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[ CAS No. 1611493-60-7 ] {[proInfo.proName]}

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Chemical Structure| 1611493-60-7
Chemical Structure| 1611493-60-7
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Product Details of [ 1611493-60-7 ]

CAS No. :1611493-60-7 MDL No. :MFCD31536971
Formula : C21H18F3N3O5 Boiling Point : -
Linear Structure Formula :- InChI Key :SOLUWJRYJLAZCX-LYOVBCGYSA-N
M.W : 449.38 Pubchem ID :90311989
Synonyms :
Chemical Name :(2R,5S,13aR)-8-Hydroxy-7,9-dioxo-N-(2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazepine-10-carboxamide

Calculated chemistry of [ 1611493-60-7 ]

Physicochemical Properties

Num. heavy atoms : 32
Num. arom. heavy atoms : 12
Fraction Csp3 : 0.38
Num. rotatable bonds : 4
Num. H-bond acceptors : 8.0
Num. H-bond donors : 2.0
Molar Refractivity : 107.13
TPSA : 100.87 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : No
P-gp substrate : No
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : Yes
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -7.1 cm/s

Lipophilicity

Log Po/w (iLOGP) : 2.43
Log Po/w (XLOGP3) : 2.73
Log Po/w (WLOGP) : 2.36
Log Po/w (MLOGP) : 1.65
Log Po/w (SILICOS-IT) : 2.23
Consensus Log Po/w : 2.28

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 0.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -4.36
Solubility : 0.0196 mg/ml ; 0.0000437 mol/l
Class : Moderately soluble
Log S (Ali) : -4.5
Solubility : 0.0141 mg/ml ; 0.0000314 mol/l
Class : Moderately soluble
Log S (SILICOS-IT) : -4.65
Solubility : 0.00999 mg/ml ; 0.0000222 mol/l
Class : Moderately soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 0.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 4.87

Safety of [ 1611493-60-7 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P280-P301+P312-P302+P352-P305+P351+P338 UN#:N/A
Hazard Statements:H302-H315-H319-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 1611493-60-7 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 1611493-60-7 ]

