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CAS No. : | 106719-44-2 | MDL No. : | MFCD00076956 |
Formula : | C11H22N2O4 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | DQUHYEDEGRNAFO-MRVPVSSYSA-N |
M.W : | 246.30 | Pubchem ID : | 7018770 |
Synonyms : |
|
Chemical Name : | Boc-D-Lys-OH |
Num. heavy atoms : | 17 |
Num. arom. heavy atoms : | 0 |
Fraction Csp3 : | 0.82 |
Num. rotatable bonds : | 9 |
Num. H-bond acceptors : | 5.0 |
Num. H-bond donors : | 3.0 |
Molar Refractivity : | 63.98 |
TPSA : | 101.65 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -8.93 cm/s |
Log Po/w (iLOGP) : | 2.01 |
Log Po/w (XLOGP3) : | -1.59 |
Log Po/w (WLOGP) : | 1.09 |
Log Po/w (MLOGP) : | 0.61 |
Log Po/w (SILICOS-IT) : | 0.29 |
Consensus Log Po/w : | 0.48 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | 0.23 |
Solubility : | 417.0 mg/ml ; 1.69 mol/l |
Class : | Highly soluble |
Log S (Ali) : | -0.04 |
Solubility : | 227.0 mg/ml ; 0.921 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -1.52 |
Solubility : | 7.44 mg/ml ; 0.0302 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 2.0 |
Synthetic accessibility : | 2.89 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With sodium hydroxide In 1,4-dioxane; water at 0 - 20℃; for 16.5 h; | N6-((benzyloxy)carbonyl)-N2-(tert-butoxycarbonyl)-D-lysine (29) To a 1M aqueous solution of NaOH (37 mLat rt were added Z-D-Lys(Boc)-OH (3.00 g, 12.2) and dioxane slowly until the suspension dissolves. Then benzyl chloroformate was added (2.70 g, 2.3 15.9) dropwise over a period of 30 min at 0 C. The reaction mixture was stirred for 16 h at room temperature. Furthermore dioxane was removed in vacuo and reaction mixture was acidified to pH 2 with 1M HCl at 0 C. The aqueous layer was extracted with EtOAc. The combined organic layers were dried over Na2S04, filtered and evaporated in vacuo to afford compound 29 (4.4, 11.6 mmol, 95percent) as a white foam. No further purification was required. 1H-NMR (360 MHz, CDC13): δ (ppm) 7.37-7.23 (m, 5H), 6.18 (br s, 1H), 5.17- 4.86 (m, 3H), 4.83 (s, 1H), 4.22-4.04 (m, 1H), 3.13-3.11 (m, 2H), 1.76-1.37 (m, 15H). 13C- NMR (150 MHz, CDC13): δ (ppm) 176.4 (CO), 156.8 (CO), 156.0 (CO), 136.6 (Cq), 128.7 (2 x CH), 128.3 (2 x CH), 128.1 (CH), 80.4 (Cq) 66.9 (CH2), 53.3 (CH), 40.7 (CH2), 32.0 (CH2), 29.3 (CH2), 29.5 (3 x CH3), 22.1 (CH2). MS (ESI) m/z (percent): (Ci4H2oN204) 222 (14), (C7Hi2N04) 174 (12), 128 (32), 108 (27), 92 (11), (C7H7) 91 (100), 84 (20), 57 (52), 41 (20). MS (ESI) m/z calcd for Ci4H2oN204 [M + H - C5H902]+, 280.14; found 280.14. LC-MS (ESI) m/z calcd. for Ci9H28N206Na [M+Na]+, 403.2; found, 403.7. HPLC purity, 96percent, tR = 19.7 min, gradient A. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 4; Synthesis of D-Boc-a-amino-e-caprolactam; In a 1L round bottom flask under a nitrogen atmosphere is placed 20 g (80 mmol) of N-a-Boc-D-lysine with 300 mL of DMF and a magnetic stir bar. 36 g of BOP is added to the room temperature slurry. The reaction is stirred for 15 minutes until clear. Then 36 g of NaHCO3 and 100 mL of DMF are added. After 20 hours, the reaction mixture is concentrated under vacuum. The concentrated mixture is diluted with water and aqueous NaHCO3 solution (1: 1) and extracted three times with ethyl acetate. The combined organic extracts are washed with water, saturated aqueous NaHCO3 solution, saturated aqueous NaCl solution, dried (Na2SO4), filtered and concentrated to afford a residue. The residue