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Chemical Structure| 1146699-66-2
Chemical Structure| 1146699-66-2
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Product Details of [ 1146699-66-2 ]

CAS No. :1146699-66-2 MDL No. :MFCD13195458
Formula : C20H17ClF4N4O4S Boiling Point : -
Linear Structure Formula :- InChI Key :XEAOPVUAMONVLA-QGZVFWFLSA-N
M.W : 520.89 Pubchem ID :46883536
Synonyms :
BMS-708163
Chemical Name :(R)-2-((4-Chloro-N-(2-fluoro-4-(1,2,4-oxadiazol-3-yl)benzyl)phenyl)sulfonamido)-5,5,5-trifluoropentanamide

Calculated chemistry of [ 1146699-66-2 ]

Physicochemical Properties

Num. heavy atoms : 34
Num. arom. heavy atoms : 17
Fraction Csp3 : 0.25
Num. rotatable bonds : 10
Num. H-bond acceptors : 11.0
Num. H-bond donors : 1.0
Molar Refractivity : 112.31
TPSA : 127.77 Ų

Pharmacokinetics

GI absorption : Low
BBB permeant : No
P-gp substrate : No
CYP1A2 inhibitor : Yes
CYP2C19 inhibitor : Yes
CYP2C9 inhibitor : Yes
CYP2D6 inhibitor : No
CYP3A4 inhibitor : Yes
Log Kp (skin permeation) : -6.65 cm/s

Lipophilicity

Log Po/w (iLOGP) : 2.45
Log Po/w (XLOGP3) : 3.98
Log Po/w (WLOGP) : 6.53
Log Po/w (MLOGP) : 2.66
Log Po/w (SILICOS-IT) : 3.44
Consensus Log Po/w : 3.81

Druglikeness

Lipinski : 1.0
Ghose : None
Veber : 0.0
Egan : 1.0
Muegge : 1.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -5.29
Solubility : 0.00269 mg/ml ; 0.00000517 mol/l
Class : Moderately soluble
Log S (Ali) : -6.36
Solubility : 0.000225 mg/ml ; 0.000000432 mol/l
Class : Poorly soluble
Log S (SILICOS-IT) : -7.59
Solubility : 0.0000133 mg/ml ; 0.0000000255 mol/l
Class : Poorly soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 0.0 alert
Leadlikeness : 3.0
Synthetic accessibility : 3.86

Safety of [ 1146699-66-2 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P305+P351+P338 UN#:N/A
Hazard Statements:H315-H319-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 1146699-66-2 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 1146699-66-2 ]
  • Downstream synthetic route of [ 1146699-66-2 ]