[ 1611493-60-7 ] Synthesis Path-Downstream   1~19

  • 2
  • [ 1616340-94-3 ]
  • [ 1611493-60-7 ]
YieldReaction ConditionsOperation in experiment
85% With lithium bromide; In tetrahydrofuran; at 60℃;Flow reactor; A solution of (2R,5 S, l3aR )-8-methoxy -7 ,9-dioxo-N -(2,4,6-trifluorobenzyl)- 2, 3, 4, 5, 7,9, 13, l3a-octahydro-2,5-methanopyrido[r,2':4,5]pyrazino[2, l- b][l,3]oxazepine-l0-carboxamide (lie) (75g,0.237moles) in THF was then introduced in a Tube Flow Reactor and demethylated with Lithium bromide (30.98g, 0.356 moles) in THF at temperature of 60C. After a residence time of 15 mins, the reaction mass was cooled to RT, treated with 10% Aq. HC1 solution and extracted in dichloromethane. The organic layer was concentrated & solid was isolated in isopropyl alcohol to yield Compound (III). (0330) HPLC purity > 98.0% (0331) Yield > 85%w/w
With magnesium bromide; In acetonitrile; at 50℃; for 0.166667h; Step 4 To the crude reaction mixture of the previous step was added MgBr2 (0.258 g, 1.40 mmol). The reaction mixture was stirred at 50 C for 10 minutes, acidified with 10% aqueous HC1, and extract twice with dichloromethane. The combined organic phases were dried over MgS04, filtered, concentrated, and purified by silica gel chromatography (EtOH/dichlormethane) followed by HPLC (ACN H2O with 0.1 % TFA modifier) to afford compound 42: 1H~ M (400 MHz, DMSO-</6) delta 12.43 (s, 1H), 10.34 (t, J = 5.7 Hz, IH), 8.42 (s, 1H), 7.19 (t, J = 8.7 Hz, 2H), 5.43 (dd, ./' 9.5, 4.1 Hz, I H), 5.08 (s, i l l ). 4.66 (dd, ./ 12.9, 4.0 Hz, IH), 4.59 (s, 1 1 1 ). 4.56 4.45 (m, 2H), 4.01 (dd, J = 12.7, 9.7 Hz, IH), 1.93 (s, 4H), 1.83 (d, J ------ 12.0 Hz, I H), 1.56 (dt, J = 12.0, 3.4 Hz, I H). LCMS-ESI+ (m/z): [M+H]+ calculated for { · FontWeight="Bold" FontSize="10" ] NuGamma :Chi. : 450.13; found: 450.2.
With lithium chloride; In 1-methyl-pyrrolidin-2-one; dichloromethane; at 75℃; for 2.5h; Formula I Form III from Compound G-1aA solution of about 10% (w/w) Compound G-1a (2.5 g Compound 1001) in methylene chloride was concentrated to a residue under vacuum. LiCl (2.6 g, 7 equiv) followed by N-methyl-2-pyrrolidone (12.5 mL) was added to the resulting residue. The method of preparing compound G1-a can be determined by one skilled on the art, for example, as described in co-pending PCT Serial No. US2013/076367, filed Dec. 19, 2013 entitled, ?POLYCYCLIC-CARBAMOYLPYRIDONE COMPOUNDS AND THEIR PHARMACEUTICAL USE.? The mixture was heated to an internal temperature of approximately 75 C. After 2.5 hours, the reaction was cooled to approximately 20 C. Dichloromethane (12.5 mL) and 0.5M hydrochloric acid (12.5 mL) was added, and the resulting mixture stirred for 5 minutes. The phases were separated, and the organic layer was washed with 10% aqueous sodium chloride solution (twice) followed by water. This solution was concentrated while gradually adding 3 volumes of isopropyl alcohol portionwise (40 C. bath temperature, 200-230 torr vacuum). The resulting slurry was slowly cooled to 2-4 C. The product was filtered and deliquored and dried. Formula I Form III was isolated and characterized as discussed below.
  • 3
  • [ 1616340-75-0 ]
  • [ 1611493-60-7 ]
  • 5
  • [ 1611493-60-7 ]
  • potassium (2R,5S,13aR)-7,9-dioxo-10-((2,4,6-trifluorobenzyl)carbamoyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1′,2′:4,5]pyrazino[2,1-b][1,3]oxazepin-8-olate [ No CAS ]
YieldReaction ConditionsOperation in experiment
With potassium acetate; In methanol; at 20℃; Formula III Form I 406 mg of (2R,5S,13aR)-8-hydroxy-7,9-dioxo-N-(2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1?,2?:4,5]pyrazino[2,1-b][1,3]oxazepine-10-carboxamide (25.2 mg) was combined with 200 mg potassium acetate and 5 mL of methanol at room temperature, resulting in a suspension. A sample of the suspension was filtered the next day for testing. After several days, solids suitable for single crystal X-ray crystallography were found in the filtrate and analyzed.
  • 6
  • [ 1611493-60-7 ]