is triturated with ether (20 mL) and filtered. Washing the precipitate with hexanes led to another crop in the filtrate. A final crop is obtained by concentrating of the second filtrate and treatment with hexanes. Combining all crops affords the desired cyclized product. MS: 229 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 1; Synthesis of D-Boc-alpha-amino-epsilon-caprolactam; In a IL round bottom flask under a nitrogen atmosphere is placed 20 g (80 mmol) of N-alpha-Boc-D-lysine with 300 mL of DMF and a magnetic stir bar. 36 g of BOP is added to the room temperature slurry. The reaction is stirred for 15 minutes until clear. Then 36 g of NaHCO3 and 100 mL of DMF are added. After 20 hours, the reaction mixture is concentrated under vacuum. The concentrated mixture is diluted with water and aqueous NaHCO3 solution (1:1) and extracted three times with ethyl acetate. The combined organic extracts are washed with water, saturated aqueous NaHCO3 solution, saturated aqueous NaCl solution, dried (Na2SO4), filtered and concentrated to afford a residue. The residue is triturated with ether (20 mL) and filtered. Washing the precipitate with hexanes led to another crop in the filtrate. A final crop is obtained by concentrating of the second filtrate and treatment with hexanes. Combining all crops affords the desired cyclized product. MS: 229 (M+H); Procedure for synthesis of D-alpha-amino-epsilon-caprolactam HCl; The D-Boc-alpha-amino-epsilon-caprolactam (12 g, 52 mmol) is mixed with 130 mL of dioxane to form a cloudy solution. 30 mL of 4N HCl in dioxane is added and gas evolution is noted. After 2 hours, HPLC-MS shows incomplete reaction. Methanol (20 mL) and an additional 20 mL of 4N HCl in dioxane solution are added and stirring continued overnight. The resulting EPO <DP n="79"/>solid was filtered and dried in a vacuum oven to yield 8.85 g of the desired product. Chiral HPLC analysis showed no racemization. MS: 129 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Steps 1 through 13 were then repeated employing the following sequence of amino acids: Boc--D--Trp Boc--D--Trp Boc--Tyr(BrZ*) Boc--D--Lys(Z+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 10 iV6.(iV-[4.((2R,3R)-l-(4-fluorophenyl)-3-[2-(4-fluorophenyl)-2-hydroxyethyl]thio}-4- 15 oxoazetidin-2-yl)phenoxy]acetyI}gIycyl)-D-lysineTo a 30 0C solution of N-[4-((2i?,3i?)-l-(4-fluorophenyl)-3-[2-(4-fluorophenyl)-2- oxoethyl]thio}-4-oxoazetidin-2-yl)phenoxy]acetyl}glycine (0.030g, 0.055 mmol) in CH2Cl220 (5 ml) under an atmosphere of nitrogen was added N-methylmorpholine (0.017 g, 0.166 mmol) followed by the addition of TBTU (0.023 g, 0.072 mmol). After 1.5h N2-{tert- butoxycarbonyl)-D-lysine (0.027 g, 0.111 mmol) was added. After 30 minutes full conversion to the corresponding amide had been obtained. The mixture was concentrated and the residue was purified through preparative HPLC using an eluent of 0-50% CH3CN in 0.1M NH4OAc25 buffer. Pure fractions were concentrated. To the residue was added trifluoroacetic acid (4 ml) and CH2Cl2 (2 ml). After 10 minutes, full deprotection of the Boc protective group had been achieved. The mixture was concentrated and to the residue was added MeOH (3 ml) and NaBH4 (0.010 g, 0.277 mmol). Full conversion to the desired alcohol had been obtained within 5 minutes. The mixture was purified through preparative HPLC using an eluent of 20-30 50% CH3CN in 0.1M NH4OAc as eluent. Freeze drying of pure fractions afforded the desired compound. 