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[ CAS No. 39093-93-1 ] {[proInfo.proName]}

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Chemical Structure| 39093-93-1
Chemical Structure| 39093-93-1
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Product Details of [ 39093-93-1 ]

CAS No. :39093-93-1 MDL No. :MFCD05861623
Formula : C4H9NO2S Boiling Point : -
Linear Structure Formula :- InChI Key :NDOVLWQBFFJETK-UHFFFAOYSA-N
M.W : 135.18 Pubchem ID :6484228
Synonyms :

Calculated chemistry of [ 39093-93-1 ]

Physicochemical Properties

Num. heavy atoms : 8
Num. arom. heavy atoms : 0
Fraction Csp3 : 1.0
Num. rotatable bonds : 0
Num. H-bond acceptors : 3.0
Num. H-bond donors : 1.0
Molar Refractivity : 34.91
TPSA : 54.55 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : No
P-gp substrate : No
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -7.87 cm/s

Lipophilicity

Log Po/w (iLOGP) : 0.79
Log Po/w (XLOGP3) : -1.05
Log Po/w (WLOGP) : -0.3
Log Po/w (MLOGP) : -0.89
Log Po/w (SILICOS-IT) : 0.41
Consensus Log Po/w : -0.21

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 2.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -0.02
Solubility : 130.0 mg/ml ; 0.962 mol/l
Class : Very soluble
Log S (Ali) : 0.39
Solubility : 334.0 mg/ml ; 2.47 mol/l
Class : Highly soluble
Log S (SILICOS-IT) : -0.93
Solubility : 15.7 mg/ml ; 0.116 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 0.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 1.94

Safety of [ 39093-93-1 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P280-P305+P351+P338 UN#:N/A
Hazard Statements:H302-H315-H319-H332-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 39093-93-1 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 39093-93-1 ]
  • Downstream synthetic route of [ 39093-93-1 ]

