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CAS No. : | 158669-26-2 | MDL No. : | MFCD05662396 |
Formula : | C7H6INO2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | GNBKAOHTTIVAMT-UHFFFAOYSA-N |
M.W : | 263.03 | Pubchem ID : | 10038381 |
Synonyms : |
|
Num. heavy atoms : | 11 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.14 |
Num. rotatable bonds : | 2 |
Num. H-bond acceptors : | 3.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 48.83 |
TPSA : | 39.19 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.0 cm/s |
Log Po/w (iLOGP) : | 1.65 |
Log Po/w (XLOGP3) : | 1.27 |
Log Po/w (WLOGP) : | 1.51 |
Log Po/w (MLOGP) : | 0.84 |
Log Po/w (SILICOS-IT) : | 2.44 |
Consensus Log Po/w : | 1.54 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -2.54 |
Solubility : | 0.754 mg/ml ; 0.00287 mol/l |
Class : | Soluble |
Log S (Ali) : | -1.69 |
Solubility : | 5.34 mg/ml ; 0.0203 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -3.05 |
Solubility : | 0.232 mg/ml ; 0.000883 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 2.0 alert |
Leadlikeness : | 0.0 |
Synthetic accessibility : | 1.84 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | Stage #1: With n-butyllithium; diisopropylamine In tetrahydrofuran; n-heptane at -75 - -20℃; for 2 h; Stage #2: at -75℃; for 0.166667 h; Stage #3: at -75 - 20℃; |
A mixture of DIPA (3.5 mL, 25 mmol) in THF (100 mL) was cooled to -20 °C and nBuLi (2.7 M in heptane, 9.2 mL, 25 mmol) was added dropwise. After stirring 10 mm, the r.m. was cooled to -75 °C and 2-fluoro-3-iodopyridine (5.55 g, 25 mmol) in THF (50 mL) was added dropwise. Stirring was continued for 2 h at -65 °C. The r.m. was cooled to -75 °C and ethyl formate (2.3 mL, 28 mmol) in THF (25 mL) was added dropwise. After 10 mill sodium methoxide (5.8 mL, 0.95 g/mL, 25 mmol, 25percent purity) was added dropwise. The cooling bath was removed and the r.m. was allowed to come to r.t. and treated with brine (50 mL), Et20 (100 mL) and the layers were separated. The aq. layer was extracted with Et20 (100 mL) and the combined organic layers weretreated with brine (50 mL), dried over MgSO4, filtered and concentrated in vacuo to afford intermediate 1 (6.15 g, 94percent), which was used as such in the next reaction step. |
64% | Stage #1: With n-butyllithium; diisopropylamine In tetrahydrofuran at -78 - -8℃; for 2.5 h; Stage #2: at -78 - 20℃; Stage #3: With water In tetrahydrofuran; methanol at 0℃; |
To a solution of diisopropylamine (345 mL, 249 g, 2.46 mol) in anhydrous THF (5 L) at -8 to -10° C. under a blanket of N2 was added n-BuLi (880 mL, 158 g, 2.46 mol) dropwise via cannula. The mixture was stirred at -10° C. for 30 min, cooled to -78° C. and treated with a solution of 2-fluoro-3-iodopyridine (500 g, 2.24 mol) in dry THF (2 L) dropwise. After the addition, the reaction mixture was warmed to -60° C. and this temperature was maintained for 2 h. The mixture was then cooled to -78° C., treated with ethyl formate (183 g, 2.47 mol) dropwise, followed by sodium methoxide (149 g, 2.75 mol) in MeOH (1.5 L) and warmed to ambient temperature. The reaction mixture was quenched with ice water and extracted with EtOAc. The layers were separated and the organic phase was washed with water and brine, dried (Na2SO4) and concentrated in vacuo. The residue was purified by flash chromatography on silica gel to afford 4-iodo-2-methoxynicotinaldehyde (380 g, 64percent) as a solid. |
44 g | Stage #1: With n-butyllithium; diisopropylamine In tetrahydrofuran; hexane at -66 - -10℃; for 2 h; Inert atmosphere Stage #2: at -66℃; Inert atmosphere |
Under the stream of nitrogen, a THF (500 mL) solution of diisopropylamine (25 g) was added into a 2L-fourneckedflask. The solution was cooled to -25°C, and n-butyl lithium - hexane solution (1.57 mol/L) (157 mL) was droppedto the solution for 20 minutes (-25°C → -15°C), and the solution was stirred at -10°C for 30 minutes. The resulting solutionwas cooled to -66°C, and a THF (200 mL) solution of 2-fluoro-3-iodopyridine (CAS registration No.: 113975-22-7) (50g) was dropped thereto for 25 minutes, and stirred at -60°C for two hours. The resulting solution was cooled to -66°C,and ethyl formate (18.3 g) was dropped thereto for 10 minutes. Then, 28percent solution of sodium methoxide methanolsolution (53.2 g) in methanol (100 mL) was