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CAS No. : | 931-86-2 | MDL No. : | MFCD00006033 |
Formula : | C3H4N4O | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | MFEFTTYGMZOIKO-UHFFFAOYSA-N |
M.W : | 112.09 | Pubchem ID : | 19956 |
Synonyms : |
5-Azacytosine
|
Chemical Name : | 6-Amino-1,3,5-triazin-2(1H)-one |
Num. heavy atoms : | 8 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 0 |
Num. H-bond acceptors : | 3.0 |
Num. H-bond donors : | 2.0 |
Molar Refractivity : | 27.06 |
TPSA : | 84.66 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.86 cm/s |
Log Po/w (iLOGP) : | 0.02 |
Log Po/w (XLOGP3) : | -1.23 |
Log Po/w (WLOGP) : | -1.24 |
Log Po/w (MLOGP) : | -2.13 |
Log Po/w (SILICOS-IT) : | 0.25 |
Consensus Log Po/w : | -0.87 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 2.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -0.32 |
Solubility : | 54.3 mg/ml ; 0.484 mol/l |
Class : | Very soluble |
Log S (Ali) : | -0.05 |
Solubility : | 99.3 mg/ml ; 0.886 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -0.77 |
Solubility : | 19.1 mg/ml ; 0.171 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.59 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | Stage #1: at 110℃; Autoclave; Large scale Stage #2: With hydrogenchloride In water for 0.5 h; Reflux; Large scale |
(1)To 10L autoclave followed by anhydrous formic acid (99.5percent) 1.5Kg,Dicyandiamide 2.5 Kg and p-toluenesulfonic acid catalyst (0.005 Kg). In sealed and stirred state,The reactor pressure and slowly warmed to 110 ,After the reaction,Slowly reduce the reaction temperature to room temperature,A white solid was obtained.(2)The white solid was transferred to a 50 L glass reaction kettle,Add 10L mass concentration of 5percent dilute hydrochloric acid.Heated to reflux for 30 minutes until the solution becomes clear,The mixture was filtered through a filter cartridge to the crystallizer,The filtrate was added 30percent aqueous ammonia in the crystallizer to adjust the pH to 6,Precipitation of white crystals,After centrifugation,After drying in a hot air oven, 5-azacytosine 2.8 kg (85percent yield based on dicyandiamide) was obtained. |
74 kg | Stage #1: at 50 - 110℃; Large scale Stage #2: at 100 - 110℃; for 2.75 h; Large scale |
140 kg of formic acid was charged into a reaction kettle,Turn on agitation,Twenty five kilograms of dicyandiamide,The reaction temperature will gradually increase,Control temperature below 60 ,The reaction temperature is no longer rising after the batch will be the remaining 75 kg of dicyandiamide in 4 to 5 hours to join the reactor,The reaction temperature is controlled at 50 to 60 DEG C for 4 hours;Then stop the temperature control measures,The reaction temperature increased slowly on its own,The temperature was raised to 100 to 110 ° C for 1 hour.120 kg of acetic anhydride will drop into the reactor,During the dropping, the temperature was maintained at 100 to 110 ° C,After dripping,And stirred at this temperature for 45 minutes;Again dropping 100 kg of acetic anhydride,After dripping,Heating to reflux,The reflux reaction was maintained for 2 hours.After refluxing,Stirring down to 60 ~ 70 ,Adding 120 kg of ethanol,And continued to cool to room temperature.filter,Filter cake into the reactor,480 kg of ethyl acetate and 96 kg of ethanol were added,Heated to 65 ~ 75 ,After stirring for 1 hour,Filter cake drying,Can be 5-azacytosine 74 kg,HPLC purity 98.9percentImpurity 1 content of 0.34percentImpurity 2 content of 0.06percent. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | (1)To 10L autoclave followed by anhydrous formic acid (99.5%) 1.5Kg,Dicyandiamide 2.5 Kg and p-toluenesulfonic acid catalyst (0.005 Kg). In sealed and stirred state,The reactor pressure and slowly warmed to 110 ,After the reaction,Slowly reduce the reaction temperature to room temperature,A white solid was obtained.(2)The white solid was transferred to a 50 L glass reaction kettle,Add 10L mass concentration of 5% dilute hydrochloric acid.Heated to reflux for 30 minutes until the solution becomes clear,The mixture was filtered through a filter cartridge to the crystallizer,The filtrate was added 30% aqueous ammonia in the crystallizer to adjust the pH to 6,Precipitation of white crystals,After centrifugation,After drying in a hot air oven, 5-azacytosine 2.8 kg (85% yield based on dicyandiamide) was obtained. | |
74 kg | 140 kg of formic acid was charged into a reaction kettle,Turn on agitation,Twenty five kilograms of dicyandiamide,The reaction temperature will gradually increase,Control temperature below 60 ,The reaction temperature is no longer rising after the batch will be the remaining 75 kg of dicyandiamide in 4 to 5 hours to join the reactor,The reaction temperature is controlled at 50 to 60 DEG C for 4 hours;Then stop the temperature control measures,The reaction temperature increased slowly on its own,The temperature was raised to 100 to 110 C for 1 hour.120 kg of acetic anhydride will drop into the reactor,During the dropping, the temperature was maintained at 100 to 110 C,After dripping,And stirred at this temperature for 45 minutes;Again dropping 100 kg of acetic anhydride,After dripping,Heating to reflux,The reflux reaction was maintained for 2 hours.After refluxing,Stirring down to 60 ~ 70 ,Adding 120 kg of ethanol,And continued to cool to room temperature.filter,Filter cake into the reactor,480 kg of ethyl acetate and 96 kg of ethanol were added,Heated to 65 ~ 75 ,After stirring for 1 hour,Filter cake drying,Can be 5-azacytosine 74 kg,HPLC purity 98.9%Impurity 1 content of 0.34%Impurity 2 content of 0.06%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | With ammonium sulfate; for 8h;Reflux;Product distribution / selectivity; | Example 5: Preparation of crystalline 2-(Trimethylsilylamino)-4- (trimethylsilyloxyVs-triazine:[00128] A mixture of <strong>[931-86-2]5-azacytosine</strong> (11.2 g; 0.1 mol), hexamethyldisilazane (35 mL) and ammonium sulphate (0.2 g) was heated to reflux (oil bath 160C) for 8 h. The excess of hexamethyldisilazane was evaporated under vacuum obtaining a residue which was triturated with dry toluene (50 mL) and the solvent was evaporated under reduced pressure. The residue was powdered and dried in vacuo in a rotary evaporator 6O0C for 1 h to give the title compound as a white solid (25.0 g; 0.097 mol; 98% yield). |
96% | at 145 - 150℃; for 20h; | Add <strong>[931-86-2]5-azacytosine</strong> (224 g, 2.0 mol) to a dry 2 L round bottom flask.HMDS (646 g, 4.0 mol) and ammonium sulfate (24 g, 0.18 mol),The machine was stirred and mixed, gradually heated to 145-150 C to reflux, and the system began to clarify in about 5 hours.After continuing to reflux for 15 hours,The heating was stopped, and a large amount of white crystals were precipitated when the temperature was lowered to 40-50 C. After dropping to room temperature, the solution was filtered, and the crystal was dipped in 50 ml of HMDS.Drain and dry to obtain 492 g of Intermediate 1, the yield was 96.0%. |
