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CAS No. : | 23612-57-9 | MDL No. : | MFCD05663510 |
Formula : | C6H8N2O | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | FEIACFYXEWBKHU-UHFFFAOYSA-N |
M.W : | 124.14 | Pubchem ID : | 11159325 |
Synonyms : |
|
Num. heavy atoms : | 9 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.17 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 2.0 |
Num. H-bond donors : | 2.0 |
Molar Refractivity : | 34.77 |
TPSA : | 59.14 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.94 cm/s |
Log Po/w (iLOGP) : | 1.06 |
Log Po/w (XLOGP3) : | 0.17 |
Log Po/w (WLOGP) : | 0.01 |
Log Po/w (MLOGP) : | -0.34 |
Log Po/w (SILICOS-IT) : | 0.49 |
Consensus Log Po/w : | 0.28 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.14 |
Solubility : | 8.91 mg/ml ; 0.0718 mol/l |
Class : | Very soluble |
Log S (Ali) : | -0.97 |
Solubility : | 13.3 mg/ml ; 0.107 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -1.45 |
Solubility : | 4.39 mg/ml ; 0.0354 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.17 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | With manganese(IV) oxide In dichloromethane at 20℃; | Preparation Example J-4. 2-Aminopyridine-3-carbaldehyde To a mixture of (2-aminopyridin-3-yl)-methanol described in Preparation Example J-3 (130mg,1.1mmol) and dichloromethane (10mL) was added manganese dioxide (1.3g, 15mmol) at room temperature, and the solution was stirred overnight. The reaction solution was filtered through Celite pad, then, the solvent was evaporated in vacuo, and the title compound (108mg, 0.88mmol, 83percent) was obtained as a white solid. 1H-NMR Spectrum (CDCl3) δ (ppm): 6.75 (1 H, dd, J=4.9, 7.5Hz), 7.83 (1H, dd, J=1.9, 7.5Hz), 8.23 (1 H, dd, J=1.9, 4.9Hz), 9.86 (1 H, s). |
83% | With manganese(IV) oxide In dichloromethane at 20℃; | To a mixture of (2-aminopyridin-3-yl)-methanol described in Preparation Example J-3 (130mg, 1.1mmol) and dichloromethane (10mL) was added manganese dioxide (1.3g, 15mmol) at room temperature, and the solution was stirred overnight. The reaction solution was filtered through Celite pad, then, the solvent was evaporated in vacuo, and the title compound (108mg, 0.88mmol, 83percent) was obtained as a white solid. 1H-NMR Spectrum (CDCl3) δ(ppm) : 6.75 (1H, dd, J=4.9, 7.5Hz), 7.83 (1H. dd, J=1.9, 7.5Hz), 8.23 (1 H, dd, J=1.9, 4.9Hz), 9.86 (1 H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With methanol; sodium tetrahydroborate In tetrahydrofuran at 65℃; for 0.25 h; Reflux | In a three-necked flask, 5 g of ethyl 2-aminonicotinate (0.0302 mol) and 80 mL of tetrahydrofuran were added, and the mixture was stirred13g sodium borohydride (0.2416mol) powder, stirring was continued at 65 ° C for 15min, was added dropwise 65mL of methanol, the reaction was refluxedThe reaction was complete by TLC (trichloromethane: methanol = 4: 1) and concentrated in vacuo while still hot. 40 mL of the mixture was distilled off and 1 gNaOH, hydrolyzed at 70-80 for 7-8h, the organic phase was separated, dried over anhydrous sodium sulfate and concentrated to give 2-amino-3-picolinateAlcohol (Intermediate A) Light yellow solid powder 2.7 g, m.p. 67.5-68 ° C, 75percent yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | Stage #1: With lithium aluminium tetrahydride In tetrahydrofuran for 18 h; Heating / reflux Stage #2: With sodium hydroxide In tetrahydrofuran; water for 0.25 h; |