  • sodium (2R,5S,13aR)-7,9-dioxo-10-((2,4,6-trifluorobenzyl)carbamoyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1‘,2’:4,5]pyrazino[2,1-b][1,3]oxazepin-8-olate [ No CAS ]
YieldReaction ConditionsOperation in experiment
With sodium hydroxide; In ethanol; water; at 20 - 75℃; for 1.5h; Formula II Form I (2R,5S,13aR)-8-hydroxy-7,9-dioxo-N-(2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1?,2?:4,5]pyrazino[2,1-b][1,3]oxazepine-10-carboxamide (20 g) and ethanol (80 mL) were added to a reaction vessel and warmed to about 75 C. Aqueous sodium hydroxide (22 mL 2 M solution) was added over approximately 30 minutes, after which the slurry was cooled to approximately 20 C. over approximately one hour. Sodium (2R,5S,13aR)-7,9-dioxo-10-((2,4,6-trifluorobenzyl)carbamoyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1?,2?:4,5]pyrazino[2,1-b][1,3]oxazepin-8-olate Form I was collected by filtration, washed with EtOH (50 mL) and dried under vacuum. 1H NMR (400 MHz, DMSO-d6) delta 10.63 (t, J=5.8 Hz, 1H), 7.88 (s, 1H), 7.29-7.07 (m, 2H), 5.20 (dd, J=8.6, 3.6 Hz, 1H), 5.09 (t, J=4.1 Hz, 1H), 4.52 (m, 3H), 4.35 (dd, J=12.8, 3.6 Hz, 1H), 3.87 (dd, J=12.7, 8.7 Hz, 1H), 2.03-1.80 (m, 3H), 1.76-1.64 (m, 2H), 1.50-1.40 (m, 1H).
With sodium hydroxide; In ethanol; water; at 20 - 75℃; for 1.5h; Synthesis sodium <strong>[1611493-60-7](2R,5S,13aR)-7,9-dioxo-10-((2,4,6-trifluorobenzyl)carbamoyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazepin-8-olate</strong> (Formula II) <strong>[1611493-60-7](2R,5S,13aR)-8-hydroxy-7,9-dioxo-N-(2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazepine-10-carboxamide</strong> (20 g) and ethanol (80 mL) were added to a reaction vessel and warned to about 75 C. Aqueous sodium hydroxide (22 mL 2 M solution) was added over approximately 30 minutes, after which the slurry was cooled to approximately 20 VC over approximately one hour. Sodium (2R,5SJ aR)-7,9-dioxo-I 0-((2,4,6- trifinorobenzyl)earhamoyI)-2.3 ,4, 5 ,7, , 13 , 13 a-octahydro-2, 5- metianopyrido[r,2,:4,5]pyfazino[2, l-b][l,33oxii7j pii-8-o[ate Form was collected by filtration, washed with EtO.H (50 mL) and dried under vacuum.5H NMR (400 MHz, DMSOd6) delta 10.63 (t, J = 5.8 Hz, 1H), 7.88 (s, 1H), 7.29 (0272) - 7.07 (m, 2H), 5.20 (dd, J~ 8.6, 3.6 Hz, 1H), 5.09 (t, J::: 4.1 Hz, I H), 4.52 (m, 311), 4.35 (dd, J- 12.8, 3.6 Hz, 1H)9 3.87 (dd, J= 12.7, .7 Hz, 1H), 2.03 - I.JO (m, 311), 1.76-1.64 (m, 2H), 1.50 - 1.40 (m, 1 H),
65 g With sodium hydroxide; In methanol; water; at 25 - 30℃; The recrystallized Bictegravir was dissolved in 500 ml methanol at 60-65C in a separate reaction flask. In another reaction flask 4.5 g sodium hydroxide was dissolved in 500 ml water at room temperature. Hot methanol solution was added into aq. sodium hydroxide solution slowly within 2-3 hours at room temperature and the crystallized solid suspension was stirred for 1 hour. The product was filtered, washed with 250 ml of water and then dried at 50-55C under reduced pressure for 15-20 hours to obtain Bictegravir Sodium.Yield: 65g
With methanol; sodium hydroxide; In dichloromethane; at 25℃;Flow reactor; A solution of Compound (III) (lOg, 0.022 moles) in MDC was mixed with a solution of sodium hydroxide (7. l2g,0. l78 moles) in methanol in Tube Flow Reactor at 25C with residence time of 10 mins to give Sodium salt of Compound (III). Particle size : d90 NMT 15 pm.
With sodium hydroxide; In 2,2,2-trifluoroethanol; water; at 0℃; for 4h; Bictegravir (1.50 g, e.g. prepared according to Example 42 of WO 2014/100323 Al) was dissolved in trifluoroethanol (30 mL) upon heating to 65 C. To the solution aqueous NaOH (1M, 3.6 mL) was dropwise added. Thereafter, the solution was cooled to 0 C in 4 hours, whereupon crystallization was observed at a temperature of approximately 40 C. The obtained suspension was further stirred at 0 C for 3 hours, before the crystals were collected by filtration and dried under vacuum (30 mbar) at 50 C for 15 hours to obtain crystalline Form II of bictegravir sodium (1.30 g).

