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CAS No. : | 356058-42-9 | MDL No. : | MFCD21337366 |
Formula : | C16H15FN2O3S | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | DJGRXBDYBUKPOC-UHFFFAOYSA-N |
M.W : | 334.37 | Pubchem ID : | 9880779 |
Synonyms : |
|
Num. heavy atoms : | 23 |
Num. arom. heavy atoms : | 12 |
Fraction Csp3 : | 0.31 |
Num. rotatable bonds : | 5 |
Num. H-bond acceptors : | 5.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 85.13 |
TPSA : | 97.49 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.74 cm/s |
Log Po/w (iLOGP) : | 1.62 |
Log Po/w (XLOGP3) : | 2.26 |
Log Po/w (WLOGP) : | 2.52 |
Log Po/w (MLOGP) : | 2.5 |
Log Po/w (SILICOS-IT) : | 3.29 |
Consensus Log Po/w : | 2.44 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.56 |
Log S (ESOL) : | -3.39 |
Solubility : | 0.135 mg/ml ; 0.000405 mol/l |
Class : | Soluble |
Log S (Ali) : | -3.94 |
Solubility : | 0.0381 mg/ml ; 0.000114 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -4.62 |
Solubility : | 0.00793 mg/ml ; 0.0000237 mol/l |
Class : | Moderately soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 0.0 |
Synthetic accessibility : | 3.11 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | Stage #1: With sodium carbonate; sodium hydroxide In water; isopropyl alcohol at 40℃; for 2.5 h; Stage #2: With formic acid In water; isopropyl alcohol at 20℃; for 2.5 h; |
Example 7 - Alternative method for making (2-[(4-Fluorophenyl)methyl]thio}-4-oxo-4,5,6,7- tetrahydro-lHcyclopenta[d]pyrimidin-l-yl)acetic acid) (4-Oxo-2-thioxo-2,3,4,5,6,7-hexahydro-lH- cyclopenta [ /]pyrimidin-l-yl)acetic acid (20.0 g, 1.0 eq) was slurried in a mixture of water (112 mL) and isopropyl alcohol (20 mL). NaOH solution (50.9percent aqueous, 13.82 g, 1.99 eq) was added followed by a water line wash (10 mL) resulting in a solution. Then Na2C03 (1.50 g, 0.16 eq) was charged and the solution was heated to 40+/-3° C. Thereafter 4-fluorobenzyl chloride (13.4 g, 1.05 eq) was added, followed by a line wash of isopropyl alcohol (12 mL) and the reaction mixture was stirred at 40+/-3° C until the reaction was deemed complete ( ~2.5 hours). The reaction mixture was cooled to 20+/-3° C and formic acid (2.4 g, 0.6 eq) was added resulting in crystallisation of the product within 30 minutes. A second charge of formic acid (6.9 g, 1.7 eq) was added over 1 hour and the slurry was stirred at 20+/-3° C for at least one hour. The slurry was filtered to isolate the product, which was washed twice with a mixture of water (32 mL) and isopropyl alcohol (8 mL), then with isopropyl alcohol (40 mL) and dried in vacuo at 50° C to yield the title compound as an off-white solid (28.6 g, 97percentth). 1H NM R (d6 DMSO) δ 1.95 (2H, m), 2.57 (2H, t), 2.85 (2H, t), 4.4 (2H, s), 4.7 (2H, s), 7.15 (2H, dd), 7.45 (2H, dd), ~13.6 (1H, vbrs). |
76% | With potassium carbonate; potassium hydroxide In water; isopropyl alcohol at 40℃; for 3 h; | Compound 1 (0.3603 g, 1.6 mmol, 1 eq) was stirred in a mixture of water (2 mL) and isopropyl alcohol (360 μL). KOH aqueous solution (50percent w/v, 500 μL, 1.9 eq) was added. K2CO3 (0.0332 g, 0.24 mmol, 0.15 eq) was added and the solution was heated to 40° C. Then 4-fluorobenzyl chloride (0.2197 g, 1.52 mmol, 0.95 eq) was added and the reaction was stirred at 40 °C for 3 hours. The reaction was cooled to room temperature and formic acid (30 μL, 0.8 mmol, 0.5 eq) was added to crystallize the product. After 30 min, more formic acid (103 μL, 2.7 mmol, 1.7 eq) was slowly added and the reaction was stirred for at least an hour until crystallization was complete. The product was isolated through filtration and washed twice with a 4:1 mixture of water and isopropyl alcohol (1 mL), then with isopropyl alcohol (1 mL). The product was stirred in ether for 2 hours to remove remaining organic impurities and filtered again. Product was dried in vacuo at 50 °C to yield 2 (0.4082g, 1.22 mmol, 76percent). |