1H NMR [(CD3)2SO), 400 MHz] deltal.26-1.73 (m, 6H), 2.85-3.09 (m, 5H), 3.70 (d, 2H), 4.25-4.28 (m, IH), 4.53 (s, 2H), 4.68-4.75 (m, IH), 5.04-5.07 (m, IH), 6.97-7.38 (m, 12H), 7.87 (t, IH), 8.30 (t, IH). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | With triethylamine; In dichloromethane; at 20℃; for 16h; | Preparation of (R)-6-[2,3-bis(tert-butoxycarbonyl)guanidino]-2-[(tert-butoxycarbonyl)amino]hexanoic acid (8) A solution of N-alpha-Boc-D-lysine 12 (10.0 g, 40.6 mmol) in CH2Cl2 (200 mL) was charged with N,N'-bis-Boc-1-guanylpyrazole (11.3 g, 36.6 mmol) and triethylamine (11.0 mL, 81.3 mmol). The reaction mixture was stirred at room temperature for 16 h. The reaction mixture was washed with 10% aqueous citric acid (2*100 mL) and the solvent was removed under reduced pressure. The residue was dissolved in 1 N NaOH (300 mL), 1 N HCl was added to adjust the pH to 5-6, and the mixture was extracted with CH2Cl2 (500 ml). The CH2Cl2 layer was separated and the aqueous layer was extracted with CH2Cl2 (2*250 mL). The combined organic layers were dried over Na2SO4, filtered, and concentrated to afford compound 8 (18.5 g, 94%) as a white solid: 1H NMR (400 MHz, CD3OD) delta 4.13-4.03 (m, 1H), 3.36 (t, J=6.8 Hz, 2H), 1.91-1.77 (m, 1H), 1.74-1.55 (m, 3H), 1.52 (s, 9H), 1.51-1.38 (m, 2H), 1.47 (s, 9H), 1.43 (s, 9H). |
22 g | To a solution of N-alpha-Boc-D-lysine (13.0 g, 52.7 mmol) in EtOH (290 mL) was added N,N'-bis-Boc-1-guanylpyrazole (16.3 g, 52.7 mmol) and triethyl amine (10.6 g, 105 mmol). The reaction mixture was stirred at room temperature for 6 h. Solvent was removed and the residue was purified by column chromatography (silica gel, 10:1 CH2Cl2/MeOH) to afford a pyrazole salt (25.0 g) as colorless oil. _The salt was dissolved in 1 N NaOH (300 mL) and neutralized with 1 N HCl (305 mL) The resulting precipitate was filtered out and dried, to afford compound 3 (22.0 g, 85%) as a white solid: 1H NMR (400 MHz, CDCl3) delta 11.48 (br s, 1H), 8.35 (br s, 1H), 5.23 (d, J=7.5 Hz, 1H), 4.23 (br s, 1H), 3.48-3.25 (m, 2H), 1.96-1.50 (m, 6H), 1.51 (s, 9H), 1.49 (s, 9H), 1.43 (s, 9H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In methanol; hexane; dichloromethane; at 0 - 20℃; for 2h; | A solution of N-alpha-Boc-D-lysine 12 (1.00 g, 4.06 mmol) in CH2Cl2 (20 mL) and MeOH (5.0 mL) was charged with TMS-diazomethane [(CH3)3SiCHN2 0.6 M solution in hexane, 13.5 mL, 8.12 mmol] at 0 C. and stirred at the same temperature for 1 h and at room temperature for another 1 h. The solvent was removed under reduced pressure to afford crude product 14 (1.04 g, crude) as a yellow oil, which was directly used for the next step without further purification: 1H NMR (400 MHz, CD3OD) delta 4.12-4.05 (m, 1H), 3.70 (s, 3H), 2.62 (t, J=7.0 Hz, 2H), 1.82-1.70 (m, 1H), 1.69-1.58 (m, 1H), 1.54-1.32 (m, 4H), 1.43 (s, 9H). | |
In methanol; hexane; dichloromethane; at 20℃; for 0.833333h; | BOC-D-LYS-OH 4a (8 g, 32 5 mmol) was dissolved in dichloromethane/methanol (10: 1, 110 mL). TMS-Diazomethane (2M in hexanes, 20 mL, 40 mmol) was added dropwise and the reaction mixture was stirred for 50 minutes at room temperature. The reaction was quenched with dropwise addition of acetic acid until the reaction mixture became colorless. The reaction was then concentrated and carried forward without purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