  • 7
  • [ 1611493-60-7 ]
  • [ 77-92-9 ]
  • C21H18F3N3O5*2C6H8O7 [ No CAS ]
YieldReaction ConditionsOperation in experiment
In tetrahydrofuran; at 21℃; for 48h; Formula I Citric Acid Co-Crystal Form I (2R,5 S,13 aR)-8-hydroxy-7,9-dioxo-N-(2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1?,2?:4,5]pyrazino[2,1-b][1,3]oxazepine-10-carboxamide (131 mg) and citric acid (148 mg) were added to a glass vial. Tetrahydrofuran (1 mL) was added, the vial was capped, and the mixture was stirred at about 21 C. for two days. The vial was vented and the solvent was allowed to evaporate at about 21 C. unassisted. After eight weeks at room temperature, crystals were found in the vessel and were identified as a 1:2 Formula I citric acid co-crystal.
  • 8
  • [ 1611493-60-7 ]
  • [ 110-17-8 ]
  • C21H18F3N3O5*C4H4O4 [ No CAS ]
YieldReaction ConditionsOperation in experiment
In tetrahydrofuran; at 21 - 45℃; for 60h; Formula I Fumaric Acid Co-crystal Form I (2R,5S,13aR)-8-hydroxy-7,9-dioxo-N-(2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1?,2?:4,5]pyrazino[2,1-b][1,3]oxazepine-10-carboxamide (131 mg) and fumaric acid (103 mg) were added to a glass vial. Tetrahydrofuran (1 mL) was added, the vial capped, and the suspension stirred at about 21 C. for two days. An additional 1 mL of tetrahydrofuran was added, and the mixture was heated to 45 C. After about 12 hours at 45 C. the mixture was found to be fully dissolved and was removed from the heat bath. The vial was vented, and the solvent left to evaporate at room temperature. After one day solids were observed in the vial and it was re-capped. After eight weeks large crystals were found in the capped vial and identified as a 1:1 Formula I fumaric acid co-crystal.
  • 9
  • [ 1611493-60-7 ]
  • [ 144-62-7 ]
  • C21H18F3N3O5*C2H2O4 [ No CAS ]
YieldReaction ConditionsOperation in experiment
In tetrahydrofuran; at 21℃; for 48h; Formula I Oxalic Acid Co-crystal Form I (2R,5 S,13 aR)-8-hydroxy-7,9-dioxo-N-(2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1?,2?:4,5]pyrazino[2,1-b][1,3]oxazepine-10-carboxamide (147 mg) and oxalic acid (134 mg) were added to a glass vial. Tetrahydrofuran (1 mL) was added, the vial capped, and the resulting solution was stirred at about 21 C. for about two days. The vessel was vented, and the solvent was allowed to evaporate at room temperature unassisted. After one day solids were observed in the vial and it was re-capped. Two days later large crystals were found in the vial and were identified as a 1:1 Formula I oxalic acid co-crystal.
  • 10
  • [ 214759-21-4 ]
  • C14H14N2O6 [ No CAS ]
  • [ 1611493-60-7 ]
YieldReaction ConditionsOperation in experiment
65 g 50 g of compound (1) was charged along with 500 ml of dimethyl carbonate followed by 52 g of N, N?-Carbonyl Diimidazole. The reaction mass was heated at 40-50C and maintained for 5 hours and then cooled to room temperature. 39.4 g of compound (6) was added to the reaction mass and stirred for 1 hour. 500 ml of water added to the reaction mass and extracted with 500 ml ethyl acetate. Then back extracted with ethyl acetate 500 ml one more time and washed combined organic layer with 50 ml iN HC1. The organic layer was washed with saturated sodium bicarbonate solution 250 ml followed by water 500 ml. The layer was partially concentrated, filtered and then the filtrate was distilled out completely. 150 ml of methanol was added to the residue and heated to 45-50C and maintained for 1 hour. Then cooled to 0-10C, filtered and washed with chilled methanol 50 ml and finally recrystallized from methanol to obtain Bictegravir.Yield-65 gHPLC Purity: > 99.5 %
  • 11
  • [ 1110772-05-8 ]
  • [ 1611493-60-7 ]
  • 12
  • [ 1611493-60-7 ]
  • [ 21085-72-3 ]
  • C34H34F3N3O14 [ No CAS ]
YieldReaction ConditionsOperation in experiment