60% | With potassium carbonate; potassium hydroxide In Isopropyl acetate; water at 40℃; for 3 h; | Compound 1 (1 eq, 1.62 mmol) was stirred in a mixture of water (3 mL) and isopropyl alcohol (820 μL). KOH aqueous solution (50percent w/v, 1.9 eq, 3.08 mmol) was added followed by K2CO3 (0.15 eq, 0.24 mmol) and the reaction was heated to 40° C under stirring. 4-fluorobenzyl chloride (0.95 eq, 1.52 mmol) was then added and the reaction was stirred at 40° C for 3 hours. The reaction was cooled to room temperature and formic acid (0.5 eq, 0.8 mmol) was added to crystallize the product. After 1h, more formic acid (1.7 eq, 2.7 mmol) was slowly added and the reaction was stirred for an hour until crystallization was complete. The product was collected through filtration and washed twice with a 4:1 (v:v) mixture of water and isopropyl alcohol (1 mL) followed by isopropyl alcohol (1 mL). The product was stirred in ether overnight and filtered again. Product was dried at 50° C to obtain the title compound as a colourless solid (300 mg, 60percent). 1H NMR (DMSO-d6) δ: 12.54 (s, 1H), 7.47 (m, 2H), 7.11 (m, 2H), 4.65 (s, 2H), 4.45 (s, 2H), 2.82 (t, J = 7.3 Hz, 2H), 2.60 (t, J = 7.3 Hz, 2H), 1.99 (quint, J = 7.3 Hz, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
4.3 g | With lithium hydroxide monohydrate; water In isopropyl alcohol at 20℃; for 2 h; | General procedure: Intermediate A4- 2-(2-(4-fluorobenzylthio)-4-oxo-4,5,6,7-tetrahydro-1H-cyaopenta[d]pyrimidin-1-yl)acetic acid A solution of intermediate A3 (6.9g, 1equiv), LiOH·H2O (2.5g, 3equiv) in isopropanol/water (1:2, 60ml) was stirred at room temperature for 2h to obtain a clear solution. The solution was acidified with concd. HCl to pH<3 in an ice bath, the solid thus obtained was collected by filtration, washed with water several times and the moisture was evacuated as much as possible. The solid was transferred to a 100 mL flask and 30 ml acetone was added to obtain a mixture, which was refluxed for 0.5 h. Then the mixture was placed in refrigerator for several hours until the recrystallization was complete. The solid obtained was filtered and washed by acetone, then dried to afford the title compound as a white solid (4.3g). 1H-NMR (d6-DMSO, 300 MHz) δ1.96(m 2H), 2.58 (t, 2H, J=7.2), 2.82 (t, 2H, J=7.5), 4.42 (s, 2H), 4.69 (s, 2H), 7.13 (t, 2H, J=9.0), 7.47 (dd, 2H, J=8.9 ,5.6), 13.5 (vbrs, 1H); MS (ESI): 333 (M-H). |
4.3 g | With lithium hydroxide monohydrate In water; isopropyl alcohol at 20℃; for 2 h; | A solution of intermediate A3 (6.9 g, 1 equiv), LiOH.H20 (2.5 g, 3 equiv) in isopropanol/water (1:2, 60 ml) was stirred at room temperature for 2 h to obtain a clear solution. The solution was acidified with concd. HC1 to pH<3 in an ice bath, the solid thus obtained was collected by filtration, washed with water several times and the moisture was evacuated as much as possible. The solid was transferred to a100 mE flask and 30 ml acetone was added to obtain a mixture, which was refluxed for 0.5 h. Then the mixture was placed in refrigerator for several hours until the recrystallization was complete. The solid obtained was filtered and washed by acetone, then dried to afford the title compound as a white solid (4.3 g). ‘H-NMR (d5-DMSO, 300 MHz) öl.96 (m, 2H), 2.58 (t, 2H, J=7.2), 2.82 (t, 2H, J=7.5), 4.42 (s, 2H), 4.69 (s, 2H), 7.13 (t, 2H, J=9.0), 7.47 (dd, 2H, J8.9, 5.6),13.5 (vbrs, 1H); MS (ESI): 333 (M—H). |
[ 6328-58-1 ]
6-Methyl-2-(methylthio)-1H-pyrimidin-4-one
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