To a solution of 2-aminonicotinic acid (20. 5g, 148mmol) in tetrahydrofuran (300mL) at room temperature was added lithium aluminum hydride (1. OM in tetrahydrofuran, 300mL, 300mmol) dropwise over 45 minutes. The resulting solution was heated to reflux for 18hrs. The mixture was cooled to room temperature and quenched by the sequential dropwise addition of water (11. 5mL), 15percent aqueous sodium hydroxide (11. 5mL), and water (34. 5mL). The mixture was stirred for 15min., then filtered through Celite 545. The filter pad was washed thoroughly with tetrahydrofuran (500mL) and 5percent methanol in chloroform (500mL). The combined filtrate and washings were evaporated to give 17.7g (96percent) of the title compound as a yellow waxy solid. MS (LC/MS/pos): 125.0 (M+H) +. 1H NMR (CDC13) 5 4.13 (br. s, 1H), 4.59 (s, 2H), 6.56 (m, 1H), 7.29 (d, 1H), 7.90 (d, 1H). |
96% | With lithium aluminium tetrahydride In tetrahydrofuran at 0℃; for 18 h; Reflux | To a suspension of 2-aminonicotinic acid (25.0 g, 0.18 mol) in THF (500 mL) was added L1AIH4 (13.7 g, 0.36 mol) portion-wise at 0 °C. The mixture was heated to reflux and stirred further for 18 hours, then cooled to rt, and quenched by the sequential drop wise addition of water (16 mL), NaOH aqueous solution (16 mL, 15percent), and water (50 mL). The resulted mixture was stirred at rt for 20 minutes, then filtered through a CELITE®. The filter cake was washed thoroughly with THF (100 mL) and MeOH/CHCb (1/20 (v/v), 200 mL). The combined filtrates were concentrated in vacuo to give the title compound as yellow oil (21.6 g, 96percent). MS (ESI, pos. ion) m/z: 125.0 (M +1). 1H NMR (400 MHz, CDCb): δ 3.93 (s, 2H), 4.54 (s, 2H), 5.15 (s, 1H), 6.55-6.70 (s, 1H), 7.30- 7.40 (m, 1H), 7.83-7.90 (m, 1H). |
96% | With lithium aluminium tetrahydride In tetrahydrofuran for 18 h; Reflux | The compound 2 - amino-nicotinic acid (25.0 g, 0 . 18 µM) suspended in THF (500 ml) in, cooling to 0 °C, then added to the reaction solution in the LiAlH in batches4 (13.7 G, 0 . 36 µM), heating to reflux, the reaction 18 hours, cooling to room temperature, and then sequentially dropwise adding water (16 ml), NaOH aqueous solution (16 ml, 15percent), water (50 ml) quenching the reaction, the resulting mixture stirring at room temperature 20 minutes later, for diatomite filter, the filter cake for sequentially THF (100 ml) and MeOH/CHCl3 (1/20, 200 Ml) washing, the combined filtrate is concentrated under reduced pressure to obtain the title compound as a yellow oily matter (21.6 g, 96percent). |
95% | With sodium hydroxide; LiAlH4 In tetrahydrofuran; water | a) 2-Amino-3-(hydroxymethyl)pyridine To a stirred solution of 2-aminonicotinic acid (20 g, 145 mmole) in dry THF (200 mL) under argon was added 1.0 M LiAlH4 in THF (300 mL, 300 mmole) carefully, portionwise, through a reflux condenser, over 4 hr. The reaction became exothermic and refluxed without external heating. After the addition was complete, the reaction was heated at reflux for an additional 16 hr, then was cooled to 0 °C and carefully quenched by sequential addition of H2O (12 mL), 15percent NaOH in H2O (12 mL), and H2O (35 mL). The resulting thick suspension was stirred for 1 hr, then was filtered through a pad of celite.(R).. The filter pad was rinsed with THF (300 mL), and the filtrate was concentrated to dryness to give the title compound (17.04 g, 95percent) as a pale yellow waxy solid: LCMS (ES) m/e 125.1 (M + H)+; 1H NMR (400 MHz, DMSO-d6) δ 7.84 (dd, 1 H), 7.37 (m, 1 H), 6.53 (dd, 1 H), 5.65 (br s, 2 H), 5.16 (t, 1 H), 4.34 (d, J = 4.6 Hz, 2 H). |
