purified by column chromatography on silica gel (n-hexane/EtOAc, 15:1~12:1) to give 2,3,5-tri-O-benzoyl-1-deoxy-D-ribofuranose as a colorless oil (8.9 g, quant). |
Yield | Reaction Conditions | Operation in experiment |
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54% | 3.9.4,6-Dichloro-9-(2,3,5-tri-O-benzoyl-beta-d-ribofuranosyl)-pyrimido[4,5-b]indole (13): Pyrimidoindole 11 (200 mg, 0.84 mmol) was suspended in acetonitrile (5 ml) and BSA (206 mul, 0.84 mmol) was added. Reaction mixture was stirred for 10 min at rt., TMSOTf (308 mul, 1.68 mmol) and protected ribofuranose (430 mg, 0.84 mmol) were added. Mixture was heated to 60 C for 8 h. After cooling to rt, the mixture was extracted with EtOAc and water, organic layer was washed with NaHCO3 and again with water, dried over MgSO4 and evaporated under reduced pressure. Crude product was purified using column chromatography (hexane/EtOAc, 0-40% EtOAc). After crystallization from chloroform/methanol mixture, nucleoside 13 (572 mg, 54%) was observed as white crystals; mp: 164-165 C. IR (ATR): nu = 1722, 1545, 1472, 1433, 1292, 1266, 1119, 1098, 714 cm-1. 1H NMR (600.1 MHz, DMSO-d6):): 4.68 (dd, 1H, Jgem = 12.4, J5'b,4' = 4.3, H-5'b); 4.85 (dd, 1H, Jgem = 12.4, J5'a,4' = 3.2, H-5'a); 4.90 (ddd, 1H, J4',3' = 6.6, J4',5' = 4.3, 3.2, H-4'); 6.36 (t, 1H, J3',2' = J3',4' = 6.6, H-3'); 6.59 (dd, 1H, J2',3' = 6.6, J2',1' = 4.4, H-2'); 7.02 (d, 1H, J1',2' = 4.4, H-1'); 7.42 (m, 2H, H-m-Bz-2'); 7.49 (m, 4H, H-m-Bz-3',5'); 7.60 (dd, 1H, J7,8 = 9.1, J7,5 = 2.2, H-7); 7.62 (m, 1H, H-p-Bz-2'); 7.68 (m, 2H, H-p-Bz-3',5'); 7.84 (m, 2H, H-O-Bz-2'); 7.91 (m, 2H, H-O-Bz-5'); 7.99 (m, 2H, H-o-Bz-3'); 8.15 (dd, 1H, J8,7 = 9.1, J8,5 = 0.5, H-8); 8.28 (dd, 1H, J5,7 = 2.2, J5,8 = 0.5, H-5); 8.81 (s, 1H, H-2). 13C NMR (150.9 MHz, DMSO-d6): 63.1 (CH2-5'); 70.3 (CH-3'); 72.5 (CH-2'); 78.9 (CH-4'); 86.4 (CH-1'); 111.7 (C-4a); 114.0 (CH-8); 119.4 (C-4b); 122.0 (CH-5); 128.6, 128.8 (C-i-Bz); 128.9 (CH-7); 128.9, 128.9, 129.0 (CH-m-Bz); 129.3 (CH-o-Bz-5'); 129.3 (C-i-Bz); 129.5 (CH-O-Bz-2'); 129.6 (CH-O-Bz-3'); 133.8, 134.1 (CH-p-Bz); 137.1 (C-8a); 152.7 (C-4); 154.6 (CH-2); 155.5 (C-9a); 164.8 (COPh-2'); 165.0 (COPh-3'); 165.5 (COPh-5'). ESI MS m/z (rel.%): 682 (100) [M+H], 684 (66) [M+2+H], 686 (26) [M+4+H]. HR MS (ESI) for C36H26Cl2N3O7 [M+H]: calcd 682.11480; found 682.11423; for C36H25Cl2N3O7Na [M+Na]: Calcd 704.09660; found 704.09618. |
Yield | Reaction Conditions | Operation in experiment |
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46% | 3.9. 4,6-Dichloro-9-(2,3,5-tri-O-benzoyl-b-D-ribofuranosyl)-pyrimido[4,5-b]indole (13) : Pyrimidoindole 11 (200 mg, 0.84 mmol) was suspended in acetonitrile (5 ml) and BSA (206 ll, 0.84 mmol) was added. Reaction mixture was stirred for 10 min at rt., TMSOTf (308 ll, 1.68 mmol) and protected ribofuranose (430 mg, 0.84 mmol) were added. Mixture was heated to 60 C for 8 h. After cooling to rt, the mixture was extracted with EtOAc and water, organic layer was washed with NaHCO3 and again with water, dried over MgSO4 and evaporated under reduced pressure. Crude product was purified using column chromatography (hexane/EtOAc, 0-40% EtOAc). After crystallization from chloroform/methanol mixture, nucleoside 13 (572 mg, 54%) was observed as white crystals; 3.10 4-Chloro-9-(2,3,5-tri-O-benzoyl-beta-d-ribofuranosyl)-pyrimido[4,5-b]indole (14) : Compound 14 was prepared as described for 13 from pyrimidoindole 12 (300 mg, 1.5 mmol) to give 440 mg (46%) of white crystals; mp 178-182 C, IR (ATR): nu = 2360, 2336, 1718, 1546, 1442, 1261, 1090, 1068, 704 cm-1. H NMR (600.1 MHz, DMSO-d6): 4.69 (dd, 1H, Jgem = 12.4, J5'b,4' = 4.2, H-5'b); 4.85 (dd, 1H, Jgem = 12.4, J5'a,4' = 3.2, H-5'a); 4.91 (ddd, 1H, J4',3' = 6.6, J4',5' = 4.2, 3.2, H-4'); 6.36 (t, 1H, J3',2' = J3',4' = 6.6, H-3'); 6.61 (dd, 1H, J2',3' = 6.6, J2',1' = 4.6, H-2'); 7.03 (d, 1H, J1',2' = 4.6, H-1'); 7.41 (m, 2H, H-m-Bz-2'); 7.50 (m, 4H, H-m-Bz-3',5'); 7.51 (ddd, 1H, J6,5 = 7.8, J6,7 = 7.3, J6,8 = 1.0, H-6); 7.57 (ddd, 1H, J7,8 = 8.4, J7,6 = 7.3, J7,5 = 1.3, H-7); 7.62 (m, 1H, H-p-Bz-2'); 7.68 (m, 2H, H-p-Bz-3',5'); 7.84 (m, 2H, H-o-Bz-2'); 7.93 (m, 2H, H-o-Bz-5'); 7.99 (m, 2H, H-o-Bz-3'); 8.10 (ddd, 1H, J8,7 = 8.4, J8,6 = 1.0, J8,5 = 0.7, H-8); 8.35 (ddd, 1H, J5,6 = 7.8, J5,7 = 1.3, J5,8 = 0.7, H-5); 8.78 (s, 1H, H-2). 13C NMR (150.9 MHz, DMSO-d6): 63.1 (CH2-5'); 70.3 (CH-3'); 72.2 (CH-2'); 78.8 (CH-4'); 86.2 (CH-1'); 112.1 (CH-8); 112.4 (C-4a); 118.0 (C-4b); 122.9 (CH-5); 123.3 (CH-6); 128.6, 128.8 (C-i-Bz); 128.9 (CH-m-Bz); 129.0 (CH-7); 129.3 (CH-o-Bz-5'); 129.4 (C-i-Bz); 129.5 (CH-o-Bz-2'); 129.6 (CH-o-Bz-3'); 133.8, 134.1 (CH-p-Bz); 138.4 (C-8a); 152.1 (C-4); 154.0 (C-2-furyl); 154.0 (CH-2); 155.3 (C-9a); 164.8 (COPh-2'); 165.0 (COPh-3'); 165.5 (COPh-5'). ESI MS m/z (rel.%): 670 (100) [M+Na], 672 (33) [M+2+Na]. HR MS (ESI) for C36H27ClN3O7 [M+H]: calcd 648.15320; found 648.15318. |
Yield | Reaction Conditions | Operation in experiment |
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70% | 5-Nitrocytosine, 7 (3 g, 19.23 mmol) was suspended in HMDS (40 mL, 191.8 mmol) containing TMS-Cl (1 mL, 7.82 mmol). The mixture was heated under reflux for 36 h and then concentrated in vacuo. To this crude material was added beta-D-ribofuranose-1-acetate-2,3,5-tribenzoate (9.737 g, 19.30 mmol) and the material was suspended in MeCN (125 mL). The suspension was degassed with N2, then SnCl4 (23 mL in 1 M solution in CH2Cl2) was added. The suspension quickly turned clear and then the solution was stirred for 3 h at room temperature. Distilled water (100 mL) was added with vigorous stirring to hydrolyze the remaining SnCl4. This facilitated the precipitation of the product. The solid was collected, suspended in EtOAc (500 mL) and washed with aq Na2CO3 (600 mL 4). The organic layer was diluted with EtOAc and washed with satd NaCl (700 mLx1) and H2O (700 mLx2). The organic layer was dried over anhydrous Na2SO4 and concentrated in vacuo. The resulting solid was triturated with CHCl3 and dried in vacuo yielding 8 g of the product (70%). Mp 218-220 C decomp. (Reported mp 211-213 C decomp.).43 [alpha]D23 -101.3 (c 1.02, CHCl3). IR (ZnSe): nu 3480, 3366, 3060, 1716, 1684, 1653, 1601, 1589, 1583, 1491,1119,1418,1363, 1281, 1265, 1130, 1110,1093,1039,1069, 1048, 1024, 927, 891, 851, 819, 761, 736, 703 cm-1. 1H NMR (600 MHz, CDCl3): delta 9.08 (s, 1H), 8.27 (br s, 1H), 8.07 (d, J=6.2 Hz, 2H), 7.95 (s, 1H), 7.92-7.89 (m, 4H), 7.55-7.52 (m, 3H) 7.45-7.31 (m, 6H), 6.33 (d, J=2.1 Hz, 1H), 5.91-5.91 (m, 2H), 4.83-4.76 (m, 3H) ppm. 13C NMR (150 MHz, CDCl3) delta: 166.1, 165.2, 157.7, 151.8,146.4, 133.7, 133.7, 133.5, 129.9, 129.8, 129.7, 128.5, 120.2, 90.5, 81.2, 74.9, 70.9, 63.4 ppm. HRMS (MALDI-TOF) m/z: calculated for C30H24N4NaO10+: 623.138 (MNa+). Found: 623.140 (MNa+). |