95.7% | With ammonium sulfate; at 120 - 150℃; | <strong>[931-86-2]5-azacytosine</strong> (10g),a mixture of hexamethyldisilazane (50 g) and ammonium sulfate (0.4 g),Heating to 120-150 C reaction;After the reaction was completed, all the solids were dissolved, and the reaction was further continued for 2 to 3 hours, and the temperature was lowered to 15 to 25 C to precipitate a solid. The solid was filtered and dried in vacuo to give Compound A (21.9 g). Yield: 95.7%. |
87% | With ammonium sulfate; at 115 - 135℃; for 16h;Industry scale; | Example 1 Preparation of 2-[(trimethylsilyl)amino]-4-[(trimethylsilyl)oxy]-s-triazine(silyl <strong>[931-86-2]5-azacytosine</strong>) A mixture of <strong>[931-86-2]5-azacytosine</strong> (7.33 Kg), HMDS (33.9 Kg) and ammonium sulfate (0.44 Kg) was heated at reflux (about 115-135 C.) and stirred for 16 hours. After the reaction was complete, the slurry was cooled to 118 C. and then filtered through a bed of celite and rinsed with HMDS (5.6 Kg)(5.6 Kg). The silylated <strong>[931-86-2]5-azacytosine</strong> solution was cooled to 35 C. and the solution was cooled to 18 C., stirred at 18 C., for not less than 6.5 hours and then filtered. The solid was washed twice with HMDS (5.6 Kg each) and dried under vacuum at <=70 C. for 9.5 hours to obtain 14.19 Kg of white silyl <strong>[931-86-2]5-azacytosine</strong> (87%). |
With ammonium sulfate; for 8h;Heating / reflux; | In a 22 L, 3-necked flask, a mixture of <strong>[931-86-2]5-azacytosine</strong> (1) (2.0 kg, 17.8 mol, 1.07 molar eq.), HMDS (9.162 kg) and ammonium sulfate (40.0 g) was heated at reflux for 2 hours. A fresh amount of ammonium sulfate (20.0 g) was added, and the reflux was continued for 6 hours longer. The initial slurry turned into a clear, pale-yellow, solution and no more gas evolved at the end of the reflux. The excess HMDS was evaporated off in vacuum to obtain an off-white residue, which is trimethylsilylated <strong>[931-86-2]5-azacytosine</strong> (6). | |
With ammonium sulfate; for 5h;Heating / reflux; | Reference Example 1 (Prior Art Preparation)[0056] This example demonstrates the preparation of 5-azacytidine according to prior art examples, e.g., Vorbrueggen et.al., J.Org.Chem. Vol. 39, No.25, 1974 and US Patent No. 7,038,038.[0057] 5-Azacytosine (200 g, 1.8 mol) was mixed with 1,1,1,3,3,3-hexamethyldisilazane (HMDS) (800 ml, 619.36 g, 3.837 mol) and ammonium sulfate (NH4^SO4 (5 g, 37.8 mmol). The resulting mixture was heated to reflux for a period of 5 hours. Then, the <n="17"/>mixture was cooled to 6O0C, and the excess HMDS was distilled off under reduced pressure. The residue was heated to 1350C for 30 minutes, and the product was cooled to ambient temperature to afford bis(trimethylsilyl)-<strong>[931-86-2]5-azacytosine</strong> (404 g, 1.58 mol). The <strong>[931-86-2]5-azacytosine</strong> was dissolved in dry 1,2-dichloroethane (125 ml), and 1,2,3, 5-tetra-O-acetyl-beta-D- ribofuranose (47 g, 0.1476 mol) was added. The reaction mixture was cooled to 5-1O0C and a solution of SnCl4 (42.18 g, 0.162 mol) in 1,2-dichloroethane (25 ml) was added dropwise over 15 minutes. The resulting mixture was stirred for 2 hours, during which time the temperature was allowed to reach ambient temperature. Sodium bicarbonate (NaHCO3) (70 g) was added under constant mixing and the reaction mixture was cooled to 150C. Purified water (140 ml) was added drop wise and mixing was maintained for additional 20 minutes, then 1,2-dichloroethane was added and mixing was maintained for 10 additional minutes. The organic and aqueous phases were separated, and the organic phase was filtered through a layer of Celite, washed with 1,2-dichloroethane, and dried over sodium sulfate (Na2SO4).[0058] The organic solvent was evaporated, and the residue was dissolved in methanol (120 ml), then heated to 6O0C to afford a clear solution. Charcoal (1.6 g) was added and the resulting mixture was stirred for 2 hours at ambient temperature. The charcoal was filtered off, and methanol/ammonia solution (200 ml of a 16% solution) was added to the filtrate and stirring was maintained for 20 hours at ambient temperature, during which time the reaction mixture solution gradually became viscous. Vacuum was applied to remove the excess ammonia, and the reaction mixture was cooled to 50C. The resulting solid was filtered off, washed with methanol (3 X 30 ml) and dried to obtain crude 5-azacytidine (8 g, 21% yield) having purity of 98.7% (according to HPLC). | |
With ammonium sulfate;Heating / reflux; | (A) A mixture of 5-Azacytosine (20 g, 178.4 mmol), ammonium sulfate (2.4 g, 18.16 mmol), and hexamethyldisilazane (160 g, 991.3 mmol) was heated to reflux until a clear solution was obtained. The excess of hexamethyldisilazane was removed in the vacuum at 60C. | |
ammonium sulfate; at 120 - 134℃;Product distribution / selectivity; | Hexamethyldisilazane (94.5 ml_), ammonium sulfate (1.25 g) and 5- azacytosine (25 g) were placed into a clean and dry round bottom flask and stirred. The mixture was heated to reflux at 120-1340C and maintained for 2 to 3 hours. The mixture was distilled under vacuum to give a residue and it was allowed to cool to 25-300C. Ethyl acetate (250 ml_) was charged to the residue and stirred. 1 ,2,3,5- tetra-O-acetyl-beta-D-ribofuranose (67.4 g) was added and the mixture was cooled to 5-10C. Triflic acid (23.6 ml_) was slowly added over 10-30 minutes and the mixture was allowed to warm to 20-300C and stirred for 1 -2 hours. Ethyl acetate (125 ml_) and water (125 ml_) were added and stirred. The organic layer was separated, washed with 20% sodium chloride solution (125 ml_), and dried over sodium sulfate. The organic layer was distilled under vacuum at about 40 to 45C to give a residue of 2,3,5-tri-O-acetyl-5-azacytidine (50.0 g). | |
With ammonium sulphate; at 117℃; for 2h;Inert atmosphere; | Example 6 Preparation of 4-amino-1-[3,5-di-O-(p-chlorobenzoyl)]-2-deoxy-alpha-D-ribofuranosyl-1,3,5-triazin-2(1H)-one and 4-amino-1-[3,5-di-O-(p-chlorobenzoyl)]-2-deoxy-beta-D-ribofuranosyl-1,3,5-triazin-2(1H)-one.Purified <strong>[931-86-2]5-azacytosine</strong> (1.62 g), ammonium sulfate (0.162 g) and hexamethyldisilazane (40 mL) were charged into a 4-neck, 100 mL round-bottom flask under nitrogen. The mixture was heated to 117 C. under stirring and kept at this temperature for 2 hours to give a clear solution. Unreacted hexamethyldisilazane was removed under vacuum to give 2-[(trimethylsilyl)amino]-4-[(trimethylsilyl)oxy]-s-triazine as a white solid. The solid was dissolved in anhydrous chloroform (25 mL) and was added into a solution of 1-[3,5-di-O-(p-chlorobenzoyl)]-2-deoxy-alpha-D-ribofuranosyl-chloride (5.0 g, from Example 2) in anhydrous chloroform and stirred at 1 C. under nitrogen. Trimethylsilyl trifluoromethanesulfonate (1.0 g) in anhydrous chloroform (10 mL) was added and the resulting mixture was stirred at this temperature for 21 hours. Saturated aqueous sodium bicarbonate was added to neutralize to pH 6. The mixture was diluted with additional chloroform (100 mL). After phase cut, the organic layer was washed with brine (30 mL) and dried over magnesium sulfate. The mixture was filtered through a bed of filter aid. Methanol was added and the solution was concentrated to 20 mL followed by the addition of anhydrous hexanes (40 mL) under stirring to form slurry. The solid was collected and dried under vacuum to give the product (5.06 g) that contains a mixture of 2.5:1 beta:alpha anomers. It is ready to be used in a process according to this invention for preparing Decitabine, without further purification. | |
