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Chemical Structure| 20699-86-9
Chemical Structure| 20699-86-9
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Product Details of [ 20699-86-9 ]

CAS No. :20699-86-9 MDL No. :MFCD03618409
Formula : C10H7NO4S Boiling Point : -
Linear Structure Formula :- InChI Key :OSVZEJHBIFIMJF-UHFFFAOYSA-N
M.W : 237.23 Pubchem ID :1489057
Synonyms :

Calculated chemistry of [ 20699-86-9 ]

Physicochemical Properties

Num. heavy atoms : 16
Num. arom. heavy atoms : 9
Fraction Csp3 : 0.1
Num. rotatable bonds : 3
Num. H-bond acceptors : 4.0
Num. H-bond donors : 0.0
Molar Refractivity : 61.93
TPSA : 100.36 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : No
P-gp substrate : No
CYP1A2 inhibitor : Yes
CYP2C19 inhibitor : Yes
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -5.65 cm/s

Lipophilicity

Log Po/w (iLOGP) : 1.71
Log Po/w (XLOGP3) : 2.96
Log Po/w (WLOGP) : 2.6
Log Po/w (MLOGP) : 1.17
Log Po/w (SILICOS-IT) : 1.3
Consensus Log Po/w : 1.95

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 0.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -3.39
Solubility : 0.0958 mg/ml ; 0.000404 mol/l
Class : Soluble
Log S (Ali) : -4.73
Solubility : 0.00441 mg/ml ; 0.0000186 mol/l
Class : Moderately soluble
Log S (SILICOS-IT) : -2.81
Solubility : 0.371 mg/ml ; 0.00156 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 2.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 2.25

Safety of [ 20699-86-9 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P305+P351+P338 UN#:N/A
Hazard Statements:H302-H315-H319-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 20699-86-9 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 20699-86-9 ]
  • Downstream synthetic route of [ 20699-86-9 ]

[ 20699-86-9 ] Synthesis Path-Upstream   1~8

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  • [ 20532-28-9 ]
Reference: [1] Synthetic Communications, 1991, vol. 21, # 7, p. 959 - 964
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  • [ 19301-35-0 ]
Reference: [1] Synthetic Communications, 1991, vol. 21, # 7, p. 959 - 964
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  • [ 20699-86-9 ]
  • [ 4965-26-8 ]
Reference: [1] Synthetic Communications, 1991, vol. 21, # 7, p. 959 - 964
[2] Journal of Medicinal Chemistry, 1990, vol. 33, # 9, p. 2621 - 2629
[3] Bioorganic and Medicinal Chemistry, 2016, vol. 24, # 3, p. 403 - 427
  • 4
  • [ 2365-48-2 ]
  • [ 6361-21-3 ]
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YieldReaction ConditionsOperation in experiment
95% With potassium carbonate In N,N-dimethyl-formamide at 20℃; To a solution of 2-Chloro-5-nitrobenzaIdehyde (3.7 g, 0.020 mol) in N, N- Dimethylformamide (40 ml_) was added methyl thioglyocolate (1.82 ml_, 0.020 mol) followed by K2CO3 (3.3 g, 0.024 mol). The reaction mixture was stirred at rt overnight. Then, water was added to the reaction mixture and the suspension was filtered. The residue was subsequently washed with water to yield the product 6-Nitro- benzo[b]thiophene-2-carboxylic acid methyl ester as yellow solid. Yield: 95 percent.
94% With potassium carbonate In water; N,N-dimethyl-formamide at 20℃; Potassium carbonate (1.73 g, 12.5 mmol) was added to a solution of 2-chloro-5-nitrobenzaldehyde (1.94 g, 10.5 mmol) and methyl 2-mercapto acetate (1.11 g, 10.5 mmol) in DMF (21 mL), and the mixture was stirred at room temperature overnight.
Water (100 mL) was added thereto, then the reaction solution was stirred at room temperature for 1 hour, and then the obtained precipitate was filtered out and dried to obtain the title compound (2.35 g, 94percent).
1H-NMR (d-DMSO): δ 9.00 (s, 1H), 8.47-8.42 (m, 1H), 8.40-8.28 (m, 2H), 3.92 (s, 3H).
66%
Stage #1: With sodium hydride In N,N-dimethyl-formamide at 20℃; for 0.166667 h;
Stage #2: at 20 - 100℃; for 6 h;
Methyl thioglycolate (19.62 mL, 0.216 mol) was added dropwise, via syringe pump, to a stirred suspension of 95percent sodium hydride (5.99 g, 0.237 mol) in dry N,N-dimethyl- formamide (400 mL) at r.t. under nitrogen (CAUTION : hydrogen evolution). Upon complete addition, the reaction was stirred for 10 min and then a solution of 2-chloro-5- nitrobenzaldehyde (40.0 g, 0.216 mol) in DMF (120 mL) was added. The solution turned orange and a gentle exotherm was observed. After Ih, the now yellow mixture was heated to 100 °C for 5 h. The mixture turned amber in appearance. After cooling to r.t. the mixture was poured into 1 N aqueous hydrochloric acid (500 mL). The resulting yellow precipitate was filtered off and washed with water (250 mL). The solid was suspended in hot methanol / ethyl acetate (1:1) (1000 mL) and allowed to cool to r.t. The EPO <DP n="28"/>resulting solid was filtered off and air dried to yield methyl 5-nitrobenzo[b]thiophene-2- carboxylate (33.77 g, 66percent) as a tan amorphous solid. 1H NMR δ Cd6-DMSO, 400 MHz) 3.92 (s, 3 H), 8.32 (dd, / = 9, 2 Hz, 1 H), 8.37 (d, / = 9 Hz, 1 H), 8.45 (s, 1 H), 9.00 (d, / = 2 Hz, 1 H).
95% With sodium methylate In methanol Preparation of Methyl 5-Nitrobenzo[b]thiophene-2-Carboxylate
A 2000 ml 3-necked round-bottomed flask, 250 ml pressure equalized dropping funnel, Teflon stirrer, and gas inlet were oven-dried for 12 hours at 160° C.
The apparatus was rapidly assembled, fitted with a thermometer, flushed with dry nitrogen gas, and allowed to cool to room temperature.
The cooled flask was charged with methanol (600 ml) and methyl thioglycolate (28.6 g, 0.27 mole).
Sodium methoxide (19,98 g, 0.37 mole) in methanol (125 ml) was added to the reaction mixture over 10 minutes while stirring.
The reaction mixture was then warmed to 40° C. and a solution of 2-chloro-5-nitrobenzaldehyde (28.6 g, 0.27 mole) in methanol (300 ml) was added over a period of about 20 minutes.
The resulting slurry was stirred at 40° C. for 1 hour, cooled to room temperature, and acidified with 2M hydrochloric acid.
The resulting white solid was filtered, washed with water (2*300 ml) and air-dried to give 61 g (95percent) of methyl 5-nitrobenzothiophene-2-carboxylate.
See, R. A. Zambias, M. L. Hammond, Synthetic Communications, 21:959 (1991).