[ 1146699-66-2 ] Synthesis Path-Upstream   1~4

  • 1
  • [ 1146699-70-8 ]
  • [ 122-51-0 ]
  • [ 1146699-66-2 ]
YieldReaction ConditionsOperation in experiment
90% With trifluoroacetic acid In acetonitrile at 40 - 50℃; Step C.
(2R)-2-[[(4-Chlorophenyl)sulfonyl][[2-fluoro-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]amino]-5,5,5-trifluoropentanamide
(R)-2-(4-Chloro-N-(2-fluoro-4-(N'-hydroxycarbamimidoyl)benzyl)-phenylsulfonamido)-5,5,5-trifluoropentanamide (246 g) was charged to a reactor followed by dry acetonitrile (509 mL), triethyl orthoformate (120 mL), and trifluoroacetic acid (7 mL).
The solution was heated to 40-50° C. until the reaction was complete by HPLC (<0.15 relative AP starting material).
Methanol (1.48 L) was charged in one portion, followed by water (1.034 L), keeping the batch at 45-50° C.
The batch was then cooled to 15-20° C. and filtered.
The cake was washed with 2:6:5 MeCN:MeOH:water and tray dried under vacuum at 50-60° C., giving the title compound as a white solid (228 g, 90percent yield).
1H NMR, (CDCl3, 300 MHz) δ: 1.40-1.58 (m, 1H) 1.75-1.90 (m, 1H) 1.92-2.07 (m, 1H) 2.10 -2.26 (m, 1H) 4.37 (dd, J=8.67, 6.22 Hz, 1H) 4.48 (d, J=15.64 Hz, 1H) 4.64 (d, J=15.82 Hz, 1H) 5.54 (s, 1H) 6.33 (s, 1H) 7.44-7.54 (m, 2H) 7.62 (t, J=7.72 Hz, 1H) 7.68-7.76 (m, 3H) 7.85 (dd, J=7.91, 1.51 Hz, 1H) 8.76 (s, 1H).
13C NMR, (DMSO-d6, 75 MHz) δ: 170.34, 167.75, 165.80, 159.64 (d, J=244.5 Hz, 1C), 138.19, 137.64, 131.25 (d, J=3.75 Hz, 1C), 129.31, 129.23, 129.05 (d, J=14.25 Hz, 1C), 126.74 (q, J=274.5 Hz, 1C), 126.91, 126.80, 123.12 (d, J=3.75 Hz, 1C), 113.7 (d, J=24.0 Hz, 1C), 57.92, 41.38 (d, J=4.5 Hz, 1C), 30.04 (d, J=30.0 Hz, 1C), 22.90. 19F NMR, (CDCl3, 282 MHz) δ: -116.3, -66.5. IR (KBr): 3454, 334, 3286, 2952, 1705, 1432, 1325, 1260, 1167, 1084, 828 cm-1.
Anal. Calcd. for C20H17ClF4N4O4S Calc. C, 46.11; H, 3.29; N, 10.71; S, 6.15; F, 14.58; Cl, 6.80.
Found C, 46.06; H, 3.24; N, 10.71; S, 6.25; F, 14.60; Cl, 6.88.
69.3% With boron trifluoride diethyl etherate In 1,1-dichloroethane at 70℃; for 1 h; Step C. (2R)-2-[[(4-Chlorophenyl)sulfonyl][[2-fluoro-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]amino]-5,5,5-trifluoropentanamide; To a solution of (R)-2-(4-chloro-N-(4-cyano-2-fluorobenzyl)phenylsulfonamido)-5,5,5-trifluoropentanamide (6.5 g, 13.6 mmol) in EtOH (70 mL) was added NH2OH (50percent in H2O, 2.6 mL 40.8 mmol). The resulting mixture was stirred at 80° C. under nitrogen for 1 h and then cooled to rt. The solvents were evaporated under reduced pressure. The residue was dissolved in EtOAc and washed with water and dried over Na2SO4. Evaporation of the solvent gave a white solid which was recrystallized from EtOAc and hexanes to afford the intermediate amide oxime as a white solid (6.93 g, quantitative yield). To a mixture of the intermediate (R)-2-(4-chloro-N-(2-fluoro-4-(N'-hydroxycarbamimidoyl)benzyl)phenylsulfonamido)-5,5,5-trifluoropentanamide (6.93 g, 13.6 mmol) and triethyl orthoformate (6.77 mL, 40.8 mmol) in dichloroethane (30 mL) was added BF3.OEt2 (0.17 mL, 1.36 mmol). The resulting mixture was stirred at 70° C. for 1 h and then cooled to room temperature. Chromatography (silica gel, biotage, 