ammonium sulfate; at 125 - 130℃; for 6h;Inert atmosphere;Product distribution / selectivity; | 5-Azacytosine (200.0 g, 1.7842 mol, purity > 98%) and hexamethyldisilazane (HMDS) (1.4 L, 6.72 mol, purity > 98%) were charged into a 3-L 4-neck round bottom flask at 25-30C under nitrogen atmosphere. Ammonium sulfate (10.0 g, 0.0756 mol) was added. The mixture was gradually heated to reflux at 125-130C. The reflux was maintained for 6 hours. Typically, the reaction mass became a clear solution after 2-4 hours, and the reaction was substantially complete as soon as the clear solution was formed.[00271] The reaction mass was gradually cooled to 40-50C. HMDS was distilled off at 40-50C under vacuum (10-15 mmHg) to give a white solid. Nitrogen was used to break the vacuum over the solid. Toluene (400.0 mL) was added to the solid residue at 25-30C, and the solvent was distilled off at 40-50C under vacuum (10-15 mmHg) to yield a solid. Nitrogen was used to break the vacuum over the solid. The solid was gradually cooled to 25-30C, and carried through to the next step. HMDS was recovered in 75-80% yield with a purity of about 90-95%. | |
7 g | With ammonium sulfate; chloro-trimethyl-silane; for 17h;Reflux; | (3) 5-Azacytosine (98%, Aldrich, 5.0 g, 44.8 mmol) and ammonium sulfate (25 mg) were suspended in hexamethyldisilazane (25 ml) and chlorotrimethylsilane (0.2 ml) was added. The reaction mixture was heated at the reflux for 17 h. The clear solution was cooled, evaporated, coevaporated twice with dry xylene and vacuum dried to yield whitish solids of the silylated 5-azacyto sine (.-7 g) which is used in whole for the next glycosylation step. |
With ammonium sulfate; for 4h;Reflux; Inert atmosphere; | Under nitrogen atmosphere, a three-necked flask, followed by adding 500g5_ azacytosine, 12. 5g ammonium sulfate and 4000mlHMDS, the reaction was refluxed under stirring until the solution became clear and then refluxed for 4 hours, then evaporated under reduced pressure of HMDS, was pale yellow oil intermediate IV. | |
0.521 kg | With ammonium sulfate; at 120 - 140℃; for 18h; | In 10L reaction flask was added <strong>[931-86-2]5-aza-cytosine</strong> (0.228kg, 2.04mol), ammonium sulfate powder (5.9g, 0.04mol) and HMDS (6.1L), was heated to maintain gentle reflux at 120-140 deg.] C, reaction was carried out for about 18 hr, the reaction was completed, the reaction was stopped, under stirring, under reduced pressure the excess HMDS was evaporated to give a yellow oil 0.521kg, i.e. intermediate 4 '. |
With ammonium sulfate; for 2h;Inert atmosphere; Reflux; | Under nitrogen protection, 500g of <strong>[931-86-2]5-azacytosine</strong> was added to 3000ml of HMDS, and 5g of ammonium sulfate was added as a catalyst.The reaction was refluxed with stirring until the solution became clear, and the mixture was refluxed for 2 hours, then HMDS was evaporated to dryness under reduced pressure to afford Intermediate IV. | |
19.5 g | With ammonium sulfate; for 18h;Reflux; | Mix <strong>[931-86-2]5-azacytosine</strong> (10.0 g), hexamethyldisilazane (200 mL) and ammonium sulfate (0.2 g), heat to reflux,The reaction was stirred for 18 hours. After the reaction is completed, it is concentrated under reduced pressure.Heat n-heptane (200 mL) to beat and filter.The filter cake was dried at 50 C for 12 hours.To give 19.5 g of white silyl <strong>[931-86-2]5-azacytosine</strong>,The mass yield was 195% (based on <strong>[931-86-2]5-azacytosine</strong>). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 4 Preparation of Crystalline 4-amino-1,2-dihydro-1,3,5-triazin-2-one A mixture of guanylurea (1.02 g; 0.01 mol), DMF (5 mL) and ethyl ortoformate (3 mL) was heated at 155 C. for 1.5 h and then allowed to stand at room temperature overnight. The suspension was filtered and the solid washed with H2O (5 mL). 5-Azacytosine was re-crystallized from H2O. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | With sodium hydroxide; In dimethyl sulfoxide; at 120℃; for 10h; | A suspension of <strong>[931-86-2]5-azacytosine</strong> (2 g, 17.8 mmol) and (2S)-2-[(trityloxy] methyljoxirane (5.63 g, 17.8 mmol) in dry dimethylsulfoxide (20 ml) was heated to 120 0C. One pellet of sodium hydroxide (60 mg, 1.5 mmol) was added, the heating under stirring continued till dissolution and then for additional 10 h. The reaction mixture was cooled to room temperature and poured onto a column of neutral alumina (150 ml) equilibrated in toluene. Elution was performed with a mixture of toluene - ethyl acetate (1:1) till the drop of UV absorption followed by ethyl acetate (200 ml) and then a system ethyl acetate - acetone - ethanol - water (18:3:1 :1). The purity of product was controlled by TLC in the same system. All product containing fractions (still containing dimethylsulfoxide) were taken down, the residue codistilled with dimethylformamide (2 x 100 ml) and then with toluene (100 ml). The semisolid residue was crystallized from toluene - acetone (2:1) mixture, the crystalline material was collected by suction, washed with diethyl ether and dried on the air. Yield 6.5 g of 1 (83 %), white crystals,- m.p. 130-132 0C,- for C25H24N4O3 .0.5 H2O (437.5) calculated: 68.63 % C, 5.76 % H, 12.81 % N; found: 68.82 % C, 5.87 % H, 12.25 % N. - FAB MS, m/z (%):429 (2) [M+H], 243 (100) [trityl], 113 [<strong>[931-86-2]5-azacytosine</strong> + H].- 1H NMR (DMSO-c/e): 8.08 s, 1 H (H-6); 7.42 m, 6 H (H-arom.); 7.40 br s, 1 H (NH2); 7.36 m, 6 H (H-arom.); 7.30 br s, 1 H (NH2); 7.27 m, 3 H (H-arom); 4.04 dd, 1 H, J(Va,2') = 3.2, J(gem) = 13.4 (H-1 'a); 3.92 m, 1 H (H-2'); 3.41 dd, 1 H, J(1 'b,2') = 9.1 (H-1 'b); 2.97 dd, 1 H, J(3'a,2') = 5.0, J(gem) = 9.4 (H-3'a); 2.88 dd, 1 H, J(3'b,2') = 5.5 (H-3'b).- 13C NMR (DMSO-c/e): 166.70 (C-4); 159.89 (C-6); 154.26 (C-2); 143.88, 3 C (trityl); 128.43, 6 C (trityl); 128.10, 6 C (trityl); 127.23, 3 C (trityl); 86.07 (O-C); 66.77 (C-2');66.15 (C-3'); 50.55 (C-r). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With water; at 20℃;Acidic aqueous solution; | Decitabine and azacitidine are unstable in aqueous media and undergo hydrolytic degradation. In acidic medium, decitabine is hydrolyzed at room temperature to 5-azacytosine (1e) and 2-deoxyribose (1f, FIG. 3A). In neutral medium at room temperature, the opening of the triazine ring takes place at the 6-position to form the transient intermediate formyl derivative (1g), which is further hydrolyzed to the amidino-urea derivative (1h) and formic acid (FIG. 3B) (Piskala, A.; Synackova, M.; Tomankova, H.; Fiedler, P.; Zizkowsky, V. Nucleic Acids Res. 1978, 4, s109-s-113.). This hydrolysis at the 6-position also occurs in acidic and basic aqueous media at even faster rates. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 1; (A); A mixture of 5-azacytosine (20 g, 178.4 mmol), ammonium sulfate (2.4 g, 18.16 mmol), and hexamethyldisilazane (160 g, 991.3 mmol) is heated to reflux until a clear solution is obtained. The excess of hexamethyldisilazane is removed in the vacuum at 60C.; (B); A mixture of 264 g of dichloromethane, lithium trifluoromethane sulfonate (13.92 g, 89.2 mmol) and the "chloro sugar" C-137 (3,5-Dip-chloro-benzoyl-2deoxy-alpha-ribofuranosylchloride) [46.0 g, 107.1 mmol) are prepared and added to the residue obtained in step (A).; (C); The mixture is stirred for 4 hours at ambient temperature (20-25C). Then the solvent is removed at 40C in the vacuum and the obtained residue is dissolved in 60 g ethyl acetate. The solution is added drop wise to a mixture of 220 g of aqueous sodium hydrogen carbonate (2.5% w-solution), 174 g ethyl acetate, 36 g cyclohexane and 70 g acetonitrile at 0C and the obtained reaction mixture stirred for 4 h at 0C. The precipitate of the blocked (protected) aminotriazine is filtered off, washed with aqueous sodium hydrogen carbonate (2.5% w-solution), water, and finally with a mixture of acetonitrile and ethyl acetate (1:1). Yield: 38.2 g; 49.5% [assay (beta-isomer): 70.1%; purity (beta-isomer): 64.7%].; (D); The compound corresponding to formula (III) as obtained in Section (C) is further treated with an alcoholic solution of ammonia in a known manner so that 2'-deoxy-5-azacytidine (Decitabine) is obtained in practically quantitative yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In N,N-dimethyl-formamide; at 155℃; for 1.5h; | Example 4: Preparation of crystalline 4-amino-l, 2-dihvdro-l, 3, 5-triazin-2-one:; [00127] A mixture of guanylurea (1.02 g; 0.01 mol), DMF (5 mL) and ethyl ortoformate (3mL) was heated at 155C for 1.5 h and then allowed to stand at room temperature overnight. The suspension was filtered and the solid washed with H2O (5 mL). 5-Azacytosine was re-crystallized from H2O. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Placed cyanoguanidine (200 g) and formic acid (320 g, assay -99%) into a clean and dry round bottom flask with stirring at 28C. The mixture was heated to 76C and heating was discontinued. The temperature of the mixture increased to 1100C. The mixture was maintained for 10-15 minutes at 110C, then was cooled to 35-400C, isopropyl alcohol (1000 mL) was added, and the mixture was maintained for 20 minutes at 28C. Filtered the obtained solid, washed with isopropyl alcohol (200 ml_) and dried for 2 hours at 70-750C.Charged the above obtained solid and methanol (500 ml) into a clean and dry round bottom flask at 25-35C. Charged 25% NaOMe solution in methanol (162 g) to the mixture and stirred for 5 minutes. Added dimethylformamide dimethylacetal (270 g) to the mass slowly at 28C. The mixture was heated to 45-500C and maintained for about 4 hours. Cooled the mixture to 25-35C and adjusted the pH to 6-7 using formic acid (-15 ml_). Charged water (1000 ml_) to the mixture and maintained for 15-20 minutes with stirring. Filtered the obtained precipitate, washed with a methanol-water mixture (200 ml_, 1 :1 by volume) and dried the solid for 3 hours at 80-900C. Yield: 219 g.Charged the above-obtained 5-azacytosine (219 g) and water (1800 ml_) into a round bottom flask at 25-35C. The mixture was heated to 45-500C and maintained for 20-30 minutes. Filtered the hot mixture, washed with water (400 ml_) and dried the solid for 5 hours at 85-95C. Yield: 190 g. Purity by HPLC: 98.1 % |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
3.06% | General procedure: Suspension of anhydrous base (1.5 g) and (NH4)2SO4 (110 mg) in HMDS (30 mL) was refluxed overnight under the inert atmosphere of argon. The excess HMDS was removed under the reduced pressure (0.1 mmHg). To the oily product thus obtained 5,6-di-O-acetyl-2,3-di-O-benzyl-l-ascorbic acid (nbase/1.507 mmol) dissolved in dry CH3CN (15 mL) was added. Then TMSOTf (4 × 0.2 mL) was added dropwise at room temperature and the mixture stirred for 16 h at 55-70 C. The reaction mixture was evaporated and the crude oily product washed with CH2Cl2 and several times with aq. NaHCO3. Organic layer was dried over MgSO4, evaporated, and the crude product purified by silica gel column chromatography. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
27.2% | General procedure: The suspension of anhydrous pyrimidine base (1.5 g) and (NH4)2SO4 (100 mg) in HMDS (30 mL) was refluxed for 3 h in the inert atmosphere of argon. Excess HMDS was evaporated under the reduced pressure. To the oily product thus obtained, 4-(5,6-epoxy)-2,3-di-O-benzyl-l-ascorbic acid (0.30 mmol) in CH3CN (5 mL) was added. Then, TMSOTf was added in portions (0.5 mL; 2.76 mmol) and the reaction mixture heated for 12 h at 55-70 C. The solvent was evaporated and the residue portioned between CH2Cl2 and saturated aq. NaHCO3. Organic layer was dried over MgSO4, evaporated and the residue submitted to silica gel column chromatography. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
34 mL of BSTFA are added to a suspension of 6.4 g of azacytosine in 300 mL of acetonitrile. The mixture is brought to 50C and it is stirred for 90 minutes, It is cooled to ambient temperature, 6.3 mL of trimethylsilyltriflate and 11.1 g of 1-chloro-3,5-di-p-toluoyl-2-deoxy-D-ribofuranose are added to the solution, in about ten minutes. It is stirred for 140 minutes, 400 mL of methanol are added controlling the temperature in an ice bath. Concentration is carried out at low pressure until a viscous residue is obtained, 400 mL of methanol are added, it is heated to 50C and 36 mL of 30% solution of sodium methylate in methanol are added. It is stirred for 1 hour, it is cooled to 0C, it is stirred to complete precipitation and the solid is filtered by washing it on the filter with methanol. 2.3 g of decitabine with HPLC purity (UV 254 nm) of 99.2% are obtained after drying at low pressure. After recrystallisation from methanol the HPLC purity (UV 254 nm) is 99.8%. | ||
Example 9 Preparation of Decitabine 34 mL of BSTFA are added to a suspension of 6.4 g of azacytosine in 300 mL of acetonitrile. The mixture is brought to 50 C. and it is stirred for 90 minutes. It is cooled to ambient temperature, 6.3 mL of trimethylsilyltriflate and 11.1 g of 1-chloro-3,5-di-p-toluoyl-2-deoxy-D-ribofuranose are added to the solution, in about ten minutes. It is stirred for 140 minutes, 400 mL of methanol are added controlling the temperature in an ice bath. Concentration is carried out at low pressure until a viscous residue is obtained, 400 mL of methanol are added, it is heated to 50 C. and 36 mL of 30% solution of sodium methylate in methanol are added. It is stirred for 1 hour, it is cooled to 0 C., it is stirred to complete precipitation and the solid is filtered by washing it on the filter with methanol. 2.3 g of decitabine with HPLC purity (UV 254 nm) of 99.2% are obtained after drying at low pressure. After recrystallisation from methanol the HPLC purity (UV 254 nm) is 99.8%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