Reference: [1] Synthetic Communications, 1991, vol. 21, # 7, p. 959 - 964
[2] Organic and Biomolecular Chemistry, 2015, vol. 13, # 24, p. 6814 - 6824
[3] Patent: WO2006/101454, 2006, A1, . Location in patent: Page/Page column 45
[4] Patent: EP2876105, 2015, A1, . Location in patent: Paragraph 0945; 0946
[5] Heterocycles, 2008, vol. 75, # 8, p. 1913 - 1929
[6] Journal of the American Chemical Society, 2000, vol. 122, # 27, p. 6382 - 6394
[7] Patent: WO2006/66172, 2006, A1, . Location in patent: Page/Page column 26-27
[8] Journal of Medicinal Chemistry, 1990, vol. 33, # 9, p. 2621 - 2629
[9] Patent: US5863936, 1999, A,
[10] Journal of Medicinal Chemistry, 2006, vol. 49, # 24, p. 7108 - 7118
[11] Bioorganic and Medicinal Chemistry, 2016, vol. 24, # 3, p. 403 - 427
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  • [ 6361-21-3 ]
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YieldReaction ConditionsOperation in experiment
69% With potassium carbonate In N,N-dimethyl-formamide Step 1:
Methyl-5-nitro-benzo[b]thiophene-2-carboxylate (584)
A stirring suspension of 5-nitro-2-chloro-benzaldehyde (4.0 g, 21.6 mmol) in DMF (40 ml) at 5° C. was treated with K2CO3(3.52 g, 25.5 mmol) followed by methylglycolate (1.93 ml, 21.6 mmol).
The resulting solution was warmed to 25° C. and stirred for 20 h.
The solution was then poured into 250 ml of ice H2O and the white precipitate that formed was collected by filtration.
Crystallization from EtOAc afforded fine pale orange needles of 584 (3.54 g, 69percent). LRMS: 237.0 (Calc.); 238.1 (found).
1H NMR: (DMSO) δ (ppm): 9.00 (d, J=2.2 Hz, 1H), 8.45 (s, 1H), 8.39-8.30 (m, 2H), 3.93 (s, 3H).
69% With potassium carbonate In N,N-dimethyl-formamide Step 1:
Methyl-5-nitro-benzo[b]thiophene-2-carboxylate (584)
A stirring suspension of 5-nitro-2-chloro-benzaldehyde (4.0 g, 21.6 mmol) in DMF (40 ml) at 5° C. was treated with K2CO3(3.52 g, 25.5 mmol) followed by methylglycolate (1.93 ml, 21.6 mmol).
The resulting solution was warmed to 25° C. and stirred for 20h.
The solution was then poured into 250 ml of ice H2O and the white precipitate that formed was collected by filtration.
Crystallization from EtOAc afforded fine pale orange needles of 584 (3.54 g, 69percent). LRMS: 237.0 (Calc.); 238.1 (found).
1H NMR: (DMSO) δ (ppm): 9.00 (d, J=2.2 Hz, 1H), 8.45 (s, 1H), 8.39-8.30 (m, 2H), 3.93 (s, 3H).
69% With potassium carbonate In N,N-dimethyl-formamide Step 1:
Methyl-5-nitro-benzo[b]thiophene-2-carboxylate (584)
A stirring suspension of 5-nitro-2-chlorobenzaldehyde (4.0 g, 21.6 mmol) in DMF (40 ml) at 5° C. was treated with K2CO3(3.52 g, 25.5 mmol) followed by methylglycolate (1.93 ml, 21.6 mmol).
The resulting solution was warmed to 25° C. and stirred for 20 h.
The solution was then poured into 250 ml of ice H2O and the white precipitate that formed was collected by filtration.
Crystallization from EtOAc afforded fine pale orange needles of 584 (3.54 g, 69percent). LRMS: 237.0 (Calc.).
238.1 (found).
1H NMR: (DMSO) δ (ppm): 9.00 (d, J=2.2 Hz, 1H), 8.45 (s, 1H), 8.39-8.30 (m, 2H), 3.93 (s, 3H).
Reference: [1] Patent: US2004/142953, 2004, A1,
[2] Patent: US2005/288282, 2005, A1,
[3] Patent: US6897220, 2005, B2,
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YieldReaction ConditionsOperation in experiment
