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[ CAS No. 89402-42-6 ] {[proInfo.proName]}

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Chemical Structure| 89402-42-6
Chemical Structure| 89402-42-6
Structure of 89402-42-6 * Storage: {[proInfo.prStorage]}
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Product Details of [ 89402-42-6 ]

CAS No. :89402-42-6 MDL No. :MFCD04972837
Formula : C6H2F5N Boiling Point : -
Linear Structure Formula :- InChI Key :XIFCGIKPAAZFFS-UHFFFAOYSA-N
M.W : 183.08 Pubchem ID :13421547
Synonyms :

Calculated chemistry of [ 89402-42-6 ]

Physicochemical Properties

Num. heavy atoms : 12
Num. arom. heavy atoms : 6
Fraction Csp3 : 0.17
Num. rotatable bonds : 1
Num. H-bond acceptors : 6.0
Num. H-bond donors : 0.0
Molar Refractivity : 29.16
TPSA : 12.89 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : Yes
P-gp substrate : No
CYP1A2 inhibitor : Yes
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -5.81 cm/s

Lipophilicity

Log Po/w (iLOGP) : 1.67
Log Po/w (XLOGP3) : 2.27
Log Po/w (WLOGP) : 4.37
Log Po/w (MLOGP) : 2.44
Log Po/w (SILICOS-IT) : 3.25
Consensus Log Po/w : 2.8

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 2.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -2.71
Solubility : 0.358 mg/ml ; 0.00195 mol/l
Class : Soluble
Log S (Ali) : -2.18
Solubility : 1.22 mg/ml ; 0.00665 mol/l
Class : Soluble
Log S (SILICOS-IT) : -3.47
Solubility : 0.062 mg/ml ; 0.000339 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 1.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 2.13

Safety of [ 89402-42-6 ]

Signal Word:Danger Class:3
Precautionary Statements:P210-P261-P305+P351+P338 UN#:1993
Hazard Statements:H225-H302-H315-H319-H335 Packing Group:
GHS Pictogram:

Application In Synthesis of [ 89402-42-6 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 89402-42-6 ]
  • Downstream synthetic route of [ 89402-42-6 ]

[ 89402-42-6 ] Synthesis Path-Upstream   1~6

  • 1
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YieldReaction ConditionsOperation in experiment
47.6% With potassium carbonate; cesium fluoride In dimethyl sulfoxide at 80 - 110℃; for 48 h; Inert atmosphere 1500 ml of DMSO, 363 g of cesium fluoride and 8 g of potassium carbonate were added to a 5000 ml reaction flask, heated in an oil bath, and depressurizedDMSO 600ml was concentrated and cooled to below 80°C. Under nitrogen protection, 318g (1.58 mol) of 2,3-dichloro-5-trifluoromethylpyridine was added and reacted at about 110°C for 48 hours. The yellow liquid was added with 600 ml of water, and the liquid was separated. The organic phase was dried over anhydrous magnesium sulfate. The crude product was filtered to obtain 188 g. Distillation yielded 139 g of a 100-102° C. fraction, which was 2,3-difluoro-5-trifluoromethylpyridine. The yield was 47.6percent.
40% With potassium carbonate; cesium fluoride In 1-methyl-pyrrolidin-2-one at 110 - 120℃; for 15 - 24 h; EXAMPLE 3; 2,3-difluoro-5-trifluoromethylpyridine (12-2); Equipment:; 2.5 l four-necked round bottom flask equipped with a thermometer, a mechanical stirrer a dropping funnel and an inert gas supply150 ml N-methyl-2-pyrrolidinone was evaporated at 110° C. and 25-30 mbar from a suspension of 2 l N-methyl-2-pyrrolidinone, 28 g potassium carbonate (202.6 mmol), and 615.0 g cesium fluoride (4.0 mol). The reaction mixture was treated with 170.0 g 2,3-dichloro-5-trifluoromethylpyridine (12-1, 779.2 mmol) and stirred at 120° C. for 24 h.The product 12-2 was directly distilled out of the reaction suspension at 95 to 110° C. and 40-50 mbar yielding 190 g of 12-2 as a mixture. 190 g of this mixture were extracted with 200 ml pentane and 400 ml water. After separation of the phases, the water phase was extracted with 2 l pentane. The combined pentane phase was distilled on a Sulzer-column at 40 to 100° C. yielding 60.0 g (40.4percent) of 12-2.GC analysis: 99.9 area-percent of 12-2; 4. Optimized Procedure to Difluoro Trifluoromethyl Pyridine (12-2); The synthesis of the 12-2 was elaborated starting from the corresponding dichloro compound 12-1 or from the very expensive chloro-fluoro compound 12-3. The reactivity of the chloro atom in the 2-position of 12-1 is significant higher compared with the chloro atom in the 3-position. Based on the known safety issue of DMSO in combination with bases like K2CO3 at high temperatures like 120° C., DMSO was substituted by N-methylpyrrolidinone (NMP). The heterogenic reaction is very water-sensitive. Traces of water led to longer reaction time and/or incomplete conversion. Longer reaction time (more than 17 h at 120° C.) or higher temperature led, due to the instability of the product 12-2, to several unknown by-products, ending up as a black tar in the reaction vessel. Therefore, it was necessary to work with water free solvent. A substantial amount of CsF was needed for this reaction. CsF is very hygroscopic and contaminated the reaction mixture with water. Therefore, to completely eliminate water from the reaction mixture, a defined amount of NMP was evaporated prior to the addition of dichloro compound 12-1 to the suspension of K2CO3 and CsF in NMP.
Reference: [1] Patent: CN104628679, 2018, B, . Location in patent: Paragraph 0061; 0064; 0065
[2] Patent: US2008/221327, 2008, A1, . Location in patent: Page/Page column 6; 9
  • 2
  • [ 584-08-7 ]
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Reference: [1] Patent: US4625035, 1986, A,
[2] Patent: US4480102, 1984, A,
  • 3
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Reference: [1] Patent: US4831148, 1989, A,
  • 4
  • [ 124-38-9 ]
  • [ 584-08-7 ]
  • [ 72537-17-8 ]
  • [ 89402-42-6 ]
Reference: [1] Patent: US4480102, 1984, A,
  • 5
  • [ 72537-17-8 ]
  • [ 89402-42-6 ]
Reference: [1] Patent: US2008/221327, 2008, A1, . Location in patent: Page/Page column 6
  • 6
  • [ 89402-42-6 ]
  • [ 845614-11-1 ]
YieldReaction ConditionsOperation in experiment
28 g With potassium carbonate In acetonitrile for 4 h; Reflux The above oil, 11 g of 2,3-difluoro-5-trifluoromethylpyridine, 16 g of potassium carbonate and 350 ml of acetonitrile were added to a 1000 ml reaction flask, stirred, and heated under reflux for 4 hours. Cool and filter. The filtrate was concentrated to dryness to give a yellow oil which was recrystallized from ethanol to give 28 g of a white solid, which was the target product, Bitopertin. The total yield was 80.4percent.
Reference: [1] Patent: CN104628679, 2018, B, . Location in patent: Paragraph 0101; 0105
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