dropped, and lifted up from dry ice bath. The resulting product was naturallycooled to room temperature, and ice water (100 mL) was dropped thereto. A saturated saline solution (1 L) was addedthereto. The resulting solution was extracted with ethyl acetate (1 L), and washed with water (700 mL) and a saturatedsaline solution (700 mL). The water layer was combined and extracted with ethyl acetate (500 mL 3 2), and washedwith water (500 mL) and a saturated saline solution (500 mL). The organic layer was combined and dried over anhydroussodium sulfate, and the solvent was removed by evaporation under reduced pressure. The obtained residue was purifiedby column chromatography on silica gel (hexane : ethyl acetate = 9:1 → 6:1 → 5:1 → 4:1 → 3:1) to obtain the titlecompound (44 g) having the following physical property values |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
29% | Stage #1: With 2,4,6-trimethylphenyl bromide; tert.-butyl lithium In tetrahydrofuran at -78 - 0℃; for 3 h; Stage #2: at -78℃; for 0.5 h; |
Synthesis of Difluoro Compound General Scheme; [00632] 4-Iodo-2-methoxynicotinic aldehyde: To a solution of t-BuLi (1.7 M, 7.36 niL, 12.51 mmol) in 20 niL THF at -78 °C was added dropwise 2-bromomesitylene (0.91 niL, 5.95 mmol). After stirred for 1 h, 2-methoxypyridine (0.48 mL, 4.58 mmol) was added dropwise, and the mixture was warmed to 0 °C and stirred for 2 h. The solution was cooled to -78 °C and JV-formyl-iV, iV,7V-trimethylethylenediamine (0.7 mL, 5.06 mmol) was added. The mixture was stirred at -78 °C for 30 min and then warmed to -23 °C. A hexane solution of W-BuLi (2.5 M, 2.75 mL, 6.87 mmol) was added dropwise, and the resulting yellow mixture was stirred for 3 h. The mixture was cooled to -78 °C and transferred via a double- tipped needle to a solution of iodine (2.17 g, 8.23 mmol) in 30 mL of THF at -78 °C. After stirred at -78 °C for 30 min, the cooling bath was removed and the reaction mixture was allowed to warm to the room temperature. After the reaction mixture was cooled to -5 °C, aqueous solution OfNH4Cl (20 mL) was added dropwise and stirred for 15 min. The reaction mixture was poured into brine (300 mL) and extracted with EtOAc (5 xlOO mL). The combined extracts were washed with brine (2 x 50 mL), dried over Na2SO4 and concentrated. The residue was purified by chromatography (25:1 hexanes/EtOAc) to afford the title <n="345"/>compound (350 mg, 29percent). 1H NMR (CDCl3) δ 4.05 (s, 3H, CH3), 7.53 (d, J= 6 Hz, IH, ArH), 7.85 (d, J= 6 Hz, IH, ArH), 10.20 (s, IH, CHO). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | Stage #1: With n-butyllithium; diisopropylamine In tetrahydrofuran; n-heptane at -75 - -65℃; for 2 h; Stage #2: at -75 - 20℃; |
A mixture of DIP A (3.5 mL, 25 mmol) in THF (100 mL) was cooled to -20 °C and n- BuLi (2.7 M in heptane, 9.2 mL, 25 mmol) was added dropwise. After stirring 10 min, the r.m. was cooled to -75 °C and 2-fluoro-3-iodopyridine (5.55 g, 25 mmol) in THF (50 mL) was added dropwise. Stirring was continued for 2 h at -65 °C. The r.m. was cooled to -75 °C and ethyl formate (2.3 mL, 28 mmol) in THF (25 mL) was added dropwise. After 10 min sodium methoxide (5.8 mL, 0.95 g/mL, 25 mmol, 25percent purity) was added dropwise. The cooling bath was removed and the r.m. was allowed to come to r.t. and treated with brine (50 mL), Et20 (100 mL) and the layers were separated. The aq. layer was extracted with Et20 (100 mL) and the combined organic layers were treated with brine (50 mL), dried over MgSC^, filtered and concentrated in vacuo to afford intermediate 1 (6.15 g, 94percent), which was used as such in the next reaction step. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | Stage #1: With tert.-butyl lithium In tetrahydrofuran; pentane at -75 - -60℃; for 1 h; Stage #2: at -75 - -60℃; for 0.5 h; |