[ 39093-93-1 ] Synthesis Path-Upstream   1~11

  • 1
  • [ 215791-95-0 ]
  • [ 39093-93-1 ]
YieldReaction ConditionsOperation in experiment
82% With trifluoroacetic acid In dichloromethane at 25℃; for 5 h; To the solution of 11 (5.8g, 0.024mol) in 22 DCM (50mL) was added 21 trifluoroacetic acid (70mL). The resulted mixture stirred for 5hat 25°C until completion of the reaction by TLC. Then the resulted mixture was concentrated under reduced pressure. 13 Water (30mL) was added and the mixture basified to PH 8.0 with ammonia solution, then the misture was extracted three times with DCM(50mL×3). The organic extracts were combined, washed with water and brine, dried over MgSO4, filtered, and concentrated under reduced pressure to yield 6h as a white solid in 82percent yield. MS (ESI) m/z(percent): 136.0 [M+H]+.
Reference: [1] European Journal of Medicinal Chemistry, 2018, vol. 158, p. 247 - 258
[2] Patent: US2006/100426, 2006, A1, . Location in patent: Page/Page column 17
[3] Patent: US2006/135764, 2006, A1, . Location in patent: Page/Page column 21
[4] Patent: US2006/100236, 2006, A1, . Location in patent: Page/Page column 19
[5] Patent: US2006/199839, 2006, A1, . Location in patent: Page/Page column 21
[6] Patent: WO2005/80389, 2005, A1, . Location in patent: Page/Page column 35
  • 2
  • [ 123-90-0 ]
  • [ 39093-93-1 ]
YieldReaction ConditionsOperation in experiment
93% With sodium hydroxide; oxone In HOCH3; water Example 11
Synthesis of 1-amino-3-(1,1-dioxo-λ6-thiomorpholin-4-yl)-propan-2-ol
To the solution of thiomorpholine (5.0 g, 48.7 mmol) in HOCH3 (200 mL) was added the solution of oxone (36.0 g, 58.5 mmol) in H2O (100 mL).
The mixture was well stirred at 40° C. for 48 h and then cooled to 0° C.
Aqueous NaOH was added dropwise to adjust pH=12.
Solid was filtered out and washed with HOCH3 (3*40 mL).
The combined liquid was condensed and purified by flash chromatograph on silica gel (CHCl3/CH30H/NH3.H2O=3/1/0.1-2/1/0.1) to give thiomorpholine 1,1-dioxide (6.2 g)in 93percent yield. 1H NMR (DMSO-d6) δ 2.97 (m, 4H), 3.07 (m, 4H), 3.42 (brs, 1H), MS (m/z) 136 (M+1).
Reference: [1] Patent: US2003/92917, 2003, A1,
[2] Tetrahedron Letters, 1995, vol. 36, # 6, p. 833 - 836
[3] Patent: WO2004/104001, 2004, A2, . Location in patent: Page 59
[4] Patent: WO2005/89771, 2005, A1, . Location in patent: Page/Page column 37
  • 3
  • [ 220655-09-4 ]
  • [ 39093-93-1 ]
Reference: [1] Patent: EP1522540, 2005, A1, . Location in patent: Page/Page column 70
  • 4
  • [ 107-61-9 ]
  • [ 39093-93-1 ]
Reference: [1] Monatshefte fuer Chemie, 1981, vol. 112, p. 643 - 657
  • 5
  • [ 5967-90-8 ]
  • [ 39093-93-1 ]
Reference: [1] Journal of Medicinal Chemistry, 1994, vol. 37, # 7, p. 913 - 923
  • 6
  • [ 123-90-0 ]
  • [ 39213-13-3 ]
  • [ 39093-93-1 ]
Reference: [1] Catalysis Letters, 2017, vol. 147, # 9, p. 2313 - 2318
  • 7
  • [ 17688-68-5 ]
  • [ 39093-93-1 ]
Reference: [1] Journal of the Chemical Society, 1949, p. 3433,3439
  • 8
  • [ 39093-93-1 ]
  • [ 540-51-2 ]
  • [ 26475-62-7 ]
YieldReaction ConditionsOperation in experiment
60%
Stage #1: With potassium carbonate In acetonitrile at 20℃; for 0.5 h;
Stage #2: Reflux