Yield | Reaction Conditions | Operation in experiment |
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64% | General procedure: N,O-Bis(trimethylsilyl)acetamide (488.2 mg, 586.8 muL, 2.40 mmol) was added to a suspension of 7-bromo-6-chloro-7-deazapurine (464.9 mg, 2.00 mmol) in 20 mL dry acetonitrile. Afterwards, the solution was stirred for 15 min at room temperature in an argon atmosphere,followed by the addition of 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-Dribofuranose(1.21 g, 2.40 mmol) and trimethylsilyl trifluoromethanesulfonate(533.4 mg, 434.4 muL, 2.40 mmol). The reaction mixture was heated for 2 h at 80 C under argon with vigorous stirring. After glycosylation, the solution was left to cool down and diluted with 400 mL ethyl acetate. The organic phase was sequentially washed twice with a saturated sodium hydrogen carbonate solution and brine. Subsequently, the organic layer was dried with magnesium sulfate and the solvent was removed under vacuum, to afford the crude nucleoside. Purification by column chromatography on silica gel with hexane/ethylacetate (2:1) as eluent yielded the product as colorless solid (864.0 mg,1.28 mmol, 64%). 1H NMR (300 MHz, DMSO-d6) delta 8.62 (1H, s), 8.32(1H, s), 8.00-7.84 (6H, m), 7.69-7.61 (3H, m), 7.54-7.40 (6H, m), 6.73(1H, d, J=5.0 Hz), 6.32-6.28 (1H, m), 6.16-6.11 (1H, m), 4.90-4.85(1H, m), 4.84-4.65 (2H, m); 13C NMR (75 MHz, DMSO-d6) delta 165.4,164.7, 164.5, 151.4, 151.0, 150.3, 134.0, 133.9, 133.6, 129.4, 129.4,129.3, 129.2, 129.2, 128.8, 128.6, 128.2, 114.9, 88.1, 86.6, 79.3, 73.5,70.6, 63.4; HRMS (ESI): m/z calcd for C32H24BrClN3O7 [M+H]+676.0481, found 676.0489. | |
63% | N,O-Bis(trimethylsilyl)acetamide (BSA, 0.56 mL, 2.27 mmol) was added to a stirred suspension of 5-bromo-4-chloro-7H-pyrrolo[2,3-d]pyrimidine (480 mg, 2.06 mmol) in dry acetonitrile (15 mL). After stirring at rt for 10 min, 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-d-ribofuranose (1.16 g, 2.31 mmol) was added, followed by the addition of trimethylsilyl trifluoromethanesulfonate (0.41 mL, 2.25 mmol). The reaction mixture was stirred at rt for 15 min, after which the flask was transferred to a preheated 80 C oil bath. After stirring for 1 h at 80 C, the reaction mixture was cooled to rt and diluted with EtOAc (75 mL). The organic phase was sequentially washed with aqueous saturated NaHCO3 solution and brine, dried (Na2SO4), filtered, and concentrated under reduced pressure to afford the crude nucleoside. Purification by flash column chromatography (silica gel, 20-100% EtOAc/hexanes gradient) provided (1) as a colorless foam (870 mg, 63%). TLC (silica gel, hexanes/ethyl acetate 3:1): Rf = 0.45. LRMS (ESI): 677.3, 675.2 and 673.2 [M+H]+. | |
A solution of 56b (20 g, 86 mmoi) in thy ACN (300 mL) under nitrogen was charged with iV,O-Bistrimethyisiiyi)acetamide (19.3 g, 95 mmol) then stirred at RT for 30 mm. The mixture was then charged with I -O-acetvl-2.3.5-tri-O-benzoyl-13-d-ribofiiranose (56c) (48.1 g, 78 mmol) and TMSOTf(21 g, 78 mmol) and stirred at RT for 30 mm. The mixture was then heated and stirred at 80 C for 5 h. The reaction mixture was cooled to RI, diluted with EtOAc (1 IL) washed with sat. sodium bicarbonate (ilL), brine (1 IL), dried over Na2SO4, and filtered. The filtrate was concentrated under reduced pressure and purified by FCC (Si02, 15% EtOAc in hexanes) to afford 56d (31.4 g, 40.1 mmol, 51% yield) as a white solid foam. LCMS purity:86.5%; LRMS (ES1) m/z caicd for [M+H]?: 676.05/678.05. Found: 676.05/678.05. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | General procedure: To a cold solution (0C) of 1-O-2,3,5-tri-O-benzoyl-beta-D-ribofuranose(484 mg, 0.96 mmol) in 1,2-dichloroethane (12 mL) under nitrogen, tintetrachloride (0.14 mL, 1.18 mmol) was added and the solution was kept at 0C for 10 minutes. After addition of 1-[5-O-tert-butyldiphenylsilyl-2-deoxy-beta-D-ribofuranosyl]-5-fluorouracil (387 mg, 0.8 mmol), the resulting solution was kept at 0C for 40 minutes. Then 10% aqueous solution of sodium bicarbonate(5 mL) was added and the suspension was stirred at 0C for 20 minutes.The suspension was diluted with methylene chloride (20 mL) and filtered through Hyflo Super Cel; the organic layer was separated, washed with water (10 mL), dried, and evaporated to dryness. The residue was purified by column chromatography on silica gel (50 g). The column was washed with methylene chloride (500 mL) and then eluted with 1%ethanol in methylenechloride to give the resulting product as foam. The yield was 446 mg (60%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With trimethylsilyl trifluoromethanesulfonate; In dichloromethane; at -30℃; for 1.5h; | To a solution of 1-O-acethyl-2,3,5-O-tribenzoyl-b-D-ribofuranose (2.00 g, 3.97 mmol) in CH2Cl2 (20 mL) was added dropwiseTMSOTf (0.86 mL, 4.76 mmol) and 2,2,2-trifluoroethanol (0.28 mL,3.97 mmol) at 30 C. The mixture was stirred at 30 C for 1.5 hand quenched by using aqueous NaHCO3 (saturated). The mixturewas partitioned between CHCl3 and H2O. The organic layer waswashed with aqueous NaHCO3 (saturated) and brine, dried(Na2SO4), and concentrated. The residue was purified by columnchromatography (SiO2, 20% EtOAc in hexane) to give 18 (2.16 g,3.97 mmol, 100%): 1H NMR (400 MHz, CDCl3) d 3.90e4.15 (m, 2H),4.56 (dd, 1H, J 5.5 and 11.9), 4.70 (dd, 1H, J 4.2 and 12.4), 4.78(dd, 1H, J 5.5 and 11.0), 5.37 (s, 1H), 5.78 (d, 1H, J 5.0), 5.88 (dd,1H, J 5.0 and 7.4), 7.30e8.07 (m, 15H); 13C NMR (126 MHz, CDCl3)d 64.5, 64.6, 64.9, 71.9, 75.3, 79.9, 105.6, 128.5, 128.5, 128.6, 129.6,129.8, 129.8,129.9,133.4, 133.6, 133.7,165.2, 165.4, 166.2. Anal. Calcdfor C28H23F3O81/10H2O: C, 61.56; H, 4.28. Found: C, 61.38; H, 4.24. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With trimethylsilyl trifluoromethanesulfonate; In dichloromethane; at -30℃; for 1.5h; | To a solution of 1-O-acethyl-2,3,5-O-tribenzoyl-b-D-ribofuranose (3.00 g, 5.95 mmol) in CH2Cl2 (30 mL) was added dropwiseTMSOTf (1.29 mL, 7.14 mmol) and ethanol (0.35 mL, 5.95 mmol) ate30 C. The mixture was stirred at 30 C for 1.5 h and quenchedby using aqueous NaHCO3 (saturated). The mixture was partitionedbetween CHCl3 and H2O. The organic layer was washed withaqueous NaHCO3 (saturated) and brine, dried (Na2SO4), andconcentrated. The residue was purified by column chromatography(SiO2, 20% EtOAc in hexane) to give 14 (2.91 g, 5.94 mmol, 100%): 1HNMR (400 MHz, CDCl3) d 1.18 (t, 3H, J 7.1), 3.54 (dq, 1H, J 6.8 and8.5), 3.84 (dq, 1H, J 6.9 and 11.9), 4.52 (dd, 1H, J 6.4 and 12.8),4.66e4.74 (m, 2H), 5.26 (s, 1H), 5.67 (d, 1H, J 4.6), 5.88 (dd, 1H,J 5.0 and 6.4), 7.25e8.11 (m, 15H); 13C NMR (126 MHz, CDCl3)d 15.0, 64.0, 65.0, 72.7, 75.8, 78.9, 105.4, 128.4, 128.6, 129.1, 129.4,129.8, 129.9, 133.2, 133.4, 133.5, 165.4, 165.5, 166.3. Anal. Calcd forC28H26O87/10H2O: C, 66.84; H, 5.49. Found: C, 66.86; H, 5.19. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | With trimethylsilyl trifluoromethanesulfonate; In dichloromethane; at -30℃; for 0.5h; | To a solution of 1-O-acethyl-2,3,5-O-tribenzoyl-b-D-ribofuranose (3.00 g, 5.95 mmol) in CH2Cl2 (30 mL) was added dropwiseTMSOTf (1.29 mL, 7.14 mmol) and 1-propanol (0.53 mL, 7.14 mmol)at 30 C. The mixture was stirred at 30 C for 30 min andquenched by using aqueous NaHCO3 (saturated). The mixture waspartitioned between CHCl3 and H2O. The organic layer was washedwith aqueous NaHCO3 (saturated) and brine, dried (Na2SO4), andconcentrated. The residue was purified by column chromatography(SiO2, 20% EtOAc in hexane) to give 15 (2.94 g, 5.83 mmol, 98%): 1HNMR (600 MHz, CDCl3) d 0.90 (t, 3H, J 7.6),1.55e1.59 (m, 2H), 3.42(dd, 1H, J 6.9 and 15.8), 3.74 (dd, 1H, J 6.8 and 14.4), 4.52e4.54(m, 1H), 4.69e4.72 (m, 2H), 5.25 (s, 1H), 5.68 (d, 1H, J 4.8), 5.87(dd, 1H, J 2.8 and 5.0), 7.31e8.07 (m, 15H); 13C NMR (151 MHz,CDCl3) d 10.5, 14.2, 21.0, 22.6, 60.4, 65.1, 70.1, 72.7, 75.6, 78.7, 105.5,128.3, 128.5, 129.0, 129.3, 129.7, 129.8, 129.8, 133.1, 133.3, 133.4.Anal. Calcd for C29H28O8: C, 69.04; H, 5.59. Found: C, 68.80; H, 5.58. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | With trimethylsilyl trifluoromethanesulfonate; In dichloromethane; at -30℃; for 2.5h; | To a solution of 1-O-acethyl-2,3,5-O-tribenzoyl-b-D-ribofuranose (2.00 g, 3.97 mmol) in CH2Cl2 (20 mL) was added dropwiseTMSOTf (0.86 mL, 4.76 mmol) and 2-methyl-1-propanol (0.37 mL,3.97 mmol) at 30 C. The mixture was stirred at e30 C for 2.5 hand quenched by using aqueous NaHCO3 (saturated). The mixturewas partitioned between CHCl3 and H2O. The organic layer waswashed with aqueous NaHCO3 (saturated) and brine, dried(Na2SO4), and concentrated. The residue was purified by columnchromatography (SiO2, 20% EtOAc in hexane) to give 16 (2.02 g,3.90 mmol, 98%): 1H NMR (400 MHz, CDCl3) d 0.87e0.92 (m, 6H),1.80e1.87 (m, 1H), 3.21 (dd, 1H, J 6.9 and 9.2), 3.58 (dd, 1H, J 6.4and 9.2), 4.53 (dd, 1H, J 5.3 and 11.2), 4.66e4.73 (m, 2H), 5.24 (s,1H), 5.69 (d, 1H, J 4.6), 5.85 (dd, 1H, J 4.6 and 6.9), 7.25e8.12 (m,15H); 13C NMR (151 MHz, CDCl3) d 19.2, 19.3, 28.3, 64.1, 65.2, 70.9,71.9, 72.8, 75.1, 75.6, 78.7, 101.0, 105.7, 128.3, 128.3, 128.5, 129.0,129.3, 129.7, 129.8, 133.1,133.3,133.4,165.3, 165.4, 166.2. Anal. Calcdfor C30H30O87/10H2O: C, 67.84; H, 5.96. Found: C, 67.59; H, 5.73. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With trimethylsilyl trifluoromethanesulfonate; In dichloromethane; at -30℃; for 3.5h; | To a solution of 1-O-acethyl-2,3,5-O-tribenzoyl-b-D-ribofuranose (3.00 g, 5.95 mmol) in CH2Cl2 (25 mL) was added dropwiseTMSOTf (1.29 mL, 7.14 mmol) and 2,2-dimethyl-1-propanol (0.52 g,5.95 mmol) in CH2Cl2 (5 mL) at e30 C. The mixture was stirredat 30 C for 3.5 h and quenched by using aqueous NaHCO3(saturated). The mixture was partitioned between CHCl3 and H2O.The organic layer was washed with aqueous NaHCO3 (saturated)and brine, dried (Na2SO4), and concentrated. The residue was purified by column chromatography (SiO2, 20% EtOAc in hexane) togive 17 (2.84 g, 5.33 mmol, 90%): 1H NMR (400 MHz, CDCl3) d 0.92(s, 9H), 3.10 (d, 1H, J 9.2), 3.52 (d, 1H, J 9.2), 4.55 (dd, 1H, J 6.0and 11.4), 4.65 (dd, J 4.6 and 11.4), 4.73 (dd, 1H, J 6.9 and 11.5),5.24 (s, 1H), 5.71 (d, 1H, J 5.0), 5.82 (dd, 1H, J 5.0 and 6.8),7.28e8.12 (m, 15H); 13C NMR (126 MHz, CDCl3) d 4.9, 4.8, 18.0,19.4, 19.4, 25.7, 28.3, 55.3, 64.4, 72.7, 74.9, 75.5, 82.7, 86.0, 107.5,113.1, 126.7, 127.8, 128.4, 130.2, 136.3, 145.0, 158.5. Anal. Calcd forC31H32O81/2H2O: C, 68.75; H, 6.14. Found: C, 68.66; H, 5.89. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | General procedure: Ethyl ester 6a or 7a (200 mg, 0.66 mmol) was added into a solution of BSTFA containing 1% of TMSCl (0.50 ml, 1.85 mmol) in anhydrous acetonitrile (3 ml) and the mixture was heated at 60 C under an Ar atmosphere for 3 h. To the resulting solution which was allowed to cool to room temperature, a solution of 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose 16 (334 mg, 0.66 mmol) in anhydrous acetonitrile (4 ml) was added followed by dropwise addition of TMSOTf (0.06 ml, 0.33 mmol). After 2 h of stirring, the reaction mixture was poured into ice-cold water (20 ml) and neutralized with a saturated aqueous solution of NaHCO3. The resulting solution was extracted with CHCl3 (3 × 20 ml) and the combinedS11organic layers were washed with water (3 × 20 ml), dried over anhydrous Na2SO4, filtered and evaporated under reduced pressure to give products 17 and 18 as white crystals. Isolated nucleoside 17 was characterized and used in the next reactions without further purification. Nucleoside 18 was recrystallized from ethanol. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | A suspension of 8-bromo-3-methyl-3,7-dihydro-1H-purine-2,6-dione 4 (5.34 g,21.82 mmol) and a catalytic amount of (NH4)2SO4 (20 mg) in HMDS (25 mL) was heated to reflux (? 125 C) in an inert atmosphere under argon. A clear solution obtained after 30 min. Reflux continued for 3 h and cooled to room temperature. Excess HMDS was removed in vacuo to obtain white solid which is further dried at 90 C under vacuum for 2 h to remove traces of HMDS. Thus obtained white solid and 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (5a) (10.0 g, 19.83 mmol) were taken up in dry EtOAc (100 mL) under argon atmosphere. The reaction mixture is cooled to 0 C and SnCl4 (3.5 mL) was added drop wise in 15 min under argon atmosphere. After completion of the addition, reaction mixture was stirred for 15 min at 0 C before raised to room temperature. After 1 h stirring at room temperature, Na2CO3 (2.0 g), NaHCO3(2.0 g) were added to the reaction mixture. Reaction mixture was cooled to 5 C and purified water (25 mL) was added by maintaining the temperature at 5 C to 10 C. Reaction mixturewas filtered after 10 min and filtrate was washed with satd. NaHCO3, Na2CO3 and brine solution. Organic layer was dried over MgSO4 and distilled out in vacuo at 50 C to obtain white foam. Thus obtained product was dissolved in hot EtOAc (25mL) (50 C) and silica gel (15.0 g) (60-120 mesh), activated charcoal (2.0 g) was added. Stirred for 10 min at 50 C and filtered through the celite pad and washed the celite pad withhot EtOAc (100 mL). Distilled out the complete solvent to dryness to obtain crude 6a (11.6 g, 85 % yield) as white foam (Scheme-I). The crude product chromatographed (hexane-EtOAc, 6:4) to give the pure 6a (9.54 g, 70 % yield) as off white solid. m.p. >155 C; [alpha]D20= -33 (C = 1.0 in DCM), 1H NMR (400 MHz, CDCl3,) delta ppm 8.55 (s, 1H, N-H), 7.80-8.07 (m, 6H, o-Ar-H), 7.40-7.55 (m, 6H, p-Ar-H), 7.25-7.29 (m,3H, m-Ar-H), 6.30 (d, 1H, H-1?), 6.13 (m, 1H, H-2?), 4.95-5.01 (t, 2H, H-3? & 4?), 4.75 (t, 2H, -CH2), 3.55 (s, 3H, NCH3). 