34.7 mL of BSTFA are added to a suspension of 6.3 g of azacytosine in 126 mL of dichloromethane. The mixture is brought to reflux temperature and it is stirred for 90 minutes. 11.35 mL of trimethylsilyltriflate and then a solution of 16.7 g of 1,2,3,5-tetra-O-acetyl-D-ribofuranose in 33 mL of dichloromethane are added to the limpid solution, in about ten minutes. Reflux and stirring are maintained for two hours, it is cooled to room temperature, 250 mL of methanol are added controlling the temperature in an ice bath. Concentration is carried out at low pressure until a residue volume of about 150 mL is obtained, 250 mL of methanol, are added and once again concentration is carried out at low pressure until a residue volume of about 150 mL is obtained. 200 mL of methanol are added, it is heated to 50C and 48 mL of a 10% solution of sodium methylate in methanol are added. It is stirred for 1 hour, it is cooled to room temperature, it is stirred to complete precipitation and the solid is filtered by washing it on the filter with methanol. 9.9 g of azacitidine with HPLC purity (UV 254 nm) of 98.9% are obtained after drying at low pressure. After recrystallisation from methanol-dimethyl sulfoxide the HPLC purity (UV 254 nm) is of 99.7%. | ||
Example 7 Preparation of Azacitidine 34.7 mL of BSTFA are added to a suspension of 6.3 g of azacytosine in 126 mL of dichloromethane. The mixture is brought to reflux temperature and it is stirred for 90 minutes. 11.35 mL of trimethylsilyltriflate and then a solution of 29 g of 2,3,5-tri-O-benzoyl-1-O-acetyl-D-ribofuranose in 50 mL of dichloromethane are added to the limpid solution, in about ten minutes. Reflux and stirring are maintained for two hours, it is cooled to room temperature and the reaction mixture is poured onto 250 mL of methanol controlling the temperature in an ice bath. Concentration is carried out at low pressure until a residue volume of about 150 mL is obtained, 250 mL of methanol are added and once again concentration is carried out at low pressure until a residue volume of about 150 mL is obtained. 200 mL of methanol are added, it is heated to 50 C. and 48 mL of a 10% solution of sodium methylate in methanol are added. It is stirred for 1 hour, it is cooled to room temperature, it is stirred to complete precipitation and the solid is filtered by washing it on the filter with methanol. 9.3 g of azacitidine with HPLC purity (UV 254 nm) of 91.6% are obtained after drying at low pressure. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
34.7 mL of BSTFA are added to a suspension of 6.3 g of azacytosine in 126 mL of dichloromethane. The mixture is brought to reflux temperature and it is stirred for 90 minutes. 11.35 mL of trimethylsilyltriflate and then a solution of 16.7 g of 1,2,3,5-tetra-O-acetyl-D-ribofuranose in 33 mL of dichloromethane are added to the limpid solution, in about ten minutes. Reflux and stirring are maintained for two hours, it is cooled to room temperature, 250 mL of methanol are added controlling the temperature in an ice bath. Concentration is carried out at low pressure until a residue volume of about 150 mL is obtained, 250 mL of methanol, are added and once again concentration is carried out at low pressure until a residue volume of about 150 mL is obtained. 200 mL of methanol are added, it is heated to 50C and 48 mL of a 10% solution of sodium methylate in methanol are added. It is stirred for 1 hour, it is cooled to room temperature, it is stirred to complete precipitation and the solid is filtered by washing it on the filter with methanol. 9.9 g of azacitidine with HPLC purity (UV 254 nm) of 98.9% are obtained after drying at low pressure. After recrystallisation from methanol-dimethyl sulfoxide the HPLC purity (UV 254 nm) is of 99.7%. | ||
Example 6Preparation of Azacitidine34.7 mL of BSTFA are added to a suspension of 6.3 g of azacytosine in 126 mL of dichloromethane. The mixture is brought to reflux temperature and it is stirred for 90 minutes. 11.35 mL of trimethylsilyltriflate and then a solution of 16.7 g of 1,2,3,5-tetra-O-acetyl-D-ribofuranose in 33 mL of dichloromethane are added to the limpid solution, in about ten minutes. Reflux and stirring are maintained for two hours, it is cooled to room temperature, 250 mL of methanol are added controlling the temperature in an ice bath. Concentration is carried out at low pressure until a residue volume of about 150 mL is obtained, 250 mL of methanol are added and once again concentration is carried out at low pressure until a residue volume of about 150 mL is obtained. 200 mL of methanol are added, it is heated to 50 C. and 48 mL of a 10% solution of sodium methylate in methanol are added. It is stirred for 1 hour, it is cooled to room temperature, it is stirred to complete precipitation and the solid is filtered by washing it on the filter with methanol.9.9 g of azacitidine with HPLC purity (UV 254 nm) of 98.9% are obtained after drying at low pressure.After recrystallisation from methanol-dimethyl sulfoxide the HPLC purity (UV 254 nm) is of 99.7%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With magnesium methanolate; In methanol; at 55℃; for 3h; | General procedure: 5-Azacytosine (500 mg, 4.46 mmol, 1 equiv) and appropriate aromatic aldehyde (26.77 mmol, 6 equiv) were added to methanol (ca. 40 mL) containing magnesium methylate (521.80 mg, 22.30 mmol, 5 equiv). The reactionwas carried for 3 h at 55 C. Then sodium borohydride (1.525 mg, 40.14 mmol, 9 equiv) was slowly added to the mixture and the reduction reaction was carried for 30 min at room temperature. After that, the pH of the mixture was adjusted to 7 with conc. HCl and then the solvents were removed by evaporation under the reduced pressure. Methanol (30e40 mL) was added to the residue and the mixture was filtered. Then solvents were evaporated and product was isolated by silica gel column chromatography and was eluted with ethyl acetate and methanol. The yields range: 60%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With magnesium methanolate; In methanol; at 55℃; for 3h; | General procedure: 5-Azacytosine (500 mg, 4.46 mmol, 1 equiv) and appropriate aromatic aldehyde (26.77 mmol, 6 equiv) were added to methanol (ca. 40 mL) containing magnesium methylate (521.80 mg, 22.30 mmol, 5 equiv). The reactionwas carried for 3 h at 55 C. Then sodium borohydride (1.525 mg, 40.14 mmol, 9 equiv) was slowly added to the mixture and the reduction reaction was carried for 30 min at room temperature. After that, the pH of the mixture was adjusted to 7 with conc. HCl and then the solvents were removed by evaporation under the reduced pressure. Methanol (30e40 mL) was added to the residue and the mixture was filtered. Then solvents were evaporated and product was isolated by silica gel column chromatography and was eluted with ethyl acetate and methanol. The yields range: 60%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Ca. 7 g | With ammonium sulfate; 1,1,1,3,3,3-hexamethyl-disilazane; for 17h;Reflux; | (3) 5-Azacytosine (98%, Aldrich, 5.0 g, 44.8 mmol) and ammonium sulfate (25 mg) were suspended in hexamethyldisilazane (25 ml) and chlorotrimethylsilane (0.2 ml) was added. The reaction mixture was heated at the reflux for 17 h. The clear solution was cooled, evaporated, coevaporated twice with dry xylene and vacuum dried to yield whitish solids of the silylated <strong>[931-86-2]5-azacytosine</strong> (~7 g) which is used in whole for the next glycosylation step. |