Synthesis of 4-iodo-2-methoxypyridine-3-carbaldehyde (DeTMS-PM) t-Butyllithium (1.5 M in n-pentane, 6.9 mL, 9.16 * 1.1 mmol) was added dropwise to a dry THF (7.5 mL) solution of 2-methoxypyridine (1.00 g, 9.16 mmol) between -75°C and -60°C and stirred at the same temperature for 1 hour. A dry THF (10 mL) solution of FEO (1.44 g, 9.16 * 1.2 mmol) was added dropwise at the same temperature and stirred for 30 minutes. The temperature was raised to around -23°C, ethylene glycol dimethyl ether (DME, organic synthesis grade, 7.5 mL) was added, and subsequently n-butyllithium (1.6 M in n-hexane, 9.9 mL, 9.16 * 1.7 mmol) was added dropwise at between -15°C and -25°C and stirred at around -23°C for 2 hours. The mixture was cooled to around -70°C, a DME (10 mL) solution of iodine (4.42 g, 9.16 * 1.9 mmol) was added at one-portion, and stirred at around -70°C for 30 minutes. The temperature was raised to room temperature, 10percent Na2SO3 (appropriate amount, until the iodine color disappeared) was added and it was stirred for 10 minutes, followed by adding water, brine, and ethyl acetate (50 mL). The organic layer was separated, dried over Na2SO4, filtered, and then concentrated to dryness. The residue (brown solid) was dissolved in chloroform and purified by medium pressure silica gel column chromatography (n-hexane:ethyl acetate = 1000:1 --> 100:1). Desired fractions were concentrated to dryness, and DeTMS-PM (1.31 g, 4.98 mmol, 54percent) was obtained as a yellow solid. 1H-NMR (400 MHz, CDCl3) δ: 4.05 (3H, s, MeO), 7.54 (1H, d, J = 5.4 Hz, aromatic-H), 7.85 (1H, d, J = 5.4 Hz, aromatic-H), 10.21 (1H, s, CHO). IR (KBr) (cm-1): 2943, 1697 (CHO), 1543, 1458, 1362, 1015. EI-MS (m/z): 263 [M]+ (100percent) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
19% | Stage #1: With tert.-butyl lithium In tetrahydrofuran at -78 - -60℃; for 1 h; Stage #2: at -78 - -20℃; for 1.25 h; |
A solution of 2-methoxypyridine (2.18 g, 20 mmol) in 100 ml THF is cooled to -78 0C and t-BuLi (13 ml of 1.7 M solution) is added which results in a color shift of the solution from clear to yellow/orange. Stirring at same temperature is continued for 30 min and at -60 0C for another 30 min. After cooling down to -78 0C, N- (2-Dimethylaminoethyl)-N-methylformimidine (3.08 ml, 22 mmol) is added within a few minutes. Stirring is continued for another 30 min at -78 0C and 45 min at -20 0C. The reaction mixture is now cooled to -40 0C, n-BuLi (15.6 ml of a 1.6 M solution) is added and stirring at that temperature is continued for 90-120 min. After cooling the reaction mixture to -78 0C, a pre-cooled solution of iodine (10.1 g, 40 mmol) in 100 ml THF is added via syringe until de-colorization stops to occur. Stirring at -78 0C is continued for another 30 min, and the reaction mixture is allowed to warm up to 00C before the mixture is quenched with 150 ml of saturatedNa2S2O3-solution and 100 ml of water. The formed precipitate is dissolving and the solution is loosing its color slowly during stirring overnight at RT. Purification is accomplished by phase separation and extraction of the aqueous phase with diethylether. The combined organic phases are washed with IN aqueous HCl, saturated aqueous sodium bicarbonate and brine. After drying and evaporation of solvent, 3.5 g of raw product is furnished. The product is purified by flash chromatography using a heptan/ethyl acetate (9:1) eluent yielding 1.0 g (19percent) of the desired product. Thoroughly dried glass ware is needed as well as inert gas atmosphere has to be applied for all reactions. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
23% | Stage #1: With tert.-butyl lithium In tetrahydrofuran at -78℃; for 0.5 h; Stage #2: With n-butyllithium In tetrahydrofuran at -78 - -20℃; for 2.75 h; Stage #3: With iodine In tetrahydrofuran at -78 - 0℃; for 0.5 h; |
Example A5: A -78°C solution of 2-methoxypyridine (40 g, 0.37 mol) in THF (1 L) was treated with t-BuLi (163 mL, 0.41 mol), stirred at -78°C for 0.5 h, treated with N-(2-dimethylaminoethyl)-N-methylformamidine (52.9 g, 0.41 mol) over 10 mm, stirred at -78°C for another 0.5 h, then warmed to -20°C for 45 minutes. The mixture was cooled to -40°C, treated with n-BuLi (289 mL, 0.46 mol), stirred at -40°C for 1.5 h, then cooled to -78°C. The cold mixture was added via syringe to a solution of 12 (187.8 g, 0.74 mol) in THF at -78°C, stirred at -78°C for 0.5 h, then warmed to 0°C. The mixture was quenched with satd. NaS2O3, the organic layer washed with brine, dried over Na2SO4, concentrated under reduce pressure, and purified by chromatography. The resulting solid was washed with pet ether to afford 4-iodo-2-methoxynicotinaldehyde (22 g, 23percent). ‘H NMR (400 MHz, CDC13): 5 10.20 (s, 1 H), 7.84 (d, J = 5.6 Hz, 1 H), 7.53 (d, J = 5.2 Hz, 1 H), 3.99 (s, 3 H). |
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