5.8 g With potassium carbonate In N,N-dimethyl-formamide at 60℃; for 2 h; A mixture of 5.00 g of 2-fluoro-5-nitrobenzaldehyde, 3.76 g of methyl thioglycolate, 4.18 g of potassium carbonate,and 30 ml of N,N-dimethylformamide was stirred for 2 hours at 60°C. The reaction mixture was cooled to roomtemperature. Water was added to the reaction mixture, and extraction was performed three times by using ethyl acetate.The collected organic layer was washed with water and saturated saline, dried over magnesium sulfate, and thenconcentrated under reduced pressure. The residues were recrystallized from methanol, thereby obtaining 5.8 g of methyl5-nitrobenzo[b]thiophene-2-carboxylate
Reference: [1] ACS Medicinal Chemistry Letters, 2014, vol. 5, # 9, p. 963 - 967
[2] ACS Medicinal Chemistry Letters, 2015, vol. 6, # 9, p. 1010 - 1014
[3] Patent: EP2926660, 2015, A1, . Location in patent: Paragraph 0271
[4] Bioorganic and Medicinal Chemistry Letters, 2016, vol. 26, # 19, p. 4684 - 4686
  • 7
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YieldReaction ConditionsOperation in experiment
100% With hydrogenchloride; tin(ll) chloride In water at 80℃; for 1 h; To the above product 6-Nitro-benzo[b]thiophene-2-carboxylic acid methyl ester (1 g, 0.004 mol) and SnCI2-H2O (4.85 g, 0.017 mol) was added concentrated HCI (20 ml_, 0.24 mol). The reaction was stirred at 80 0C for 1 hour, then cooled to low temperature. Then, the pH of the reaction mixture was raised to pH = 9 ~ 11 using 10percent NaOH solution in water. The suspension was then filtered and residue was washed with H2O followed by CH3OH to yield the product as yellow solid quantitatively.
83% With hydrogen In methanol for 2 h; Synthesis of Benzofuran and Benzo [b] thiophene Derivatives; Synthesis of 5- (3-chloro-2-methvl-benzenesulfonylamino) -benzorblthiophene-2-carboxylic acid methyl ester, STX 971 (KRB01096) :; 5-amino-benzo [b] thiophene-2-carboxylic acid methyl ester (KRB01094) :; To a solution of 5-nitro-benzo [b] thiophene-2-carboxylic acid methyl ester [15] (130 mg, 0.548 mmol) in methanol (30 mL) was added 5percent palladium on carbon (20 mg) and the mixture was stirred under 1 atm Ha for 2 h. The mixture was filtered through celite and the filtrate evaporated. The residue was passed through a silica column to afford 5-amino- benzo [b] thiophene-2-carboxylic acid methyl ester as a pale yellow solid (94 mg, 83percent), single spot at Rf 0.75 (95: 5 dichloromethane : methanol).'H NMR (CDCl3) : No. 7.86 (1H, s), 7.61 (1H, d, J=8. 7 Hz), 7.11 (1H, d, J=2. 2 Hz), 6.88 (1H, dd, J=8.7, 2. 5 Hz), 3.91 (3H, s), 3.76 (2H, s, N-H2) [16].
Reference: [1] Patent: WO2006/101454, 2006, A1, . Location in patent: Page/Page column 45
[2] Bioorganic and Medicinal Chemistry, 2002, vol. 10, # 5, p. 1611 - 1618
[3] Journal of the American Chemical Society, 2000, vol. 122, # 27, p. 6382 - 6394
[4] ACS Medicinal Chemistry Letters, 2014, vol. 5, # 9, p. 963 - 967
[5] Patent: WO2005/42513, 2005, A1, . Location in patent: Page/Page column 57-58
[6] Patent: US2004/142953, 2004, A1,
[7] Patent: US2005/288282, 2005, A1,
[8] Patent: US6897220, 2005, B2,
[9] Patent: EP2926660, 2015, A1, . Location in patent: Paragraph 0384
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Reference: [1] Patent: US5863936, 1999, A,
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