Ca. 7 g | With ammonium sulfate; 1,1,1,3,3,3-hexamethyl-disilazane; for 17h;Reflux; | <strong>[931-86-2]5-azacytosine</strong> (98%, Aldrich, 5.0 g, 44.8 mmol) and ammonium sulfate (25 mg) Was suspended in hexamethyldisilazane (25 mL) and chlorotrimethylsilane (0.2 mL) was added.The reaction mixture was heated under reflux for 17 h.The clear solution was cooled,Evaporated, co-evaporated twice with anhydrous xylene,Vacuum drying to give silylated <strong>[931-86-2]5-azacytosine</strong> (about 7 g) A white solid (which is used as a whole in the subsequent glycosylation step) Respectively. |
With ammonium sulfate; at 80℃; for 2h; | Put 33.6g of <strong>[931-86-2]5-azacytosine</strong> into a three-necked bottle,Add 168 ml of trimethylchlorosilane and 0.85 g of ammonium sulfate.The temperature was raised to 80 C, and the solution was clarified in about 2 h.Then distill off the solvent under reduced pressure to constant weight.Azacitidine intermediate I. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With immobilized NDT from Bacillus psychrosaccharolyticus; In aq. phosphate buffer; at 37℃; for 3h;pH 7.5;Enzymatic reaction; | Nucleoside analogues synthesis was performed by adding100 mg of immobilized biocatalyst (displaying 1.8 IU with thestandard assay) to 5 mL of 10 mM potassium phosphate bufferpH 7.5 with different concentrations of trifluorothymine and2-deoxyuridine (from 10 to 40 mM), for 5-trifluorothymidine syn-thesis (trifluridine), or 5-azacytosine and 2-deoxyuridine (from10 to 20 mM), for 5-aza-2-deoxycytidine synthesis (decytabine).Reactions were performed at 37C for 3 h and, at different reac-tion times, samples were withdrawn and filtered off using a pipettefilter device. Afterwards, the supernatant was analyzed by HPLCto quantitatively measure the reaction products as aforemen-tioned (section 2.6. of Materials and methods). Retention timeswere: uracil (Ura): 5.41 min; 2-deoxyuridine (dUrd): 9.16 min;5-trifluorothymine (5-tFThy): 8.0 min; 5-trifluorothymidine (5-tFThd): 13.5 min; 5-azacytosine (5-azaCyt): 4.5 min; 5-aza-2-deoxycytidine (5-azadCyd): 8.9 min. The produced nucleoside wasidentified by comparison of its HPLC retention time with that ofauthentic samples. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With ammonium sulfate; 1,1,1,3,3,3-hexamethyl-disilazane; for 17h;Reflux; | (3). 5-Azacytosine (98%, Aldrich, 5.0 g, 44.8 mmol) and ammonium sulfate(25 mg) were suspended in hexamethyldisilazane (25 ml) and chlorotrimethylsilane(0.2 ml) was added. The reaction mixture was heated at the reflux for 17 h. The clear solution was cooled, evaporated, co-evaporated twice with dry xylene and vacuum dried to yield whitish solids of the silylated <strong>[931-86-2]5-azacytosine</strong> (7 g), which is used in whole for the next glycosylation step. | |
With iodine; 1,1,1,3,3,3-hexamethyl-disilazane; at 125℃; for 2h; | To a suspension of <strong>[931-86-2]5-azacytocin</strong> (276.0 g), hexamethyldisilazane (2.5 L) and trimethylsilylchloride (100 mL), iodine (1.0 g) were added and heated to 125 C to reflux for 2 h. 5-Azacytocin was dissolved and reflux is stopped afte rthe compete gas evaluation. The excess HMDS is evaporated off in the vacuum to obtain off-white solid, which is silylated azacytocin |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In acetonitrile; at 50℃; for 2h;Inert atmosphere; | <strong>[931-86-2]5-azacytosine</strong> (0.980 g, 7.40 mmol) was rendered anhydrous by repeated co-evaporation with anhydrous acetonitrile and was dissolved in anhydrous acetonitrile (40 mL) under argon atmosphere. To a solution was added BSA (4.92 mL, 20.0 mmol) and the mixture was stirred at 50 C for 2 h. After the solution became colorless, an anhydrous acetonitrile solution (3 mL) containing 1,3,5-tri-Oacetyl-2-deoxy-D-ribose (2.50 g, 9.60 mmol) was added to the reaction mixture, followed by addition of TMSOTf (1.74 mL,9.60 mmol) After the resulting orange-colored solution was stirred at ambient temperature for 30 min, the mixture was diluted with CH2Cl2 (250 mL), and then poured to aqueous sat. NaHCO3 (150 mL). The mixturewas extracted with CH2Cl2 and aqueous layer was repeatedly extracted with CH2Cl2. The organic layer was combined, dried over Na2SO4, filtered, and evaporated to afford 9 (1.75 g, 76%) as a white solid of an anomeric mixture: Rf 0.41(CH3OH/CHCl3, 1:10); 1H NMR (400 MHz, DMSO-d6) d 8.31 (s,1H),8.30 (s, 1H), 7.60 (br, 2H), 7.50 (br, 2H), 6.02e5.99 (m, 2H), 5.21(dd, 1H, J 6.0, 3.6 Hz), 5.11 (d, 1H, J 6.4 Hz), 4.79 (dd, 1H, J 4.4,4.4 Hz) 4.28e4.19 (m, 3H), 4.11 (dddd, 2H, J 12.0, 12.0, 12.0,4.4 Hz), 2.73 (ddd, 1H, J 15.2, 6.4, 6.4 Hz), 2.53 (ddd, 1H, J 14.4,14.4, 7.2 Hz), 2.37 (ddd, 1H, J 14.4, 14.4, 14.4, 2.8 Hz), 2.21 (d, 1H,J 15.2 Hz), 2.05e1.92 (m, 12 H),; 13C NMR (100 MHz, CDCl3)d 170.68, 170.65, 170.57, 170.3, 166.7, 166.3, 156.7, 155.9, 153.9153.3,87.9, 86.4, 84.4, 82.3, 74.62, 74.57, 64.2, 63.9, 37.9, 37.0, 21.3, 21.1,21.0; HRMS (ESI) calcd. for C12H16N4NaO6 [MNa] m/z 335.0962,found m/z 335.0962. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Ca. 7 g | With ammonium sulfate; 1,1,1,3,3,3-hexamethyl-disilazane; for 17h;Reflux; | [1521 (3) 5-Azacytosine (98%, Aldrich, 5.0 g, 44.8 mmol) and ammonium sulfate (25 mg) were suspended in hexamethyldisilazane (25 ml) and chlorotrimethylsilane (0.2 ml) was added. The reaction mixture was heated at the reflux for 17 hours. The clear solution was cooled, evaporated, coevaporated twice with dry xylene and vacuum dried to yield whitish solids of the silylated <strong>[931-86-2]5-azacytosine</strong> (7 g) which is used in whole for the next glycosylation step. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In dichloromethane; at 15℃; for 0.5h; | 20.0 g of <strong>[931-86-2]5-azacytosine</strong> and 87.5 ml of dichloromethane were added to the reaction flask,62.1 ml oftriethylaminewas added theretoat 15 C, and 118.9 g oftrimethylsilyl trifluoromethanesulfonate was added dropwise, and the system was dissolved. Stirring was continued for 30 min.The reaction solution was notseparated, and 38.3 g of 1-chloro-3,5-di-O-p-chlorobenzoyl-deoxy-D-ribofuranose was directly added thereto,and the reactionwas stirred at 0 C forabout 3 hours until the reaction solution was clarified.37ml of triethylamine was added to quench the reaction, were added to 500ml each of dichloromethane and water, filtered, dividedfrom the organic phase was concentrated to dryness, the residue was added 500ml of water was stirred well, filtered off with suction, the solid was dried 45 6h in vacuo, pulverized, Theintermediate D wasfurtherdried for 3 h to obtain 42.8 g of Intermediate D, yield 95.1%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Nitrogen heterocyclic amine 2b (2mmol) was added to the dried two-necked flask.Sodium hydride (60% paraffin mixture, 4 mmol),Add anhydrous DMF (10 mL) under argon,Stir the reaction at room temperature for 2 h,Intermediate 1 (1 mmol) was dissolved in 5 mL of anhydrous DMF.Then slowly drop the solution into the double-necked bottle, transfer it to the oil bath after the drop.Heated at 100 C for 24 h under argon protection (TLC tracking).The solvent was evaporated to dryness under reduced pressure, and water was then taken to neutral with 1M NaHSO4 solution.Filtration to give the crude product,Purification by column chromatography (V ethyl acetate: V methanol = 5:1),Obtain a pure product3g or 3h. | ||