To a stirred solution of 2-bromoethan-l-ol (11.78 mL, 165.92 mmol, 7.0 eq) in acetonitrile (68 ml) was added potassium carbonate (9.8 g, 71.10 mmol, 3.0 eq). The reaction mixture was stirred for about 30 minutes at room temperature then added thiomorpholine 1,1- dioxide (3.2 g, 23.70 mmol, 1.0 eq). The reaction mixture was refluxed for overnight. TLC indicated starting material was consumed and the desired product was observed. The reaction mixture was cooled to room temperature and filtered. The filtrate was concentrated to get crude residue which was purified by column chromatography by using 3percent MeOH in DCM as an eluent to afford the desired compound (2.5 g, yield: 60.0percent) as a brown colour liquid. 1H NMR (DMSO-d6, 300 MHz): δ 4.50 (t, 1H), 3.51 (q, 2H), 3.07 (m, 4H), 2.95 (m, 4H) and 2.58 (t, 2H); Mass: [M+H]+180.19 (10percent).
Reference: [1] Patent: WO2017/149518, 2017, A1, . Location in patent: Page/Page column 24; 25
  • 9
  • [ 39093-93-1 ]
  • [ 37595-74-7 ]
  • [ 456-64-4 ]
Reference: [1] Russian Journal of Organic Chemistry, 2003, vol. 39, # 8, p. 1180 - 1182
  • 10
  • [ 39093-93-1 ]
  • [ 1159600-32-4 ]
  • [ 1159600-41-5 ]
YieldReaction ConditionsOperation in experiment
86%
Stage #1: With 1,1'-carbonyldiimidazole In tetrahydrofuran at 20℃; for 1 h;
Stage #2: With dmap; triethylamine In tetrahydrofuranReflux
Example 4
Preparation of Form A
700.0 g of 6-[3-(4-fluoro-phenyl)-5-methyl-isoxazol-4-ylmethoxy]-nicotinic acid (Ex. 1 step f), 10 L of THF and 469.0 g of 1,1-carbodiimidazol were stirred at ambient temperature for one hour. 407.0 g of thiomorpholine-S,S-dioxide, 12.0 g of 4-dimethylaminopyridine and 340 mL of triethylamine p.a. were added successively and refluxed under stirring over two nights. Additional 82.0 g of thiomorpholine-S,S-dioxide and 68.0 mL of triethylamine p.a. were added and further refluxed under stirring overnight (o.n.). The experiment was cooled down to approx. 30° C. 10 L of desalinated water and 16 L of ethanol were added successively. The emerging solution was cooled down to 20° C., seeded with 12 g of Form A and stirred at ambient temperature for 30 min. The suspension was reduced to 16 L at max. 35° C. In order to replace THF, 20 L of ethanol were added. The suspension was stirred at ambient temperature o.n. and then filtrated. The filter cake was rinsed with 7.4 L of a 1:1 desalinated water/ethanol mixture and dried at 50° C. o.n. yielding 820 g of Form A (86percent).
55% With O-(benzotriazol-1-yl)-N,N,N',N'-tetramethyluronium tetrafluoroborate; N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 20℃; for 1 h; To a solution of 6-[3-(4-fluoro-phenyl)-5-methyl-isoxazol-4-ylmethoxy]-nicotinic acid (99 mg, 0.33 mmol (69 mg, 0.2 mmol)) in DMF (300 μ.) were added 2-(lH-benzotriazole-l-yl)-l, 1,3,3- tetramethyluronium tetrafluoroborate (71 mg, 0.22 mmol), Ν,Ν-diisopropyl ethyl amine (171 μ, 1.0 mmol) and thiomorpholine-S,S-dioxide (17.3 μ, 0.22 mmol). The resulting reaction mixture was stirred for 1 h at room temperature. Concentration and purification by chromatography (Si02, heptane:ethyl acetate = 100:0 to 1: 1) afforded the title compound (73 mg, 55percent) as a white solid. MS: m/e = 446.1 [M+H]+.
55% With O-(benzotriazol-1-yl)-N,N,N',N'-tetramethyluronium tetrafluoroborate; N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 20℃; for 1 h; Step g: crystalline (U-dioxo-1 6-thiomorpholin-4-yl)-{6-r3-(4-fluoro-phenyl)-5-methyl-isoxazol-4-ylmethoxyl-pyridin-3-yl|-methanone in anhydrous polymorphic form A (Form A ({drug4a})) To a solution of 6-[3-(4-fluoro-phenyl)-5-methyl-isoxazol-4-ylmethoxy]-nicotinic acid (99 mg, 0.33 mmol (69 mg, 0.2 mmol)) in DMF (300 µ) were added 2-(1H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium tetrafluoroborate (71 mg, 0.22 mmol), N,N-diisopropyl ethyl amine (171 µl, 1.0 mmol) and thiomorpholine-S,S-dioxide (17.3 µl, 0.22 mmol). The resulting reaction mixture was stirred for 1 h at room temperature. Concentration and purification by chromatography (Si02, heptane:ethyl acetate = 100:0 to 1: 1) afforded the title compound (73 mg, 55percent) as a white solid. MS: m/e = 446.1 [M+H]+.