90% | Stage #1: With lithium aluminium tetrahydride In tetrahydrofuran at 0℃; Reflux Stage #2: With water; sodium hydroxide In tetrahydrofuran at 0℃; |
Step 1: 2-Amino-3-(hydroxymethyl)pyridineLithium aluminum hydride (12.4 g, 326.7 mmol) was portionwisely added to a suspension of 2-amino-3-carboxypyridine (30.0 g, 217.2 mmol) in THF (350 mL) at 0°C. Once the addition was completed, the reaction mixture was stirred at room temperature for 15 minutes and then at reflux overnight. The mixture was then cooled to 0°C and hydrolyzed by the successive addition of water (18 mL), a solution of sodium hydroxyde (18 mL) and water (30 mL) again. The resulting white suspension was filtered on Clarcel.(R). and the cake was washed with THF (200 mL) and a mixture of CHCI3/MeOH (250 mL, 9 : 1). After concentration to dryness of the filtrate, the title product was obtained as a yellow solid (24.2 g, 90percent).*H NMR (DMSO-c/6, 400 MHz) : δ (ppm) : 7.84 (d, J = 4Hz, 1H), 7.37 (d, J = 7.2 Hz, 1H), 6.55-6.52 (m, 1H), 5.64 (br s, NH2), 4.34 (s, 2H). |
83% | With sodium hydroxide In tetrahydrofuran; methanol; chloroform; water | a) 2-Amino-3-(hydroxymethyl)pyridine To a solution of 2-aminonicotinic acid (20.5 g, 148.1 mmole) in THF was added lithium aluminum hydride (300 mL, 1.0 M in THF) over 30 minutes. The reaction solution was heated to reflux for 18 hrs and then was cooled to room temperature. The reaction was quenched by the sequential dropwise addition of H2O (11.5 mL), 15percent NaOH (11.5 mL), and H2O (34.5 mL). The mixture was stirred for 15 min, then was filtered through celite.(R)., and the filter pad was washed thoroughly with THF followed by 5percent CH3OH/CHCl3. The filtrate was concentrated to give the title compound (15.24 g, 83percent) as a waxy light yellow solid: MS (ES) m/e 125 (M + H)+. |
83% | With sodium hydroxide In tetrahydrofuran; methanol; chloroform; water | a 2-Amino-3-(hydroxymethyl)pyridine To a solution of 2-aminonicotinic acid (20.5 g, 148.1 mmole) in THF was added lithium aluminum hydride (300 mL, 1.0 M in THF) over 30 minutes. The reaction solution was heated to reflux for 18 hrs and then was cooled to room temperature. The reaction was quenched by the sequential dropwise addition of H2O (11.5 mL), 15percent NaOH (11.5 mL), and H2O (34.5 mL). The mixture was stirred for 15 min, then was filtered through celite.(R)., and the filter pad was washed thoroughly with THF followed by 5percent CH3OH/CHCl3. The filtrate was concentrated to give the title compound (15.24 g, 83percent) as a waxy light yellow solid: MS (ES) m/e 125 (M+H)+. |
0.74 g | With lithium aluminium tetrahydride In tetrahydrofuran; diethyl ether at 0 - 20℃; for 48 h; Inert atmosphere | To a suspension of 2-aminonicotinic acid (5-Si, 1.58 g, 11.45 mmol) in THF (80 mL), LAH (1M in ether, 22.9 mL, 22.9 mmol) was added slowly at 0 °C under argon with stirring. After completion of the addition, the ice bath was removed and the mixture was stirred at room temperature. Additional LAH (1M in ether, 11.4 mL) was added after 48 hours and the reaction was again cooled with an ice bath before saturated NH4C1 aqueous solution (20 mL) was added with stirring to form slurry. The organic layer was separated by decantation and the slurry was washed with EtOAc. The combined organic layer was washed with iN NaOH aqueous solution, brine, and dried over anhydrous Na2SO4. Solvent was removed under reduced pressure to afford (2-aminopyridin-3-yl)methanol (5-S2, 0.74 g) as an off-white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