General procedure: In a dry double neck flask added nitrogen heterocyclic amine 2b (2mmol), sodium hydride (60% paraffin mixture, 4mmol), under argon protection added anhydrous DMF (10 mL), stir the reaction at room temperature for 2 h, Intermediate 1 (1mmol) dissolve in 5mL of anhydrous DMF, and then slowly drop the solution into the double neck flask, after drop finished transfer to the oil bath, under argon protection heated at 100 C for 24h (TLC tracking). Evaporate the solvent under reduced pressure, add water to adjust the pH to get neutral with 1Mu NaHS04 solution, filtration and obtained crude product, column chromatography purification (V ethyl acetate: V methanol=5:1), and obtained pure product 3g or 3h |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | at 115℃; for 2h; | (1)Weigh 42 g (0.5 mol) of dicyandiamide in a dry reaction kettle.Measure 120 mL (2.0 mol)Methyl formate is added to the reaction vessel and mixed with dicyandiamide.The reactor was placed in an oven and the temperature was raised to 115 C.After being kept for 120 minutes, it was taken out, and the liquid in the kettle was distilled off, and then cooled.The resulting white solid was taken out.(2)Transfer the white solid to a 1000 mL three-necked flask.200 mL of a 10% strength diluted hydrochloric acid was added.Heat to reflux for 30 minutes until the solution became clear, and the clear liquid was filtered while hot.Ammonia water was added to the filtrate to adjust the pH to 6, and white crystals were precipitated.After centrifugation,Hot air oven 120 C5-azacytosine41g(73% yield based on dicyandiamide). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | at 115℃; for 2h; | (1)Weigh 42 g (0.5 mol) of dicyandiamide in a dry reaction kettle.100 mL (1.25 mol) of ethyl formate was added to the reaction kettle and mixed with dicyandiamide.The reactor was placed in an oven and the temperature was raised to 115 C.After being kept for 120 minutes, it was taken out, and the liquid in the kettle was distilled off, and then cooled.The resulting white solid was taken out.(2)Transfer the white solid to a 1000 mL three-necked flask.200 mL of a 10% strength diluted hydrochloric acid was added.Heat to reflux for 30 minutes until the solution became clear, and the clear liquid was filtered while hot.Ammonia water was added to the filtrate to adjust the pH to 6, and white crystals were precipitated. After centrifugation,5-azacytosine can be obtained by drying in a hot air oven at 120 C42g(75% yield based on dicyandiamide). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | at 115℃; for 2h; | (1)Weigh 42 g (0.5 mol) of dicyandiamide in a dry reaction kettle.Measure 120 mL (1.25 mol)The propyl formate is added to the reaction vessel and mixed with dicyandiamide.The reactor was placed in an oven and the temperature was raised to 115 C.Remove after 120 minutes of heat preservation,After evaporating the liquid in the kettle,Cool and remove the resulting white solid.(2)Transfer the white solid to a 1000 mL three-necked flask.200 mL of a 10% strength diluted hydrochloric acid was added.Heat to reflux for 30 minutes until the solution became clear, and the clear liquid was filtered while hot.Ammonia water was added to the filtrate to adjust the pH to 6, and white crystals were precipitated.After centrifugation,5-azacytosine can be obtained by drying in a hot air oven at 120 C45g(Yield based on dicyandiamide is 80%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
41.7% | A suspension of <strong>[931-86-2]5-azacytosine</strong> (14a) (150.1 g, 1.339 mol) and ammonium sulfate (4.4 g, 33.3 mmol) in hexamethyldisilazane (HMDS, 980 mL) was refluxed in 2-L round-bottomed flask at stirring under argon atmosphere for 21 h. The solution was cooled to ambient temperature and excess of HMDS was removed in a rotary evaporator to give a white solid. The residue was dissolved in anhydrous dichloromethane (1 L) and the solution was used in the step below. (6aR,9aS)-2,2,4,4-Tetraisopropyl-8-((4-(octyloxy)benzyl)thio)tetrahydro-6H-thieno[3,2- f][l,3,5,2,4]trioxadisilocine (13a) (280 g, 446.5 mmol) was dissolved in anhydrous dichloromethane (1300 mL) and the solution of the silylated azacytosine was added. The resulting solution was cooled to 0 C while stirring under argon atmosphere. N-Bromosuccinimide (87 g, 491.1 mmol, 1.1 equiv.) was added to the cooled mixture in 5 portions over 30 minutes. The resulting mixture was stirred at 0 C for 1.5 h. Thin-layer chromatography was used to monitor consumption of starting material 3 (heptanes: ethyl acetate = 19: 1). After 13a was consumed completely, the reaction mixture was quenched with sodium thiosulfate (160 g in 1800 mL of water) and stirred for 0.5 h at 0 C. The mixture was filtered through a pad of Celite 209 (200 g). The organic layer was separated and the aqueous layer was extracted with dichloromethane (1.5L x 2). The combined organic layers were dried over sodium sulfate (200 g) for 14 h, clarified by filtration and concentrated in a 10-L rotary evaporator to give a crude product (420 g). Isolation of intermediate 15a from a mixture of anomers by chromatography: The crude product from the above step was purified by column chromatography on silica gel ( kg). The product was eluted with a gradient of ethyl acetate in dichloromethane 30% to 100% to give four fractions: Fl: 9 g (15a contaminated with less polar impurities); F2: 29.0 g (pure b anomer); F3: 56 g (a and 88% b mixture); F4: 35 g (a and 68% b mixture). Fraction 3 was eluted through a column of silica gel (1200 g) with heptanes: ethyl acetate: triethyl amine (1:1:1%, 36 L) to give 38 g of pure product 15a. Fraction 4 was eluted through a column of silica gel (1200 g) with heptanes: ethyl acetate: triethyl amine (1:1:1%, 33 L) to give 23.8 g of pure product 15a. The total isolated amount of 15a was 90.6 grams (yield 41.7%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With ammonium sulfate; N-Bromosuccinimide; 1,1,1,3,3,3-hexamethyl-disilazane; In dichloromethane;Heating; | (6aR,9aS)-2,2,4,4-tetramethyl-8-((4-(octyloxy)benzyl)thio)tetrahydro-6H-thieno[3,2- f][l,3,5,2,4]trioxadisilocine (0.86 g, 1.670 mmol) (13g) was reacted with <strong>[931-86-2]5-azacytosine</strong> (0.562 g, 5.01 mmol) in the manner described in General Method D to afford 4-amino- l-((6aR,8R,9aS)- 2,2,4,4-tetramethyltetrahydro-6H-thieno[3,2-f][l,3,5,2,4]trioxadisilocin-8-yl)-l,3,5-triazin-2(lH)- one (15g) and 4-amino-l-((6aR,8s,9aS)-2,2,4,4-tetramethyltetrahydro-6H-thieno[3,2- f][l,3,5,2,4]trioxadisilocin-8-yl)-l,3,5-triazin-2(lH)-one (15h) as a 2.5:1 mixture of anomers (b:a) as determined by crude 1 H NMR. LCMS for C12H23N4O4SS12 [M+H]+ calculated: 375.10; found: 375.6. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With ammonium sulfate; N-Bromosuccinimide; 1,1,1,3,3,3-hexamethyl-disilazane; In dichloromethane;Heating; | (6aR,9aS)-8-((4-(octyloxy)benzyl)thio)-2,2,4,4-tetraphenyltetrahydro-6H-thieno[3,2- f][l,3,5,2,4]trioxadisilocine (2 g, 2.62 mmol) (13h) was reacted with <strong>[931-86-2]5-azacytosine</strong> (0.881 g, 7.86 mmol) in the manner described in the General Method D to afford 0.64 g (40%) of 4-amino- 1 - ((6aR,8R,9aS)-2,2,4,4-tetraphenyltetrahydro-6H-thieno[3,2-f][l,3,5,2,4]trioxadisilocin-8-yl)-l,3,5- triazin-2(lH)-one (15i) and 4-amino-l-((6aR,8S,9aS)-2,2,4,4-tetraphenyltetrahydro-6H-thieno[3,2- f][l,3,5,2,4]trioxadisilocin-8-yl)-l,3,5-triazin-2(lH)-one (15j) as a 4:1 mixture of anomers (b:a) as determined by crude NMR. NMR (400 MHz, DMSO-ifc) d 11.96 (s, 2H), 8.64 (s, 1H), 8.12 (s, 4H), 7.69 (d, J = 6.5 Hz, 7H), 7.66 - 7.61 (m, 8H), 7.56 - 7.37 (m, 63H), 7.33 (dd, J = 7.6, 4.0 Hz, 19H), 4.82 - 4.74 (m, 5H), 4.49 (q, J = 8.3 Hz, 1H), 4.12 (d, J = 5.2 Hz, 9H), 3.95 (dd, 7 = 12.1, 5.7 Hz, 1H), 3.68 (dt, J = 8.0, 5.1 Hz, 5H), 2.71 - 2.60 (m, 5H), 2.54 (d, J = 6.2 Hz, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With ammonium sulfate; 1,1,1,3,3,3-hexamethyl-disilazane; at 136℃; for 18h; | In a 50 mL round bottom flask was added <strong>[931-86-2]5-azacytosine</strong> (1.947 g, 17.37 mmol) and ammonium sulfate (0.092 g, 0.695 mmol) in HMDS (13.35 ml, 63.7 mmol) and the resulting suspension was heated to 136 C (reflux) for 18 h. A clear solution was obtained and after cooling to room temperature (rt), the solution was concentrated under reduced pressure (rotoevaporation) until a white solid corresponding to intermediate 14a was isolated. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With sodium hydroxide; In N,N-dimethyl-formamide; at 105 - 120℃; for 18h; | Sodium hydroxide (0.65 g, 16.3 mmol) was added to a 105 C hot mixture of <strong>[931-86-2]5-azacytosine</strong> (1.7 g, 13.4 mmol) and trifluoromethyloxirane (21) (1.5 g, 13.4 mmol) in DMF (80 mL). The mixture was heated to 110-120 C for 18 h, then evaporated, and the residue was chromatographed on silica gel in S4. Yield: 2.2 g (73%) of a white amorphous solid. IR: (KBr) nmax 6422, 3210, 1694, 1640, 1512, 1481, 1049, 1132 cm1. ESIMS m/z 225.1 (M 1) (100).HRMS m/z (ESI) calcd. for C6H8O2N4F3 (M 1) 225.0599, found225.0594.1H NMR (500.0 MHz, DMSO-d6): 3.61 (dd, 1H, Jgem 13.6,J1b,2 9.5, H-1b); 4.08 (dd, 1H, Jgem 13.6, J1a,2 2.9, H-1a); 4.24(m, 1H, H-2); 6.74 (d, 1H, JOH,2 6.6, OH); 7.50, 7.51 (2 bd, 2 1H,Jgem 2.3, NH2); 8.19 (s, 1H, H-6). 13C NMR (125.7 MHz, DMSO-d6):46.7 (CH2-1; 65.98 (q, JC,F 29.7, CH-2); 125.0 (q, JC,F 283.1, C-3);154.0 (C-2); 160.0 (CH-6); 166.7 (C-4). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With ammonium sulfate; for 2.5h;Inert atmosphere; Reflux; | <strong>[931-86-2]5-azacytosine</strong> 81.79 g (729.69 mmol),Hexamethyldisilazane 800mL,3.37 g (25.51 mmol) of ammonium sulfate was added2 liters in the reaction bottle,Heated back to clarification under nitrogen protection,Continue to reflux for 2.5 h.Excess hexamethyldisilazane is distilled off under reduced pressure.Adding 1 L of toluene twice and vacuum distillation to remove residual hexamethyldisilazane.2,4-Di(trimethylsiloxy)-<strong>[931-86-2]5-azacytosine</strong> was obtained, which was used. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
2.7 g; 630 mg | Preparation: HMDS (21.97 mL, 105 mmol) was added to azacytosine (2.91 g, 26.2 mmol) and ammonium sulfate (0.115 g, 0.873 mmol), and the resulting mixture was stirred at 130 C for 20 h. Excess HMDS was removed under reduced pressure and the remaining residue was suspended in l,2-dichloroethane (50 mL). Meanwhile, hydrobromic acid (33% in acetic acid) (3.45 mL, 20.96 mmol) was added to a solution of (35,45,5^)-4-((tert-butyldiphenylsilyl)oxy)-5-(((tert- butyldiphenylsilyl)oxy)methyl)-3-fluorotetrahydrothiophen-2-yl acetate (11) (6 g, 8.73 mmol) in l,2-dichloroethane (50 mL) and the resulting mixture was stirred at 0C for 2 h. The reaction was quenched with the addition of 75 mL saturated sodium bicarbonate and the mixture was stirred vigorously for 15 min. The layers were separated and the organic layer was dried over anhydrous magnesium sulfate. The solution of intermediate bromide was added to the suspension of silylated azacytosine in a single portion and the white suspension was warmed to 84C. The suspension became a light slurry as the reaction came to temperature. The reaction was stirred for 5 h at 84C. The reaction was cooled to rt overnight, diluted with 75 mL saturated sodium bicarbonate, and stirred for 10 minutes. The slurry was filtered through a bed of Celite diatomaceous earth and the filter pad was washed with fresh dichloromethane. The layers were separated and the organic layer was dried over anhydrous magnesium sulfate, and concentrated in vacuo to give 5.3 g of an off- white foam. The crude material was dissolved in a minimum amount of dichloromethane, was loaded onto a 50 G UltraSil SNAP cartridge, and was eluted into 27 mL fractions with a 10-65% ethyl acetate/dichloromethane gradient on a Biotage system. Fractions 19-33 were combined and concentrated to afford 2.7 g (42%) of a white foam. H-NMR indicated the material is a 2:1 b/a mixture. The white foam was dissolved in 10 mL absolute ethanol (EtOH) and was stirred for 2 h at rt as a fine white solid crystallized from the mixture. The solid was collected, washed with a small amount of EtOH, and dried on the filter to give 630 mg (9%) of pure C-l alpha anomer as a white solid. The mother liquor was concentrated in vacuo to give 2.07 grams (32%) of the title compound 12 as a white foam (> 20:1 C-l Beta anomer). This material was used without additional fractionation. Proton, C-l Alpha Anomer: 1 H NMR (400 MHz, Chloroform-d) d 8.85 (s, 1H), 7.53 (ddd, J = 14.6, 8.0, 4.2 Hz, 6H), 7.48 - 7.25 (m, 14H), 6.75 (s, 1H), 6.10 (dd, J = 14.0, 1.8 Hz, 1H), 5.72 (s, 1H), 5.09 (dt, J = 46.7, 2.0 Hz, 1H), 4.30 (m, 1H), 3.97 - 3.88 (m, 1H), 3.47 (dd, J = 10.2, 6.6 Hz, 1H), 3.43 - 3.33 (m, 1H), 0.96 (m,18H). Fluorine, C-l Alpha Anomer: 19F NMR (376 MHz, Chloroform- |
Tags: 931-86-2 synthesis path| 931-86-2 SDS| 931-86-2 COA| 931-86-2 purity| 931-86-2 application| 931-86-2 NMR| 931-86-2 COA| 931-86-2 structure
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