40+M column, 3percent to 80percent EtOAc in hexanes, 651 mL) provided the title compound as a white solid. (4.9 g, 69.3percent yield). The above 4.9 g of product was combined with a second lot of 9.8 g of (2R)-2-[[(4-chlorophenyl)sulfonyl][[2-fluoro-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]amino]-5,5,5-trifluoropentanamide (prepared by the procedure described in Example 1). To the combined lots (14.7 g) was added isopropyl alcohol (75 mL). The mixture was refluxed until almost complete dissolution, and then filtered. The filtrate was stirred at rt for 16 h. and filtered. A white fine crystalline white solid was obtained after drying to a constant mass to afford (2R)-2-[[(4-chlorophenyl)sulfonyl][[2-fluoro-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]amino]-5,5,5-trifluoropentanamide (13.7 g). 1H NMR (CDCl3, 500 MHz) δ 8.77 (s, 1H), 7.90 (dd, J=8.0, 1.5 Hz, 1H), 7.77-7.71 (m, 3H), 7.64 (dd, J=7.5, 7.5 Hz, 1H), 7.51 (d, J=8.5 Hz, 2H), 6.34 (s, 1H), 5.28 (s, 1H), 4.66 (d, J=15.6 Hz, 1H), 4.51 (d, J=15.6 Hz, 1H), 4.39 (dd, J=8.9, 6.3 Hz, 1H), 2.25-1.82 (m, 3H), 1.54-1.47 (m, 1H); ESI MS m/z 521 [C20H17ClF4N4O4S+H]+.
Reference: [1] Patent: US2009/111858, 2009, A1, . Location in patent: Page/Page column 23
[2] Patent: US2009/111858, 2009, A1, . Location in patent: Page/Page column 19-20
[3] ACS Medicinal Chemistry Letters, 2010, vol. 1, # 3, p. 120 - 124
  • 2
  • [ 1146699-64-0 ]
  • [ 1146699-67-3 ]
  • [ 1146699-66-2 ]
YieldReaction ConditionsOperation in experiment
50% With hydroxylamine; tetra-(n-butyl)ammonium iodide; caesium carbonate In acetonitrile at 15 - 35℃; Step B, Procedure 2
To a suitable vessel was added (R)-2-(4-chlorophenylsulfonamido)-5,5,5-trifluoropentanamide (2.68 kg, 7.77 mol, 1 eq), 3-(4-(bromomethyl)-3-fluorophenyl)-1,2,4-oxadiazole (2.00 kg, 7.78 mol, 1 eq), cesium carbonate (1.65 kg, 5.06 mol, 0.65 eq), tetrabutylammonium iodide (0.29 kg, 0.78 mol, 0.1 eq) and acetonitrile (12.0 L 4.5 L/kg).
The reaction was heated to 35° C. until complete by HPLC (3-(4-(bromomethyl)-3-fluorophenyl)-1,2,4-oxadiazole <0.5 relative AP by HPLC).
The reaction was cooled to 15° C. and water (10.72 L, 4 L/kg) was added with stirring followed by glacial acetic acid (0.22 kg) to bring the pH of the reaction to <6.5.
The stirring was stopped and the phases were separated (the top layer contained the product).
To the product rich layer was added toluene (26.8 kg, 31 L, 10 kg/kg) followed by brine solution (20percent w/w, 6.39 kg, 2 L/kg) and the layers were separated (the top layer contained the product).
The mixture was distilled at ~50° C. under vacuum (200 mbar) until acetonitrile was removed.
The concentration was adjusted with additional toluene if needed after distillation to ensure total volume in the reactor was ~10 L/kg.
Isopropyl alcohol (0.48 kg, 0.2 L/kg) was charged and the batch was cooled to 15° C. to initiate crystallization.
The resulting slurry was filtered and washed with cold toluene (18.65 kg, 21.56 L, 8 L/kg).
The crude cake was tray dried under vacuum at 50° C. until loss on drying was <1.0percent.
The dry cake was added to a 100 L reactor along with isopropyl alcohol (27.34 kg, 34.8 L, 13 L/kg) and hydroxylamine (50percent aqueous solution, 0.05 kg, 1.51 mol, 0.2 eq).