13C NMR (100 MHz, DMSO-d6, ppm) 165.1, 153.9, 151.2, 150.8, 135.0, 134.1, 133.0, 129.0, 128.2, 108.4, 90.2, 79.3, 30.1. MS (ES+) m/z: 687-689 (81Br). Anal. calcd. for C32H25BrN4O9: C, 55.74; H, 3.65; Br, 11.59; N, 8.13. Found: C, 55.81; H, 3.71; Br, 11.65; N, 8.15. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91% | Step 1 Commercially available 6,7-dimethoxyquinazoline-2,4(1H,3H)-dione (220 mg, 0.991 mmol) and 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (500 mg, 0.991 mol) were dissolved in acetonitrile (5 mL), and N,O-bis(trimethylsilyl)acetamide (0.735 mL, 2.97 mmol) was added thereto, and the mixture was stirred at 60 C. for 20 minutes. After the reaction solution was cooled to room temperature, methanesulfonyl trimethylsilyl (0.627 mL, 3.47 mmol) was added thereto, and the mixture was stirred at 60 C. for 1 hour. After the reaction solution was cooled to room temperature, a saturated aqueous sodium bicarbonate solution was added thereto, and the mixture was extracted with ethyl acetate. The organic layer was washed with saturated brine, and then dried over sodium sulfate. The residue obtained by evaporating the solvent under reduced pressure was purified by column chromatography (heptane/ethyl acetate) to obtain (2R,3R,4R,5R)-2-((benzoyloxy)methyl)-5-(6,7-dimethoxy-2,4-dioxo-3,4-dihydroquinazolin-1(2H)-yl)tetrahydrofuran-3,4-diyl dibenzoate (599 mg, yield: 91%). | |
91% | Step 1 Commercially available 6,7-dimethoxyquinazoline-2,4(1H,3H)-dione (220 mg, 0.991 mmol) and 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-D-ribofuranose (500 mg, 0.991 mmol) were dissolved in acetonitrile (5 mL), and N,O-bis(trimethylsilyl)acetamide (0.735 mL, 2.97 mmol) was added thereto, and the mixture was stirred at 60 C. for 20 minutes. After the reaction solution was cooled to room temperature, methanesulfonyl trimethylsilyl (0.627 mL, 3.47 mmol) was added thereto, and the mixture was stirred at 60 C. for 1 hour. After the reaction solution was cooled to room temperature, a saturated aqueous sodium bicarbonate solution was added thereto, and the mixture was extracted with ethyl acetate. The organic layer was washed with saturated brine, and then dried over sodium sulfate. The residue obtained by evaporating the solvent under reduced pressure was purified by column chromatography (heptane/ethyl acetate) to obtain (2R,3R,4R,5R)-2-((benzoyloxy)methyl)-5-(6,7-dimethoxy-2,4-dioxo-3,4-dihydroquinazolin-1(2H)-yl)tetrahydrofuran-3,4-diyl dibenzoate (599 mg, yield: 91%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | Compound 105: To a solution of compound 104 (2.8 g, 20 mmol) in dry acetonitrile (30 mL) was added BSA (21 g, 100 mmol, 5 eq). The reaction mixture was stirred at 60 C for 4 h and cooled to room temperature. To this reaction mixture were added compound 103 (10.1 g, 20 mmol), TMSOTf (10.8 mL, 60 mmol, 3eq), and the resulted reaction mixture was stirred at 60 C for 4 h. Upon completion of the reaction as monitored by TLC, the reaction mixture was treated