64% | With N-ethyl-N,N-diisopropylamine; In methanol; at 20℃; for 192h; | [00216j Synthesis of compound 12.1: A mixture of N-Boc-D-Lysine 11.1 (49.2 g, 0.2 mole) and the epoxide 5.1 (147.2 g, 0.8 mole) in MeOH (1.04 L) was stirred at room temperature. DIPEA (51.9 g, 0.4 mole) was added. The resulting mixture was then stirred for 8 days, and then concentrated to dryness. The residue was purified on a silica gel column (2 kg, MeOH/DCM, 0 to 10%) to give 49.2 g of mostly pure 12.1 (MZ-550-180) and 58.3 g of impure 12.1, which was purified by a second column (1.5 kg, MeOH/EtOAc, 10 to 40%) to give 41.4 g of mostly pure 12.1. The two mostly pure batches were combined and stirred with EtOAc (0.5 L) for 3 h. The mixture was filtered to give 41.4 g pure 12.1 as a white solid. The filtrate was concentrated to dryness. The residue was stirred with EtOAc (0.1 L) for lh and filtered to give 10.6 g of pure 12.1. The filtrate was concentrated to dryness and the residue was purified on a silica gel column (330 g, MeOH/EtOAc, 10 to 40%) to give a third batch of 26.9 g pure 12.1. Atotal of 78.9 g of pure 12.1 was obtained. Yield: 64% |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With triethylamine; In methanol; at 20℃; for 168h; | [00206j Synthesis of compound 10.2: To a suspension of 11.1, Boc-D-lysine (14 g, 0.057 mol) in MeOH (900 mL) were added TEA (11.6 mL) and 5.2 (42 g, 0.228 mol). The mixture was stirred at room temperature for 7 days. Volatiles were removed and the crude product was purified by column (1.0 kg of 5i02, eluted with 0 - 40% MeOH in EtOAc) to give 24 g (70%) of pure compound 10.2. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With sodium hydroxide; In 1,4-dioxane; water; at 0 - 20℃; for 16.5h; | N6-((benzyloxy)carbonyl)-N2-(tert-butoxycarbonyl)-D-lysine (29) To a 1M aqueous solution of NaOH (37 mLat rt were added Z-D-Lys(Boc)-OH (3.00 g, 12.2) and dioxane slowly until the suspension dissolves. Then benzyl chloroformate was added (2.70 g, 2.3 15.9) dropwise over a period of 30 min at 0 C. The reaction mixture was stirred for 16 h at room temperature. Furthermore dioxane was removed in vacuo and reaction mixture was acidified to pH 2 with 1M HCl at 0 C. The aqueous layer was extracted with EtOAc. The combined organic layers were dried over Na2S04, filtered and evaporated in vacuo to afford compound 29 (4.4, 11.6 mmol, 95%) as a white foam. No further purification was required. 1H-NMR (360 MHz, CDC13): delta (ppm) 7.37-7.23 (m, 5H), 6.18 (br s, 1H), 5.17- 4.86 (m, 3H), 4.83 (s, 1H), 4.22-4.04 (m, 1H), 3.13-3.11 (m, 2H), 1.76-1.37 (m, 15H). 13C- NMR (150 MHz, CDC13): delta (ppm) 176.4 (CO), 156.8 (CO), 156.0 (CO), 136.6 (Cq), 128.7 (2 x CH), 128.3 (2 x CH), 128.1 (CH), 80.4 (Cq) 66.9 (CH2), 53.3 (CH), 40.7 (CH2), 32.0 (CH2), 29.3 (CH2), 29.5 (3 x CH3), 22.1 (CH2). MS (ESI) m/z (%): (Ci4H2oN204) 222 (14), (C7Hi2N04) 174 (12), 128 (32), 108 (27), 92 (11), (C7H7) 91 (100), 84 (20), 57 (52), 41 (20). MS (ESI) m/z calcd for Ci4H2oN204 [M + H - C5H902]+, 280.14; found 280.14. LC-MS (ESI) m/z calcd. for Ci9H28N206Na [M+Na]+, 403.2; found, 403.7. HPLC purity, 96%, tR = 19.7 min, gradient A. |
[ 67861-96-5 ]
Dicyclohexylamine (S)-2-((tert-butoxycarbonyl)amino)pentanoate
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(S)-2-((tert-Butoxycarbonyl)amino)-3-cyclohexylpropanoic acid
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H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
Sorry,this product has been discontinued.
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