The mixture was heated to 65° C. and monitored by HPLC until (R)-2-(4-chloro-N-(4-cyano-2-fluorobenzyl)phenylsulfonamido)-5,5,5-trifluoropentanamide was <0.4 AP.
The reaction was then distilled (pot temperature ~50° C., vacuum 300 mbar) until reaction volume was ~60percent of original.
Acetonitrile (5.36 kg, 2 L/kg) was charged and the reaction temperature was increased to 70° C. to achieve complete dissolution.
Water (11.26 L, 4.2 L/kg) was charged slowly while keeping the reaction temperature >65° C.
The reaction was cooled to 15° C. over 2 hours and crystallization occurred.
The slurry was filtered and washed with cold aqueous isopropyl alcohol (2:1 IPA:water by volume).
The cake was dried in a vacuum oven until loss on drying was <1percent.
The product was then recrystallized by dissolving in acetonitrile (2 L/kg based on weight of input of dried cake) and methanol (6 L/kg) and then heated to 50° C. Water (4 L/kg) was added slowly, keeping the reaction temperature >50° C.
The reaction was cooled to 15° C. over 2 hours.
The resulting slurry was filtered and washed with a solution of methanol:acetonitrile:water (6:2:4, 5 L/kg) to give (2R)-2-[[(4-chlorophenyl)sulfonyl][[2-fluoro-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]amino]-5,5,5-trifluoropentanamide (2.02 kg, 50percent yield) as a white solid.
Reference: [1] Patent: US2009/111858, 2009, A1, . Location in patent: Page/Page column 21-22
[2] Patent: US2009/111858, 2009, A1, . Location in patent: Page/Page column 20-21
  • 3
  • [ 1186196-25-7 ]
  • [ 1146699-67-3 ]
  • [ 1146699-66-2 ]
YieldReaction ConditionsOperation in experiment
45% With caesium carbonate In N,N-dimethyl-formamide at 20℃; for 2 h; Step D.
(R)-2-(4-chloro-N-(2-fluoro-4-(1,2,4-oxadiazol-3-yl)benzyl)phenylsulfonamido)-5,5,5-trifluoropentanamide
To a solution of sulfonamide (R)-2-(4-chlorophenylsulfonamido)-5,5,5-trifluoropentanamide (130 mg, 0.37 mmol) in DMF (2 mL) was added Cs2CO3 (241 mg, 0.74 mmol) and 3-(4-bromomethyl-3-fluoro-benzyl)-1,2,4-oxadiazole (257 mg, 0.48 mmol).
The reaction was stirred at room temperature for 2 h, diluted with water (50 mL), and extracted with EtOAc (2*50 mL).
The combined organic extract was washed with water (2*50 mL) and brine (50 mL) and concentrated under vacuum.
The residue was purified by column chromatography (silica gel, 0-55percent EtOAc/hexanes) to provide the title oxadiazole compound (92 mg, 45percent) as a white solid: mp 66-68° C.; 1H NMR (500 MHz, CDCl3) δ 8.77 (s, 1H), 7.90 (dd, J=8.0, 1.5 Hz, 1H), 7.77-7.71 (m, 3H), 7.64 (dd, J=7.5, 7.5 Hz, 1H), 7.51 (d, J=8.5 Hz, 2H), 6.34 (s, 1H), 5.28 (s, 1H), 4.66 (d, J=15.6 Hz, 1H), 4.51 (d, J=15.6 Hz, 1H), 4.39 (dd, J=8.9, 6.3 Hz, 1H), 2.25-1.82 (m, 3H), 1.54-1.47 (m, 1H); ESI MS m/z 521 [C20H17ClF4N4O4S+H]+; HPLC 98.9percent (AUC), tR=19.4 min.
Reference: [1] Patent: US2009/111858, 2009, A1, . Location in patent: Page/Page column 4; 19
  • 4
  • [ 1146699-70-8 ]
  • [ 1146699-66-2 ]
Reference: [1] Patent: US2009/111858, 2009, A1, . Location in patent: Page/Page column 20-21
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