with methylene chloride and saturated sodium bicarbonate. The organic phase was separated, and the aqueous phase was extracted with dichloromethane. The combined organic phase was dried over anhydrous Na2SO4. The drying agent was filtered off, and the filtrate was concentrated under reduced pressure. The crude product was purified by flash chromatography on a silica gel column giving 11 g desired compound 105 in 95% yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | Compound 110: To a solution of compound 109 (1.42 g, 10 mmol) in dry acetonitrile (30 mL) was added BSA (10.5 g, 50 mmol). The reaction mixture was stirred at 60 C for 4 h and cooled to room temperature. To the reaction mixture were added compound 103 (5.04 g, 10 mmol) and TMSOTf (2.7 mL, 15 mmol). The resulted reaction mixture was stirred at 60 C for 4 h. Upon completion of the reaction as monitored by TLC, the reaction mixture was treated with methylene chloride and saturated sodium bicarbonate. The organic phase was separated, and the aqueous phase was extracted with methylene chloride. The combined organic phase was dried over anhydrous Na2SO4. The drying agent was filtered off, and the filtrate was concentrated under reduced pressure. The crude product was purified by flash chromatography on a silica gel column giving 3.8 g desired compound 110 in 65% yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.5 mmol of 5-chloro-2,4-quinazolinedione was added to 20 mL of anhydrous acetonitrile, N.2Under the protection, 1.0 mL (4 mmol) of NO-BSA was added dropwise and reacted at 25 C for 2 h.(0.55 mmol) of 1-acetoxy-2,3,5-tribenzoyloxy-1-beta-D-ribofuranose and 0.2 mL (1.1 mmol) of TMSOTf were simultaneously added to the above solution, 50-60 C, reaction 20-24 h.The solvent was removed by steaming and saturated with NaHCO3And saturated aqueous solution of NaCl.Silica gel spin drying, column chromatography separation purification products.The product was a pale yellow solid. |
Tags: 6974-32-9 synthesis path| 6974-32-9 SDS| 6974-32-9 COA| 6974-32-9 purity| 6974-32-9 application| 6974-32-9 NMR| 6974-32-9 COA| 6974-32-9 structure
A1669910[ 54447-56-2 ]
(2S,3R,4R,5R)-2-Acetoxy-5-((benzoyloxy)methyl-13C)tetrahydrofuran-3,4-diyl dibenzoate
Reason: Stable Isotope
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H201 | Explosive; mass explosion hazard |
H202 | Explosive; severe projection hazard |
H203 | Explosive; fire, blast or projection hazard |
H204 | Fire or projection hazard |
H205 | May mass explode in fire |
H220 | Extremely flammable gas |
H221 | Flammable gas |
H222 | Extremely flammable aerosol |
H223 | Flammable aerosol |
H224 | Extremely flammable liquid and vapour |
H225 | Highly flammable liquid and vapour |
H226 | Flammable liquid and vapour |
H227 | Combustible liquid |
H228 | Flammable solid |
H229 | Pressurized container: may burst if heated |
H230 | May react explosively even in the absence of air |
H231 | May react explosively even in the absence of air at elevated pressure and/or temperature |
H240 | Heating may cause an explosion |
H241 | Heating may cause a fire or explosion |
H242 | Heating may cause a fire |
H250 | Catches fire spontaneously if exposed to air |
H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
Sorry,this product has been discontinued.
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