75% With silver carbonate; In acetonitrile; at 60℃; Anomeric bromination of 1 with 33% HBr in acetic acid gave bromide 2 in 70% crystallized yield. Treatment of phenol 3 with bromide 2 in the presence of Ag2CO3in acetonitrile at 60 C. produced compound 4 in 75% yield after reverse phase chromatography. Deprotection of 4 with triethylamine in methanol/water gave clean conversion to glucuronic acid 5 (M15). The reaction was stopped at 90% conversion since the amount of 3 present in the reaction started to increase. The mixture was purified by reverse phase chromatography with 0.1% TFA in the chromatography solvent. The free acid was isolated after lyophilization, however it contained a significant amount of 3. It was discovered that the free acid 5 was unstable in either neutral oracidic conditions. The triethylamine salt of M15 (5) appeared to be stable. Another batch was purified using the same method as before but the TFA was neutralized with triethylamine before lyophilization. The compound was stable to the conditions but contained a large amount of triethylammonium trifluoroacetate. Not all salt was removed. The material was purified by reverse phase chromatography but without TFA in the solvent. After lyophilization the triethylamine salt of M15 (5) was isolated in high purity and 24% overall yield.
  • 13
  • 5-methoxy-6-(methoxycarbonyl)-4-oxo-1-(2-oxoethyl)-1,4-dihydropyridine-3-carboxylic acid [ No CAS ]
  • [ 1611493-60-7 ]
  • 14
  • methyl (Z)-2-((dimethylamino)methylene)-4-methoxy-3-oxobutanoate [ No CAS ]
  • [ 1611493-60-7 ]
  • 15
  • methyl (Z)-2-(((2,2-dimethoxyethyl)amino)methylene)-4-methoxy-3-oxobutanoate [ No CAS ]
  • [ 1611493-60-7 ]
  • 16
  • 1-(2,2-dimethoxy-ethyl)-3-methoxy-4-oxo-1,4-dihydro-pyridine-2,5-dicarboxylic acid dimethyl ester [ No CAS ]
  • [ 1611493-60-7 ]
  • 17
  • [ 75-89-8 ]
  • [ 1611493-60-7 ]
  • (2R,5S,13aR)-7,9-dioxo-10-((2,4,6-trifluorobenzyl)carbamoyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1',2’:4,5]pyrazino[2,1-b][1,3]oxazepin-8-olate sodium 2,2,2-trifluoroethanol solvate [ No CAS ]
YieldReaction ConditionsOperation in experiment
With sodium hydroxide; In water; at 65℃; for 2h; (0212) Bictegravir (0.5 g, e.g. prepared according to Example 42 of WO 2014/100323 Al) was dissolved in trifluoroethanol (10 mL) upon heating to 70 C. To the solution aqueous NaOH (1M, 1.22 mL) was added and the solution was further stirred at 65 C for two hours. Thereafter, the solution was allowed to cool to room temperature, whereupon a suspension was obtained. The suspension was further stirred at room temperature for 5 hours before the crystals were collected by centrifugation in order to obtain bictegravir sodium trifluoroethanol solvate.
  • 18
  • [ 214759-21-4 ]
  • [ 1611493-60-7 ]
  • 19
  • lithium (2R,5S,13aR)-7,9-dioxo-10-((2,4,6-trifluorobenzyl)carbamoyl)-2,3,4,5,7,9,13,13a-octahydro-2,5-methanopyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazepin-8-olate [ No CAS ]
  • [ 1611493-60-7 ]
YieldReaction ConditionsOperation in experiment
78% With hydrogenchloride; In methanol; water; at 20 - 30℃; for 1h;pH 2 - 3; Charged Lithium (2R,5S,l3aR)-7,9-dioxo-l0-((2,4,6-trifluorobenzyl) carbamoyl)- 2,3,4,5,7,9,l3,l3a-octahydro-2,5-methanopyrido[l',2':4,5]pyrazino[2,l-b] [1,3] oxazepin-8- olate and Methanol(l60 ml). Reaction mass pH was adjusted to 2.0 to 3.0 with Cone HC1 at 20-30C, stirred for 1 hour and concentrated. Concentrated mass was diluted with methanol (160 ml) and heated to 60-65 C, stirred for 1 hour, cooled to 0-5 C and stirred for 4 hours to crystallize the product. The product was filtered, washed with chilled methanol and dried to yield the title compound.Yield- 78%; Purity by HPLC (by chromatography): 99.44%.
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Chemical Structure| 1807988-02-8

A1006402[ 1807988-02-8 ]

Bictegravir sodium

Reason: Free-salt