53% | With sodium hydroxide In water for 1.5 h; Heating / reflux | Preparation Example J-3. (2-Aminopyridin-3-yl)-methanol A mixture solution of N-(3-formylpyridin-2-yl)-2,2-dimethylpropionamide described in Preparation Example J-2 (500mg, 2.4mmol) and an aqueous solution of 5N sodium hydroxide (7mL) was refluxed for 90 minutes. After cooling, ethyl acetate and tetrahydrofuran were added for extraction, the organic layer was washed with brine, then, the solvent was evaporated in vacuo. The residue was purified by silica gel column chromatography (methanol: ethyl acetate = 1: 5), and the title compound (160mg, 1.2mmol, 53percent) was obtained as a pale yellow solid. 1H-NMR Spectrum (DMSO-d6) δ (ppm): 4.31 (2H, s), 5.13 (1 H, brs), 5.62 (2H, s), 6.51,(1 H, dd, J=5.0, 7.3Hz), 7.34-7.36 (1 H, m), 7.81-7.82 (1 H, m). |
53% | for 1.5 h; Heating / reflux | A mixture solution of N-(3-formylpyridin-2-yl)-2,2-dimethylpropionamide described in Preparation Example J-2 (500mg, 2.4mmol) and an aqueous solution of 5N sodium hydroxide (7mL) was refluxed for 90 minutes. After cooling, ethyl acetate and tetrahydrofuran were added for extraction, the organic layer was washed with brine, then, the solvent was evaporated in vacuo. The residue was purified by silica gel column chromatography (methanol : ethyl acetate = 1 : 5), and the title compound (160mg, 1.2mmol, 53percent) was obtained as a pale yellow solid. 1H-NMR Spectrum (DMSO-d6) δ(ppm) : 4.31 (2H, s), 5.13 (1H, brs), 5.62 (2H, s), 6.51 (1 H, dd, J=5.0, 7.3Hz), 7.34-7.36 (1 H, m), 7.81-7.82 (1H, m). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With bromine In acetic acid at 20℃; | Step 2: 2-Amino-5-bromo-3-(hydroxymethyl)pyridineBromine (8.4 mL, 189.4 mmol) was added dropwise over 1 hour to a solution of 2- amino-3-(hydroxymethyl)pyridine (19.6 g, 157.8 mmol; which may be prepared as described in Dl, Step 1) in acetic acid (350 mL) at room temperature. The reaction mixture was then stirred overnight. After concentration to dryness, the residue was partitioned between a saturated solution of potassium carbonate (300 mL) and ethyl acetate (200 ml_). The aqueous layer was separated and extracted with ethyl acetate (2 x 200 ml_). The combined organic phases were washed with a saturated solution of sodium chloride (200 ml_), dried over sodium sulfate, filtered and concentrated to dryness. After trituration of the residue in pentane, the title product was obtained as a yellow solid (27.0 g, 84percent).*H NMR (DMSO-c/6, 400 MHz) : δ (ppm) : 7.90 (d, J = 2.8 Hz, 1H), 7.53 (d, J = 2 Hz, 1H), 5.93 (br s, NH2), 5.29 (br s, OH), 4.31 (s, 2H). |
78% | With N-Bromosuccinimide In dichloromethane; chloroform | b) 2-Amino-5-bromo-3-(hydroxymethyl)pyridine To a solution of 2-amino-3-(hydroxymethyl)pyridine (13.0 g, 116.0 mmole) in CH2Cl2 (300 mL) at RT was added NBS (22.71 g, 127.6 mmole). After stirring at RT for 45 min the reaction solution was concentrated and the residue was dissolved in CHCl3. The resulting suspension was filtered and the filtrate was concentrated to a dark oil. Purification on silica gel (EtOAc) afforded the title compound (78percent, 18.36 g) as a tan solid: MS (ES) m/e 204 (M + H)+. |