Reference: [1] Patent: US2013/172329, 2013, A1, . Location in patent: Paragraph 0251
[2] Patent: WO2013/57124, 2013, A1, . Location in patent: Page/Page column 34
[3] Patent: EP2792360, 2014, A1, . Location in patent: Paragraph 0168
  • 11
  • [ 39093-93-1 ]
  • [ 1206163-59-8 ]
  • [ 1206161-97-8 ]
YieldReaction ConditionsOperation in experiment
95% With diisopropylamine In methanol; dichloromethane at 20℃; for 16 h; Inert atmosphere The starting material [5-(4-bromomethyl-phenyl)- l ,2,4]triazolo[l ,5-a]pyridine-2- yl] amide (1 g; 2.7 mmol leq) and diisopropylamine (0.92 raL; 5.4 mmol 2eq) were dissolved in a methanol/ dichloromethane mixture (1 :5; 1.7 mL/8.5 mL) and stirred under N2 at room temperature for 10 minutes. Thiomorpholine dioxide (0.4 g; 3 mmol 1.1 eq) was added. The yellow solution was stirred at room temperature for 16 hours. The solvent was evaporated. The compound was dissolved in dichloromethane (80 mL), washed with water (30 mL) and dried over MgS04 (~5min). MgS04 was filtrated off and the product solution was evaporated, yielding a white solid raw product (1.09 g, 95percent oftheory).
92% With N-ethyl-N,N-diisopropylamine In methanol; dichloromethane at 23℃; [5-(4-bromomethyl-phenyl)-l,2,4]triazolo[l,5-a]pyridine-2-yl] amide (9 g; 24 mmol) was dissolved in a mixture of methanol (15 ml) and dichloromethane (75 ml). Diisopropylethylamine (8.25 ml; 48.5 mmol) was added. Thiomorpholine dioxide (3.61 g; 26.7 mmol) was added in one portion. The mixture was stirred over night at 23°C. After completion of the reaction the solvent was evaporated. The grey compound was suspended in a mixture of ethyl acetate (100 ml) and methanol (10 ml) and stirred for 2 hours at 23°C. The product was filtered dried under vacuum at 17 mbar and 50°C for 3 hours. Yield: 9.53 g (92percent of theory) purity (HPLC/UV, method A, 98.6percent tr= 2.2 min, λ=230 nm): 1H-NMR (400 MHz, DMSO-rf6) 0.74 - 0.86 (m, 4 H) 2.01 (br. s„ 1 H) 2.91 (s, 4 H) [δ ppm] 3.10 - 3.15 (m, 4 H) 3.75 (s, 2 H) 7.27 (dd, J=6.26, 1.56 Hz, 1 H)7.50 (d, J=8.21 Hz, 2 H) 7.65 - 7.71 (ni, 2 H) 7.97 (d, J=8.21 Hz, 2 H) 11.02 (br. s., 1 H) FT-IR (ATR) [cm" 1] 3288, 3230, 3188, 3088, 3057, 3003 , 2935, 2843, 2820, 1699, 1635 , 1576, 1552, 1525 , 1495, 1398, 1369, 1333, 1321 , 1298, 1269, 1215, 1186, 1 157 , 1 126, 1 1 13, 1084, 1053, 1038, 1020, 978, 962, 941 , 891 , 862, 854, 822, 779, 729, 677, 656, 631 , 625, 615 XRPD 1 st priority reflections 7. 1 , 8.1 , 10.8, 18.4, 27.3°2Θ 2nd priority reflections 14.2, 16.2, 17.2, 19.8 , 25.2°2Θ DSC endotherms (onset T) :214°C; 319°C (br.) residual solvent content 0.5.-2percent (dichloromethane)
Reference: [1] Patent: WO2017/12773, 2017, A1, . Location in patent: Page/Page column 25; 26; 27; 28; 29
[2] Patent: WO2017/12771, 2017, A1, . Location in patent: Page/Page column 33-34
[3] Patent: US2010/331319, 2010, A1, . Location in patent: Page/Page column 13-14
[4] Patent: US2010/331319, 2010, A1, . Location in patent: Page/Page column 14-15
[5] Drugs of the Future, 2014, vol. 39, # 8, p. 547 - 551
[6] Patent: US2015/224199, 2015, A1, . Location in patent: Paragraph 0287-0288
[7] Patent: US2015/225398, 2015, A1, . Location in patent: Paragraph 0278; 0279
[8] Patent: WO2016/165952, 2016, A1, . Location in patent: Paragraph 0172
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