78% | With N-Bromosuccinimide In dichloromethane; chloroform | b 2-Amino-5-bromo-3-(hydroxymethyl)pyridine To a solution of 2-amino-3-(hydroxymethyl)pyridine (13.0 g, 116.0 mmole) in CH2Cl2 (300 mL) at RT was added NBS (22.71 g, 127.6 mmole). After stirring at RT for 45 min the reaction solution was concentrated and the residue was dissolved in CHCl3. The resulting suspension was filtered and the filtrate was concentrated to a dark oil. Purification on silica gel (EtOAc) afforded the title compound (78percent, 18.36 g) as a tan solid: MS (ES) m/e 204 (M+H)+. |
63% | at 5 - 10℃; | S1. Acetic acid (456 g) was added to a 1 L three-necked flask at room temperature, and 2-amino-3-hydroxymethylpyridine (87 g, 1.0 eq) was added.The temperature was lowered to 5-10 ° C, and bromine (123 g, 1.1 eq) was added dropwise. After the addition was completed, the temperature was maintained, and the system was reacted for 1-2 h.After the reaction is completed, an aqueous sodium hydroxide solution is added to the reaction system, and after stirring for several minutes, sodium hydrogen sulfite is added, and suction filtration is performed.The obtained filter cake was again dispersed in water, and an aqueous sodium hydroxide solution was added until pH=8, and the system was again suction filtered.2-Amino-3-hydroxymethyl-5-bromopyridine was obtained in a yield of 63percent. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With bromine In sodium carbonate; acetic acid | b) 2-Amino-5-bromo-3-(hydroxymethyl)pyridine To a stirred solution of 2-amino-3-(hydroxymethyl)pyridine (15.0 g, 121 mmole) in HOAc (300 mL) at RT was added bromine (6.2 mL, 121 mmole) dropwise over 1 hr. A suspension formed after approximately 15 min. After the addition, the reaction was stirred for an additional 1 hr, then was concentrated under vacuum. The residue was taken up in 1.0 M Na2CO3 (500 mL), and the solution was extracted with ethyl acetate (2 x 250 mL). The combined organic layers were washed with brine, dried (Na2SO4), and concentrated to dryness. The resulting residue was triturated with a small volume of petroleum ether, filtered and dried under vacuum to give the title compound (18.45 g, 75percent) as a beige solid: LCMS (ES) m/e 203.2 (M + H)+; 1H NMR (400 MHz, DMSO-d6) δ 7.89 (d, J = 2.3 Hz, 1 H), 7.52 (s, 1 H), 5.92 (br s, 2 H), 5.29 (br s, 1 H), 4.30 (s, 2 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | at 20℃; for 1 h; | To a stirred solution of (2-aminopyridin-3-yl)methanol (22.1 g, 178 mmol) in AcOH (350 mL) was added bromine (9.0 mL, 178 mol) drop wise at rt over 1 hour. The reaction mixture was stirred at rt overnight, then filtered. The filter cake was washed with MTBE (50 mL) and dried in vacuo at 60 °C for 2 hours to give the title compound as a yellow solid (37.9 g, 75percent). MS (ESI, pos. ion) m/z: 203.0 (M-80 +1). |
75% | at 20℃; | The compound (2-aminopyridin-3-yl) methanol (22.1 g, 178 mmol)Was dissolved in AcOH (350 mL)Then at room temperature, to the reaction mixture was added dropwise bromine (9. OmL, 178mol),The reaction mixture was stirred overnight at room temperature. The reaction mixture was suction filtered, the filter cake was washed with MTABE (50 mL) and dried under vacuum at 60 ° C to give the title compound as a yellow solid (37.9 g, 75percent). |
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